- Isis-fish-data-commits - mailman.cloud.codelutin.com

r167 - trunk/rules
by chatellier＠users.labs.libre-entreprise.org Aug. 25, 2009

Aug. 25, 2009

Author: chatellier Date: 2009-08-25 12:15:04 +0000 (Tue, 25 Aug 2009) New Revision: 167 Added: trunk/rules/EffortReduction.java Log: Ajout de l'export EffortReduction Added: trunk/rules/EffortReduction.java =================================================================== --- trunk/rules/EffortReduction.java (rev 0) +++ trunk/rules/EffortReduction.java 2009-08-25 12:15:04 UTC (rev 167) @@ -0,0 +1,139 @@ +package rules; + +import static org.codelutin.i18n.I18n._; + +import java.util.List; + +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; + +import scripts.SiMatrix; +import fr.ifremer.isisfish.entities.Metier; +import fr.ifremer.isisfish.entities.Strategy; +import fr.ifremer.isisfish.rule.AbstractRule; +import fr.ifremer.isisfish.simulator.SimulationContext; +import fr.ifremer.isisfish.types.Date; +import fr.ifremer.isisfish.util.Doc; + +/** + * EffortReduction.java + * + * Created: 3 septembre 2008 + * + * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @version $Revision$ + */ +public class EffortReduction extends AbstractRule { + + /** to use log facility, just put in your code: log.info("..."); */ + static private Log log = LogFactory.getLog(EffortReduction.class); + + @Doc("Begin date") + public Date param_beginDate = new Date(0); + @Doc("End date") + public Date param_endDate = new Date(59); + + @Doc("Pourcentage de reduction d effort applique.") + public double param_PercentReduction = 0.5; + + boolean first = true; + + protected String[] necessaryResult = {}; + + /** + * @return the necessaryResult + */ + public String[] getNecessaryResult() { + return this.necessaryResult; + } + + /** + * Permet d'afficher a l'utilisateur une aide sur la regle. + * @return L'aide ou la description de la regle + */ + public String getDescription() { + return _("Reduce monthly effort of each strategy of the percent indicated"); + } + + /** + * Appele au demarrage de la simulation, cette methode permet d'initialiser + * des valeurs. + * @param context La simulation pour lequel on utilise cette regle + */ + public void init(SimulationContext context) throws Exception { + } + + /** + * La condition qui doit etre vrai pour faire les actions + * @param context La simulation pour lequel on utilise cette regle + * @return vrai si on souhaite que les actions soit faites + */ + public boolean condition(SimulationContext context, Date date, Metier metier) + throws Exception { + + boolean result = true; + if (date.before(param_beginDate)) { + result = false; + } else if (date.after(param_endDate)) { + result = false; + } + if (result) + System.out.println("condition vraie"); + return result; + } + + /** + * Si la condition est vrai alors cette action est executee avant le pas + * de temps de la simulation. + * @param context La simulation pour lequel on utilise cette regle + */ + public void preAction(SimulationContext context, Date date, Metier metier) + throws Exception { + // shinte la boucle metier + if (first) { + first = false; + SiMatrix siMatrix = SiMatrix.getSiMatrix(context); + List<Strategy> strs = siMatrix.getStrategies(date); + for (Strategy str : strs) { + System.out.println("strategy evaluee : " + str.getName()); + + /* Dans un premiere temps tant que l inactivit� est un entier on utilise + * la proportion du nombre de bateaux de la strategie pour reduire l effort + * ce qu on ferait aussi pour une mesure de reduction du nombre de bateaux mais + * comme actuellement on ne tient pas compte de l economie... ca revient au meme + * En fait passer par l inactivit� n est pas la meilleure facon de modifier + * l effort le mieux serait d agir sur un autre coeff qui est multipli� a + * l effort (Fstd ou ciblage) car comme ca le code serait generique mais on + * ne verrait pas que l effort nominal est modifi�... + */ + + double propOld = str.getProportionSetOfVessels(); + double newProp = propOld * (1 - param_PercentReduction); + str.setProportionSetOfVessels(newProp); + + /* int Inact = str.getStrategyMonthInfo(date.getMonth()).getMinInactivityDays(); + System.out.println("inactivity old = "+ Inact); + int nbDays = date.getMonth().getNumbersOfDays(); + System.out.println("nbDays = "+nbDays); + double newInact = nbDays-((nbDays-Inact)*(1-param_PercentReduction)); + System.out.println("newInact = "+newInact); + int ni = (int) newInact ; + System.out.println("ni = "+ ni); + str.getStrategyMonthInfo(date.getMonth()).setMinInactivityDays(ni); + System.out.println("setMinInactivityDays : " + str.getStrategyMonthInfo(date.getMonth()).getMinInactivityDays()); + */ + } + } + } + + /** + * Si la condition est vrai alors cette action est executee apres le pas + * de temps de la simulation. + * @param context La simulation pour lequel on utilise cette regle + */ + public void postAction(SimulationContext context, Date date, Metier metier) + throws Exception { + first = true; + } + +} Property changes on: trunk/rules/EffortReduction.java ___________________________________________________________________ Added: svn:keywords + "Author Date Id Revision HeadURL"

1 0

r166 - trunk/exports
by chatellier＠users.labs.libre-entreprise.org Aug. 25, 2009

Aug. 25, 2009

Author: chatellier Date: 2009-08-25 12:14:30 +0000 (Tue, 25 Aug 2009) New Revision: 166 Modified: trunk/exports/Abundances.java trunk/exports/Biomasses.java trunk/exports/MetierZone.java trunk/exports/OwnerMargin.java trunk/exports/VesselMargin.java Log: Mise ?\195?\160 jour de la description des exports Modified: trunk/exports/Abundances.java =================================================================== --- trunk/exports/Abundances.java 2009-08-25 12:07:41 UTC (rev 165) +++ trunk/exports/Abundances.java 2009-08-25 12:14:30 UTC (rev 166) @@ -48,7 +48,7 @@ } public String getDescription() { - return _("Export les abondances en nombre tableau avec des lignes pop;id;zone;date;nombre."); + return _("Exporte les abondances en nombre tableau avec des lignes pop;id;zone;date;nombre."); } public void export(SimulationStorage simulation, Writer out) throws Exception { Modified: trunk/exports/Biomasses.java =================================================================== --- trunk/exports/Biomasses.java 2009-08-25 12:07:41 UTC (rev 165) +++ trunk/exports/Biomasses.java 2009-08-25 12:14:30 UTC (rev 166) @@ -49,7 +49,7 @@ } public String getDescription() { - return _("Export les biomasses tableau avec des lignes pop;id;zone;date;nombre"); + return _("Exporte les biomasses tableau avec des lignes pop;id;zone;date;nombre"); } public void export(SimulationStorage simulation, Writer out) throws Exception { Modified: trunk/exports/MetierZone.java =================================================================== --- trunk/exports/MetierZone.java 2009-08-25 12:07:41 UTC (rev 165) +++ trunk/exports/MetierZone.java 2009-08-25 12:14:30 UTC (rev 166) @@ -10,11 +10,9 @@ import scripts.ResultName; -import fr.ifremer.isisfish.entities.*; import fr.ifremer.isisfish.export.Export; import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.datastore.SimulationStorage; -import fr.ifremer.isisfish.datastore.ResultStorage; /** * MetierZone.java Modified: trunk/exports/OwnerMargin.java =================================================================== --- trunk/exports/OwnerMargin.java 2009-08-25 12:07:41 UTC (rev 165) +++ trunk/exports/OwnerMargin.java 2009-08-25 12:14:30 UTC (rev 166) @@ -15,7 +15,6 @@ import fr.ifremer.isisfish.export.Export; import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.datastore.SimulationStorage; -import fr.ifremer.isisfish.datastore.ResultStorage; /** * OwnerMargin.java @@ -50,7 +49,7 @@ } public String getDescription() { - return _("cvs out strategy;date;value"); + return _("Exporte les profits du patrons, retourne un tableau strategy;date;value"); } public void export(SimulationStorage simulation, Writer out) throws Exception { Modified: trunk/exports/VesselMargin.java =================================================================== --- trunk/exports/VesselMargin.java 2009-08-25 12:07:41 UTC (rev 165) +++ trunk/exports/VesselMargin.java 2009-08-25 12:14:30 UTC (rev 166) @@ -15,7 +15,6 @@ import fr.ifremer.isisfish.export.Export; import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.datastore.SimulationStorage; -import fr.ifremer.isisfish.datastore.ResultStorage; /** * VesselMargin.java

1 0

r165 - trunk/analyseplans
by chatellier＠users.labs.libre-entreprise.org Aug. 25, 2009

Aug. 25, 2009

Author: chatellier Date: 2009-08-25 12:07:41 +0000 (Tue, 25 Aug 2009) New Revision: 165 Added: trunk/analyseplans/CalibrationSimplexePasVariable2Capturabilite.java trunk/analyseplans/ExempleSimulationsIndependantes.java Removed: trunk/analyseplans/Calibration.java trunk/analyseplans/Max.java Log: Rename analyse plans (update docs, etc...) Deleted: trunk/analyseplans/Calibration.java =================================================================== --- trunk/analyseplans/Calibration.java 2009-08-25 10:53:51 UTC (rev 164) +++ trunk/analyseplans/Calibration.java 2009-08-25 12:07:41 UTC (rev 165) @@ -1,370 +0,0 @@ -package analyseplans; - -import static org.codelutin.i18n.I18n._; - -import java.io.File; -import java.io.FileReader; -import java.util.ArrayList; -import java.util.Collections; -import java.util.List; - -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.codelutin.math.matrix.MatrixFactory; -import org.codelutin.math.matrix.MatrixIterator; -import org.codelutin.math.matrix.MatrixND; -import org.codelutin.topia.TopiaContext; -import org.codelutin.util.FileUtil; -import org.codelutin.util.StringUtil; - -import scripts.ResultName; -import fr.ifremer.isisfish.datastore.ResultStorage; -import fr.ifremer.isisfish.datastore.SimulationStorage; -import fr.ifremer.isisfish.entities.Population; -import fr.ifremer.isisfish.entities.PopulationGroup; -import fr.ifremer.isisfish.entities.PopulationSeasonInfo; -import fr.ifremer.isisfish.simulator.AnalysePlan; -import fr.ifremer.isisfish.simulator.AnalysePlanContext; -import fr.ifremer.isisfish.types.Month; -import fr.ifremer.isisfish.util.Doc; - -/** - * Calibration.java - * - * Created: 8 mars 2007 - * - * @author <> - * @version $Revision: 1.2 $ - * - * Last update: $Date: 2007-11-02 17:43:14 $ by : $Author: bpoussin $ - */ -public class Calibration implements AnalysePlan { - - /** to use log facility, just put in your code: log.info("..."); */ - static private Log log = LogFactory.getLog(Calibration.class); - - protected enum State { - STATE_INIT, STATE_0, STATE_1, STATE_2, STATE_3, STATE_4 - }; - - //parametres de la simu 3 points initiaux d un simplex d ordre 2 - @Doc(value = "do the doc of param Population") - public Population param_Population = null; - @Doc(value = "do the doc of param M1 (devient un parametre du plan d analyse)") - public String param_M1 = "1e-5;1e-6";// devient un parametre du plan d analyse - @Doc(value = "do the doc of param M2 (devient un parametre du plan d analyse)") - public String param_M2 = "2e-4;2e-5";// devient un parametre du plan d analyse - - @Doc(value = "do the doc of param M3 (devient un parametre du plan d analyse)") - public String param_M3 = "1e-4;1e-6";// devient un parametre du plan d analyse - @Doc(value = "do the doc of param pas (devient un parametre du plan d analyse)") - public String param_pas = "1e-5";// devient un parametre du plan d analyse - @Doc(value = "nom + chemin du fichier contenant les debarquements observes par groupe pour la derniere annee") - public String param_nomfichier_debarquements = "";//nom + chemin du fichier contenant les debarquements observes par groupe pour la derniere annee - - protected File debarquementsObserves; - protected MatrixND matrixDebarquement; - - protected State state = State.STATE_INIT; - protected Experiences experiences = new Experiences(); - - /** - * @return the experiences - */ - public Experiences getExperiences() { - return this.experiences; - } - - public String[] necessaryResult = { ResultName.MATRIX_LANDING_PER_MET }; - - @Override - public String[] getNecessaryResult() { - return this.necessaryResult; - } - - /** - * Permet d'afficher a l'utilisateur une aide sur le plan. - * - * @return L'aide ou la description du plan - */ - @Override - public String getDescription() throws Exception { - return _("Simplexe"); - } - - /** - * Appele au demarrage de la simulation, cette methode permet d'initialiser - * des valeurs - * - * @param simulation - * La simulation pour lequel on utilise cette regle - */ - @Override - public void init(AnalysePlanContext context) throws Exception { - if (param_nomfichier_debarquements == null - || "".equals(param_nomfichier_debarquements)) { - debarquementsObserves = FileUtil.getFile(".*.csv", - "fichier csv séparateur ';'"); - } else { - debarquementsObserves = new File(param_nomfichier_debarquements); - } - // int nbYear = context.getParam().getNumberOfYear(); - TopiaContext db = context.getParam().getRegion().getStorage() - .beginTransaction(); - Population pop = (Population) db.findByTopiaId(param_Population - .getTopiaId()); - - int nbGroup = pop.sizePopulationGroup(); - matrixDebarquement = MatrixFactory.getInstance().create( - new int[] { nbGroup }); - // List<PopulationGroup> groups = pop.getPopulationGroup(); - // matrixDebarquement = MatrixFactory.getInstance().create(new List[]{groups}); - - matrixDebarquement.importCSV(new FileReader(debarquementsObserves), - new int[] { 0 }); - db.closeContext(); - } - - /** - * Call before each simulation - * - * @param context - * plan context - * @param nextSimulation - * storage used for next simulation - * @return true if we must do next simulation, false to stop plan - * @throws Exception - */ - @Override - public boolean beforeSimulation(AnalysePlanContext context, - SimulationStorage nextSimulation) throws Exception { - boolean doNext = true; - - int number = context.getNumber(); - - if (number < 3) { - String[] M1 = param_M1.split(";"); - String[] M2 = param_M2.split(";"); - String[] M3 = param_M3.split(";"); - double[] q1 = StringUtil.toArrayDouble(M1[0], M2[0], M3[0]); - double[] q2 = StringUtil.toArrayDouble(M1[1], M2[1], M3[1]); - - experiences.getExperience(number).q1 = q1[number]; - experiences.getExperience(number).q2 = q2[number]; - - changeDB(experiences.getExperience(number), nextSimulation); - } else { - double q1 = 0; - double q2 = 0; - - double lastCritere = experiences.getExperience(number - 1).criteria; - double g1 = (experiences.current.get(2).q1 + experiences.current - .get(1).q1) / 2.0; - double g2 = (experiences.current.get(2).q2 + experiences.current - .get(1).q2) / 2.0; - - double worst1 = experiences.current.get(0).q1; - double worst2 = experiences.current.get(0).q2; - - if (state == State.STATE_INIT) { - // on fait la 4eme simulation dans tous les cas - state = State.STATE_0; - Collections.sort(experiences.current); - q1 = 2 * g1 - worst1; - q2 = 2 * g2 - worst2; - } else if (state == State.STATE_0) { - // on fait la 5eme avec des q qui dependent de la 4eme dans le dernier cas - if (lastCritere < experiences.current.get(0).criteria) { - state = State.STATE_1; - q1 = g1 - (g1 - worst1) / 2.0; - q2 = g2 - (g2 - worst2) / 2.0; - } else if (lastCritere < experiences.current.get(1).criteria) { - state = State.STATE_2; - q1 = g1 + (g1 - worst1) / 2.0; - q2 = g2 + (g2 - worst2) / 2.0; - } else if (lastCritere < experiences.current.get(2).criteria) { - state = State.STATE_INIT; - experiences.current.remove(3); - } else { // dernier cas possible: if (lastCritere > experiences.current.get(2).critere) { - state = State.STATE_4; - q1 = experiences.current.get(3).q1 + g1 - worst1; - q2 = experiences.current.get(3).q2 + g2 - worst2; - } - } else if (state == State.STATE_1) { - // la derniere simulation a ete faite - if (lastCritere > experiences.current.get(0).criteria) { - experiences.current.remove(3); - experiences.current.remove(0); - } else { - // FIXME on supprime les 2 derniere qui vient d'etre faite, on risque donc de boucler - experiences.current.remove(4); - experiences.current.remove(3); - doNext = false; - } - state = State.STATE_INIT; - } else if (state == State.STATE_2) { - if (lastCritere > experiences.current.get(0).criteria) { - experiences.current.remove(3); - experiences.current.remove(0); - } else { - // FIXME on supprime les 2 derniere qui vient d'etre faite, on risque donc de boucler - experiences.current.remove(4); - experiences.current.remove(3); - doNext = false; - } - state = State.STATE_INIT; - } else if (state == State.STATE_4) { - if (lastCritere > experiences.current.get(3).criteria) { - experiences.current.remove(3); - experiences.current.remove(0); - } else { - experiences.current.remove(4); - experiences.current.remove(0); - } - state = State.STATE_INIT; - } - - experiences.getExperience(number).q1 = q1; - experiences.getExperience(number).q2 = q2; - - changeDB(experiences.getExperience(number), nextSimulation); - } - - return doNext; - } - - /** - * Call after each simulation, compute criteria for last simulation - * - * @param context - * plan context - * @param nextSimulation - * storage used for next simulation - * @return true if we must do next simulation, false to stop plan - * @throws Exception - */ - @Override - public boolean afterSimulation(AnalysePlanContext context, - SimulationStorage lastSimulation) throws Exception { - boolean doNext = true; - - int number = context.getNumber(); - - ResultStorage result = lastSimulation.getResultStorage(); - log.fatal("sim: " + lastSimulation + " result: " + result); - MatrixND L = result.getMatrix(param_Population, - ResultName.MATRIX_LANDING_PER_MET); - L = L.sumOverDim(0);// sum sur les mois, si on ajoute le pas (12) on peut sommer sur les annees - L = L.sumOverDim(1);// sum sur les strategies - L = L.sumOverDim(3);// sum sur les metiers - L = L.sumOverDim(4);// sum sur les zones - L = L.reduce(); // supprime les dim qui n ont qu un element - - double crit = 0; - for (MatrixIterator g = L.iterator(); g.hasNext();) { - g.next(); - int[] dim = g.getCoordinates(); - double obs = matrixDebarquement.getValue(dim); - double simules = g.getValue(); - crit += Math.pow(obs - simules, 2); - } - experiences.getExperience(number).criteria = crit; - - return doNext; - } - - /** - * Modify nextSimulation database with q1 and q2 in exp. - * - * @param exp - * @param nextSimulation - * @throws Exception - */ - protected void changeDB(Experience exp, SimulationStorage nextSimulation) - throws Exception { - TopiaContext db = nextSimulation.getStorage().beginTransaction();//ouvrir un context pour modifier les donnees - Population pop = (Population) db.findByTopiaId(param_Population - .getTopiaId()); - // autre solution moins efficace: - // PopulationDAO popDAO = IsisFishDAOHelper.getPopulationDAO(db); - // Population Nephrops = dao.findByName(param_Population.getName()); - - MatrixND c = pop.getCapturability(); - - for (MatrixIterator i = c.iterator(); i.hasNext();) { - i.next(); - - Object[] sem = i.getSemanticsCoordinates(); - PopulationGroup group = (PopulationGroup) sem[0]; - PopulationSeasonInfo season = (PopulationSeasonInfo) sem[1]; - - if (season.getFirstMonth().after(Month.JULY) && group.getId() >= 18) { //mois >= aout - i.setValue(exp.q2); - } else { - i.setValue(exp.q1); - } - } - db.commitTransaction(); - db.closeContext(); - } - - public class Experiences { - /** contains last simplex and potentialy 2 more simulation */ - protected List<Experience> current = new ArrayList<Experience>(); - /** contains all experience done */ - protected List<Experience> history = new ArrayList<Experience>(); - - /** - * @return the history - */ - public List<Experience> getHistory() { - return this.history; - } - - /** - * return experience requested, if this experience doesn't exist create - * it. - * - * @param i - * simulation number - * @return experience with simulation number fixed if new experience is - * returned - */ - public Experience getExperience(int i) { - Experience result; - if (i < history.size()) { - result = history.get(i); - } else { - result = new Experience(); - result.simNumber = i; - history.add(i, result); - current.add(result); - } - return result; - } - } - - /** - * Use to keep q1, q2 and criteria of simulation - * - * @author poussin - */ - public class Experience implements Comparable { - public int simNumber; - public double criteria; - public double q1; - public double q2; - - /** - * Permit to order experience, first is experience with smallest - * criteria - */ - @Override - public int compareTo(Object arg0) { - Experience other = (Experience) arg0; - int result = Double.compare(this.criteria, other.criteria); - return result; - } - } - -} Copied: trunk/analyseplans/CalibrationSimplexePasVariable2Capturabilite.java (from rev 161, trunk/analyseplans/Calibration.java) =================================================================== --- trunk/analyseplans/CalibrationSimplexePasVariable2Capturabilite.java (rev 0) +++ trunk/analyseplans/CalibrationSimplexePasVariable2Capturabilite.java 2009-08-25 12:07:41 UTC (rev 165) @@ -0,0 +1,481 @@ +package analyseplans; + +import static org.codelutin.i18n.I18n._; + +import java.io.File; +import java.io.FileReader; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collections; +import java.util.List; + +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.codelutin.math.matrix.MatrixFactory; +import org.codelutin.math.matrix.MatrixIterator; +import org.codelutin.math.matrix.MatrixND; +import org.codelutin.topia.TopiaContext; +import org.codelutin.util.FileUtil; +import org.codelutin.util.StringUtil; + +import scripts.ResultName; +import fr.ifremer.isisfish.datastore.ResultStorage; +import fr.ifremer.isisfish.datastore.SimulationStorage; +import fr.ifremer.isisfish.entities.Population; +import fr.ifremer.isisfish.entities.PopulationGroup; +import fr.ifremer.isisfish.entities.PopulationSeasonInfo; +import fr.ifremer.isisfish.simulator.AnalysePlan; +import fr.ifremer.isisfish.simulator.AnalysePlanContext; +import fr.ifremer.isisfish.util.Doc; + +/** + * CalibrationSimplexePasVariable2Capturabilite. + * + * Created: 17 septembre 2007 + * + * @author <> + * @version $Revision: 1.27 $ + * + * Last update: $Date: 2007/05/24 09:29:18 $ + * by : $Author: bpoussin $ + */ +/////***You can modify class name if you want +/////***BUT attention : file name and class name must be the same (without the extention ".java"), ie here : "CalibrationSimplexePasVariable2Capturabilite" +public class CalibrationSimplexePasVariable2Capturabilite implements + AnalysePlan { + + /** to use log facility, just put in your code: log.info("..."); */ + static private Log log = LogFactory + .getLog(CalibrationSimplexePasVariable2Capturabilite.class); + + enum State { + STATE_INIT, STATE_0, STATE_1, STATE_2, STATE_3, STATE_4 + }; + + /////***here must appear the path to export the historic file ("Historic.csv") + //where q1, q2 and criteria computed at each simulation are written + /////***Attention : before beginning a new calibration rename your eventual + //old file Historic.csv otherwise it will be lost + protected File exportHistoric = new File("Historic.csv"); + protected String exportHisto = ""; + + @Doc("Population which parameters are calibrated") + public Population param_Population = null; + @Doc("First initial point of the simplex: de la forme(\"xx;yy\")") + public String param_M1 = "2.42e-5;2.11e-6";// devient un parametre du plan d analyse + @Doc("Second initial point of the simplex") + public String param_M2 = "2.34e-5;2.59e-6";// devient un parametre du plan d analyse + @Doc("Third initial point of the simplex") + public String param_M3 = "2.59e-5;2.41e-6";// devient un parametre du plan d analyse + + ///// ***put here the path and name of the file containing the data on which you calibrate your fichery ( here observed catches) + @Doc(value = "file name and path of observed landings") + public String param_nomfichier_debarquements = "Observedlandings2001-2003.csv";//in row : time ; in columns : age or length group + protected File debarquementsObserves; + protected MatrixND matrixDebarquement; + + protected State state = State.STATE_INIT; + public Experiences experiences = new Experiences(); + public String[] necessaryResult = { ResultName.MATRIX_CATCH_WEIGHT_PER_STRATEGY_MET_PER_ZONE_POP }; + + public String[] getNecessaryResult() { + return this.necessaryResult; + } + + /** + * Permet d'afficher a l'utilisateur une aide sur le plan. + * @return L'aide ou la description du plan + */ + public String getDescription() throws Exception { + return _("Calibration using variable step Simplex method (Walters): user gives a file of observations (here catches) by time step and group (.csv), output will try to approach oservations by changing the values of catchability"); + } + + /** + * Appele au demarrage de la simulation, cette methode permet d'initialiser + * des valeurs + * @param context La simulation pour lequel on utilise cette regle + */ + public void init(AnalysePlanContext context) throws Exception { + if (param_nomfichier_debarquements == null || "".equals(param_nomfichier_debarquements)) { + debarquementsObserves = FileUtil.getFile(".*.csv", "fichier csv séparateur ';'"); + } else { + debarquementsObserves = new File(param_nomfichier_debarquements); + } + int nbYear = context.getParam().getNumberOfYear(); + + //TopiaContext db = context.getParam().getRegion().getStorage().beginTransaction(); + //Population pop = (Population) db.findByTopiaId(param_Population.getTopiaId()); + + /////*** specify dimention of the matrix containning observations (observed landings for instance) + /////*** numbers of group/columns : could be equal to your number of classes in ISIS but may also be different if your had only aggregated data + int nbGroup = 4; + /////*** enter number of observation per year (if you have observation by quarter put 4) / lines of the observations file + int nbTrim = nbYear * 4; + int[] dimMatrix = { nbTrim, nbGroup }; + matrixDebarquement = MatrixFactory.getInstance().create(dimMatrix); + //matrixDebarquement = MatrixFactory.getInstance().create(new int[]{nbGroup}); + // List<PopulationGroup> groups = pop.getPopulationGroup(); + // matrixDebarquement = MatrixFactory.getInstance().create(new List[]{groups}); + matrixDebarquement.importCSV(new FileReader(debarquementsObserves), new int[] { 0, 0 }); + log.info("MatrixDebarquement : " + matrixDebarquement); + //db.closeContext(); + } + + double g1; + double g2; + double worst1; + double worst2; + + /** + * Call before each simulation + * @param context plan context + * @param nextSimulation storage used for next simulation + * @return true if we must do next simulation, false to stop plan + * @throws Exception + */ + public boolean beforeSimulation(AnalysePlanContext context, + SimulationStorage nextSimulation) throws Exception { + boolean doNext = true; + boolean doBoucle = true; + log.info("before simulation"); + + int number = context.getNumber(); + + if (number < 3) { + log.info("number<3"); + + String[] M1 = param_M1.split(";"); + String[] M2 = param_M2.split(";"); + String[] M3 = param_M3.split(";"); + + double[] q1 = StringUtil.toArrayDouble(M1[0], M2[0], M3[0]); + double[] q2 = StringUtil.toArrayDouble(M1[1], M2[1], M3[1]); + experiences.getExperience(number).q1 = q1[number]; + experiences.getExperience(number).q2 = q2[number]; + + changeDB(experiences.getExperience(number), nextSimulation); + + } else { + + double q1 = 1000; + double q2 = 1000; + double lastCritere = experiences.getExperience(number - 1).criteria; + while (doBoucle) { + doBoucle = false; + if (state == State.STATE_INIT) { + doBoucle = false; + log.info("state init"); + + //ordonne les 3 premieres experiences selon leur critere + Collections.sort(experiences.current); + //log.info("SIMPLEXE : current 0 = " + experiences.current.get(0).criteria + "current 1 = " + experiences.current.get(1).criteria + "current 2 = " + experiences.current.get(2).criteria ); + log.info("SIMPLEXE : current 0 = " + + experiences.current.get(0).criteria + + "current 1 = " + + experiences.current.get(1).criteria + + "current 2 = " + + experiences.current.get(2).criteria); + log.info("SIMPLEXE : Best q1 = " + + experiences.current.get(0).q1 + " q2 = " + + experiences.current.get(0).q2); + log.info("SIMPLEXE : NextBest q1 = " + + experiences.current.get(1).q1 + " q2 = " + + experiences.current.get(1).q2); + log.info("SIMPLEXE : Worst q1 = " + + experiences.current.get(2).q1 + " q2 = " + + experiences.current.get(2).q2); + + //Calcul et evaluation de R + double g1 = (experiences.current.get(0).q1 + experiences.current + .get(1).q1) / 2.0; + double g2 = (experiences.current.get(0).q2 + experiences.current + .get(1).q2) / 2.0; + double worst1 = experiences.current.get(2).q1; + double worst2 = experiences.current.get(2).q2; + + state = State.STATE_0; + + q1 = 2 * g1 - worst1; + q2 = 2 * g2 - worst2; + + log.info("R : q1 = " + q1 + " q2 = " + q2); + + } else if (state == State.STATE_0) { + doBoucle = false; + log.info("state 0"); + + // on fait la 5eme avec des q qui dependent de la 4eme dans le dernier cas + //log.info("g1 = " + g1 + " " + "g2 = " + g2); + //log.info("worst1 = " + worst1 + " " + "worst2 = " + worst2); + + if (lastCritere > experiences.current.get(2).criteria) { + log.info("State 0 : R : lastCtritere > current2 : R pire de W"); + state = State.STATE_1; + //calcul de Cw + q1 = ((experiences.current.get(0).q1 + experiences.current + .get(1).q1) / 2.0) + - (((experiences.current.get(0).q1 + experiences.current + .get(1).q1) / 2.0) - experiences.current + .get(2).q1) / 2.0; + q2 = ((experiences.current.get(0).q2 + experiences.current + .get(1).q2) / 2.0) + - (((experiences.current.get(0).q2 + experiences.current + .get(1).q2) / 2.0) - experiences.current + .get(2).q2) / 2.0; + log.info("Cw : q1 = " + q1 + " q2 = " + q2); + + } else if (lastCritere > experiences.current.get(1).criteria) { + log.info("State 0 :R : lastCritere > current 1 : R meilleur que W et moins bon que N"); + state = State.STATE_2; + // calcul de Cr + q1 = ((experiences.current.get(0).q1 + experiences.current + .get(1).q1) / 2.0) + + (((experiences.current.get(0).q1 + experiences.current + .get(1).q1) / 2.0) - experiences.current + .get(2).q1) / 2.0; + q2 = ((experiences.current.get(0).q2 + experiences.current + .get(1).q2) / 2.0) + + (((experiences.current.get(0).q2 + experiences.current + .get(1).q2) / 2.0) - experiences.current + .get(2).q2) / 2.0; + log.info("Cr : q1 = " + q1 + " q2 = " + q2); + + } else if (lastCritere > experiences.current.get(0).criteria) { + log.info("State 0 :R : lastCritere > current0 : R meilleur que N et moins bon que B"); + state = State.STATE_INIT; + experiences.current.remove(2);//remove(3)avant + doBoucle = true; + log.info("remove W, simplex BNR"); + + } else { // dernier cas possible: if (lastCritere < experiences.current.get(0).critere) { + log.info("State 0 :R : lastCritere < current 0 : R meilleur que B, calcul de E"); + state = State.STATE_4; + + q1 = experiences.getExperience(number - 1).q1 + + (experiences.current.get(0).q1 + experiences.current + .get(1).q1) / 2.0 + - experiences.current.get(2).q1; + q2 = experiences.getExperience(number - 1).q2 + + (experiences.current.get(0).q2 + experiences.current + .get(1).q2) / 2.0 + - experiences.current.get(2).q2; + //q1 = experiences.current.get(3).q1 + (experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0 - experiences.current.get(2).q1; + //q2 = experiences.current.get(3).q2 + (experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0 - experiences.current.get(2).q2; + log.info("E : q1 = " + q1 + " q2 = " + q2); + } + + } else if (state == State.STATE_1) { + log.info("state 1, simplex BNCw"); + experiences.current.remove(3); + experiences.current.remove(2); + state = State.STATE_INIT; + doBoucle = true; + + } else if (state == State.STATE_2) { + log.info("state 2, simplex BNCr"); + experiences.current.remove(3); + experiences.current.remove(2); + state = State.STATE_INIT; + doBoucle = true; + + } else if (state == State.STATE_4) { + log.info("state 4 :comparaison de E a B"); + doBoucle = true; + if (lastCritere < experiences.current.get(0).criteria) { + log.info("E meilleur que B, remove 2 et 3 : simplex BNE"); + experiences.current.remove(3); + experiences.current.remove(2); + } else { + log.info("E moins bon que B, remove 2 et 4, simplex BNR"); + experiences.current.remove(4); + experiences.current.remove(2); + } + + state = State.STATE_INIT; + } + + }//fin du while + //on remplit la table experiences + experiences.getExperience(number).q1 = q1; + experiences.getExperience(number).q2 = q2; + + log.info("on change Q dans la DB avec : q1 = " + q1 + " " + "q2 = " + q2); + + // on change la valeur de q dans la DB + changeDB(experiences.getExperience(number), nextSimulation); + }// fin du else (number > 3) + return doNext; + }// fin du before simulation + + /** + + * Call after each simulation, compute criteria for last simulation + * @param context plan context + * @param lastSimulation storage used for next simulation + * @return true if we must do next simulation, false to stop plan + * @throws Exception + */ + public boolean afterSimulation(AnalysePlanContext context, + SimulationStorage lastSimulation) throws Exception { + boolean doNext = true; + log.info("after simulation"); + int number = context.getNumber(); + ResultStorage result = lastSimulation.getResultStorage(); + + /////*** Simulated catches are cumulated over strategies, areas and metiers + + MatrixND L2 = result.getMatrix(param_Population, + ResultName.MATRIX_CATCH_WEIGHT_PER_STRATEGY_MET_PER_ZONE_POP); + // log.info("dim de L2" + " " + Arrays.toString(L2.getDim())); + /////*** If some strategies, metiers or areas must not be included in the cumulated catches see below else put "//" at the beginning of line 297 and replace "L2" by "L" at line 289 + /////*** the strategies or so to exclude must be at the begining or end of the list you enter in the parameters interface + /////*** fill the line MatrixND L = L2.getSubMatrix(a,b,c).copy(); as follow : + /////*** a = 1 if you want to exclude strategies, 2 if metiers and 4 if areas + /////*** b = indice of the first object considered + /////*** c = number of object to keep after b, b included + MatrixND L = L2.getSubMatrix(1, 2, 4).copy(); // for instance : keep strategies 2,3,4,5 + //log.info("sous matrice extraite"); + L = L.sumOverDim(1);// sum over strategies + L = L.sumOverDim(2);// sum over metiers + L = L.sumOverDim(4);// sum over zones + log.info("sommes sur les strategies, metiers et zones faites"); + + /////*** if observations are cumulated by groups else put "//" at the beginning of the following line + L = L.sumOverDim(3); + /////*** else if number of groups in your database differs from number of groups in observations ... write me an e-mail + + ////*** if observations are cumulated over quarter put 3, over year 12, else put "//" at the beginning of the following line + L = L.sumOverDim(0, 3); + + L = L.reduce(); + + ///////////////////Calcul du critere////////////////// + log.info("calcul du critere"); + log.info("dim de L" + " " + Arrays.toString(L.getDim())); + log.info("dim de obs" + " " + + Arrays.toString(matrixDebarquement.getDim())); + double crit = 0; + for (MatrixIterator g = L.iterator(); g.hasNext();) { + g.next(); + //boucle sur les trimestres et les classes d age + + int[] dim = g.getCoordinates(); + + double obs = matrixDebarquement.getValue(dim); + double simules = g.getValue(); + + crit += Math.pow(obs - simules, 2); // crit = crit + (obs-simules)^2 + }// fin du for + log.info("critere " + number + " = " + crit); + + //ajoute le critere dans la table experiences + experiences.getExperience(number).criteria = crit; + + //ecriture de la table historic + exportHisto += experiences.getExperience(number).q1 + ";" + + experiences.getExperience(number).q2 + ";" + + experiences.getExperience(number).criteria + "\n"; + org.codelutin.util.FileUtil.writeString(exportHistoric, exportHisto); + + return doNext; + + }// fin du after simulation + + /** + * Modify nextSimulation database with q1 and q2 in exp. + * + * @param exp + * @param nextSimulation + * @throws Exception + */ + protected void changeDB(Experience exp, SimulationStorage nextSimulation) + throws Exception { + //methode appelee dans before simualtion + TopiaContext db = nextSimulation.getStorage().beginTransaction();//ouvrir un context pour modifier les donnees + Population pop = (Population) db.findByTopiaId(param_Population.getTopiaId()); //reccupere la pop ciblee + MatrixND c = pop.getCapturability(); // reccupere la matrice de capturabilité + + //log.info("Pour cette simulation : q1 = " + exp.q1 + ";" + "q2 = " + exp.q2 ); + + /////*** that is where you explain how to fill the catchability matrix with q1 and q2 + for (MatrixIterator i = c.iterator(); i.hasNext();) { + i.next(); + Object[] sem = i.getSemanticsCoordinates(); + PopulationGroup group = (PopulationGroup) sem[0]; + //PopulationSeasonInfo season = (PopulationSeasonInfo) sem[1]; + + ////*** exemple when q2 corresponds to the 12 first groups (groups 0 to 11) + if (group.getId() < 12) { + i.setValue(exp.q2); + } else { + i.setValue(exp.q1); + } + + /////*** exemple when it depends on seasons and groups + /* if (season.getFirstMonth().after(Month.JULY) && group.getId() >=18){ //month >= aout && groupID >= 18 + i.setValue(exp.q2); + }else { + i.setValue(exp.q1); + } + */ + + }//fin du for + + db.commitTransaction(); // effectue la modification + db.closeContext(); // ferme le context + } + + static public class Experiences { + // cree la liste experiences ou sont stoqués q1,q2 et critere pour chaque simulation + + /** contains last simplex and potentialy 2 more simulation */ + public List<Experience> current = new ArrayList<Experience>(); + + /** contains all experience done */ + public List<Experience> history = new ArrayList<Experience>(); + + /** + * return experience requested, if this experience doesn't exist + * create it. + * + * @param i simulation number + * @return experience with simulation number fixed if new experience + * is returned + */ + public Experience getExperience(int i) { + Experience result; + if (i < history.size()) { + result = history.get(i); + } else { + result = new Experience(); + result.simNumber = i; + history.add(i, result); + current.add(result); + } + return result; + }//fin de la definition de getExperience + + /** + * @return the history + */ + public List<Experience> getHistory() { + return this.history; + } + }// fin de la creation des listes experiences + + static public class Experience implements Comparable<Experience> { + public int simNumber; + public double criteria; + public double q1; + public double q2; + + /** + * Permit to order experience, first is experience with smallest criteria + */ + public int compareTo(Experience other) { + int result = Double.compare(this.criteria, other.criteria); + return result; + } + } + +} \ No newline at end of file Copied: trunk/analyseplans/ExempleSimulationsIndependantes.java (from rev 161, trunk/analyseplans/Max.java) =================================================================== --- trunk/analyseplans/ExempleSimulationsIndependantes.java (rev 0) +++ trunk/analyseplans/ExempleSimulationsIndependantes.java 2009-08-25 12:07:41 UTC (rev 165) @@ -0,0 +1,96 @@ +package analyseplans; + +import static org.codelutin.i18n.I18n._; + +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; + +import fr.ifremer.isisfish.datastore.SimulationStorage; +import fr.ifremer.isisfish.simulator.AnalysePlanContext; +import fr.ifremer.isisfish.simulator.AnalysePlanIndependent; +import fr.ifremer.isisfish.util.Doc; + +/** + * ExempleSimulationsIndependantes.java + * + * Created: 2 mars 2007 + * + * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> + * @version $Revision: 1.2 $ + * + * Last update: $Date: 2007-03-09 15:27:21 $ by : $Author: bpoussin $ + */ +public class ExempleSimulationsIndependantes implements AnalysePlanIndependent { + + /** to use log facility, just put in your code: log.info("..."); */ + static private Log log = LogFactory.getLog(ExempleSimulationsIndependantes.class); + + @Doc(value = "do the doc of param max") + public int param_max = 10; + + public String[] necessaryResult = { + // put here all necessary result for this rule + // example: + // ResultName.MATRIX_BIOMASS, + // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, + }; + + @Override + public String[] getNecessaryResult() { + return this.necessaryResult; + } + + /** + * Permet d'afficher a l'utilisateur une aide sur le plan. + * + * @return L'aide ou la description du plan + */ + @Override + public String getDescription() throws Exception { + return _("Permit to specify maximum simulation numbers"); + } + + /** + * Appelé au démarrage de la simulation, cette méthode permet d'initialiser + * des valeurs + * + * @param context La simulation pour lequel on utilise cette regle + */ + @Override + public void init(AnalysePlanContext context) throws Exception { + + } + + /** + * Call before each simulation + * + * @param context + * plan context + * @param nextSimulation + * storage used for next simulation + * @return true if we must do next simulation, false to stop plan + * @throws Exception + */ + @Override + public boolean beforeSimulation(AnalysePlanContext context, + SimulationStorage nextSimulation) throws Exception { + boolean result = context.getNumber() < param_max; + return result; + } + + /** + * Call after each simulation + * + * @param context + * plan context + * @param lastSimulation storage used for last simulation + * @return true if we must do next simulation, false to stop plan + * @throws Exception + */ + @Override + public boolean afterSimulation(AnalysePlanContext context, + SimulationStorage lastSimulation) throws Exception { + return true; + } + +} Deleted: trunk/analyseplans/Max.java =================================================================== --- trunk/analyseplans/Max.java 2009-08-25 10:53:51 UTC (rev 164) +++ trunk/analyseplans/Max.java 2009-08-25 12:07:41 UTC (rev 165) @@ -1,96 +0,0 @@ -package analyseplans; - -import static org.codelutin.i18n.I18n._; - -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; - -import fr.ifremer.isisfish.datastore.SimulationStorage; -import fr.ifremer.isisfish.simulator.AnalysePlanContext; -import fr.ifremer.isisfish.simulator.AnalysePlanIndependent; -import fr.ifremer.isisfish.util.Doc; - -/** - * Max.java - * - * Created: 2 mars 2007 - * - * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> - * @version $Revision: 1.2 $ - * - * Last update: $Date: 2007-03-09 15:27:21 $ by : $Author: bpoussin $ - */ -public class Max implements AnalysePlanIndependent { - - /** to use log facility, just put in your code: log.info("..."); */ - static private Log log = LogFactory.getLog(Max.class); - - @Doc(value = "do the doc of param max") - public int param_max = 10; - - public String[] necessaryResult = { - // put here all necessary result for this rule - // example: - // ResultName.MATRIX_BIOMASS, - // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, - }; - - @Override - public String[] getNecessaryResult() { - return this.necessaryResult; - } - - /** - * Permet d'afficher a l'utilisateur une aide sur le plan. - * - * @return L'aide ou la description du plan - */ - @Override - public String getDescription() throws Exception { - return _("Permit to specify maximum simulation numbers"); - } - - /** - * Appelé au démarrage de la simulation, cette méthode permet d'initialiser - * des valeurs - * - * @param context La simulation pour lequel on utilise cette regle - */ - @Override - public void init(AnalysePlanContext context) throws Exception { - - } - - /** - * Call before each simulation - * - * @param context - * plan context - * @param nextSimulation - * storage used for next simulation - * @return true if we must do next simulation, false to stop plan - * @throws Exception - */ - @Override - public boolean beforeSimulation(AnalysePlanContext context, - SimulationStorage nextSimulation) throws Exception { - boolean result = context.getNumber() < param_max; - return result; - } - - /** - * Call after each simulation - * - * @param context - * plan context - * @param lastSimulation storage used for last simulation - * @return true if we must do next simulation, false to stop plan - * @throws Exception - */ - @Override - public boolean afterSimulation(AnalysePlanContext context, - SimulationStorage lastSimulation) throws Exception { - return true; - } - -}

1 0

r164 - trunk/exports
by chatellier＠users.labs.libre-entreprise.org Aug. 25, 2009

Aug. 25, 2009

Author: chatellier Date: 2009-08-25 10:53:51 +0000 (Tue, 25 Aug 2009) New Revision: 164 Removed: trunk/exports/GrossValueOfLandingsOtherSpecies.java Log: Suppression de ce script (li?\195?\169 a une regles non g?\195?\169n?\195?\169rique) Deleted: trunk/exports/GrossValueOfLandingsOtherSpecies.java =================================================================== --- trunk/exports/GrossValueOfLandingsOtherSpecies.java 2009-08-25 10:01:22 UTC (rev 163) +++ trunk/exports/GrossValueOfLandingsOtherSpecies.java 2009-08-25 10:53:51 UTC (rev 164) @@ -1,102 +0,0 @@ -package exports; - -import static org.codelutin.i18n.I18n._; - -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; - -import java.io.Writer; - -import org.codelutin.math.matrix.*; - -import scripts.ResultName; - -import fr.ifremer.isisfish.entities.*; -import fr.ifremer.isisfish.export.Export; -import fr.ifremer.isisfish.types.Date; -import fr.ifremer.isisfish.datastore.SimulationStorage; - -/** - * GrossValueOfLandingsOtherSpecies.java - * - * Created: 23 novembre 2006 - * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> - * @version $Revision: 1.3 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ - * by : $Author: bpoussin $ - */ -public class GrossValueOfLandingsOtherSpecies implements Export { - - /** to use log facility, just put in your code: log.info("..."); */ - static private Log log = LogFactory.getLog(GrossValueOfLandingsOtherSpecies.class); - - protected String [] necessaryResult = { - ResultName.MATRIX_GROSS_VALUE_OF_LANDINGS_OTHER_SPECIES_PER_STRATEGY_MET - }; - - public String[] getNecessaryResult() { - return this.necessaryResult; - } - - public String getExportFilename() { - return "GrossValueOfLandingsOtherSpecies"; - } - - public String getExtensionFilename() { - return ".csv"; - } - - public String getDescription() { - return _("CSV out strategy;metier;date;value (rule GraviteVPUE1LangEtGrossValueOtherSpeciesECOMOD must be selected for this export)"); - } - - public void export(SimulationStorage simulation, Writer out) throws Exception { - MatrixND mat = simulation.getResultStorage().getMatrix(ResultName.MATRIX_GROSS_VALUE_OF_LANDINGS_OTHER_SPECIES_PER_STRATEGY_MET); - if (mat == null) { - if (log.isWarnEnabled()) { - log.warn(_("Can't export GrossValueOfLandingsOtherSpecies, no '" + - ResultName.MATRIX_GROSS_VALUE_OF_LANDINGS_OTHER_SPECIES_PER_STRATEGY_MET + "' result")); - } - } - else { - for (MatrixIterator i=mat.iterator(); i.hasNext();) { - i.next(); - Object [] sems = i.getSemanticsCoordinates(); - Date date = (Date)sems[0]; - Strategy str = (Strategy)sems[1]; - Metier met = (Metier) sems[2]; - double val = i.getValue(); - out.write(str.getName() +";"+met.getName() +";"+ date.getDate() +";"+ val +"\n"); - } - } - /* -var Parametre=sim.getParametre(); -var PDate=Packages.fr.ifremer.nodb.Date; -var finsimu=resultats.getLastDate().getDate(); - - -var result=""; -writeln("debut export vesselmargin"); -var dateexport=new Packages.java.util.Date(); -var formatteur= new Packages.java.text.SimpleDateFormat(); -writeln("heure de debut: "+formatteur.format(dateexport)); - - -for (var idate=0;idate<=finsimu;idate++){ - var date=new PDate(idate); - var matrice=resultats.getMatrix(date, "matriceVesselMarginOverVariableCostsPerStrategyPerVessel"); - for(var iiterateur=matrice.iterator(); iiterateur.next();){ - var coordonnees=iiterateur.getSemanticsCoordinates(); - var str=coordonnees[0]; - result+=str.getName()+";"+idate+";"+iiterateur.getValue()+"\n"; - } -} -writeln("fin export vesselmargin"); - -return ""+result; -*/ - } - -}

1 0

r163 - trunk/rules
by chatellier＠users.labs.libre-entreprise.org Aug. 25, 2009

Aug. 25, 2009

Author: chatellier Date: 2009-08-25 10:01:22 +0000 (Tue, 25 Aug 2009) New Revision: 163 Removed: trunk/rules/GraviteVPUE1LangEtGrossValueOtherSpeciesECOMOD.java Log: Suppression de GraviteAnchois (non g?\195?\169n?\195?\169rique) Deleted: trunk/rules/GraviteVPUE1LangEtGrossValueOtherSpeciesECOMOD.java =================================================================== --- trunk/rules/GraviteVPUE1LangEtGrossValueOtherSpeciesECOMOD.java 2009-08-25 09:59:39 UTC (rev 162) +++ trunk/rules/GraviteVPUE1LangEtGrossValueOtherSpeciesECOMOD.java 2009-08-25 10:01:22 UTC (rev 163) @@ -1,547 +0,0 @@ -package rules; - -import static org.codelutin.i18n.I18n._; -import static org.codelutin.i18n.I18n.n_; - -import java.io.File; -import java.io.FileReader; -import java.util.Arrays; -import java.util.Collection; -import java.util.List; -import java.util.Map; - -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.codelutin.math.matrix.MapFunction; -import org.codelutin.math.matrix.MatrixFactory; -import org.codelutin.math.matrix.MatrixND; -import org.codelutin.util.FileUtil; - -import scripts.ResultName; -import scripts.SiMatrix; -import fr.ifremer.isisfish.datastore.ResultStorage; -import fr.ifremer.isisfish.entities.EffortDescription; -import fr.ifremer.isisfish.entities.Metier; -import fr.ifremer.isisfish.entities.Population; -import fr.ifremer.isisfish.entities.Strategy; -import fr.ifremer.isisfish.entities.StrategyMonthInfo; -import fr.ifremer.isisfish.rule.AbstractRule; -import fr.ifremer.isisfish.simulator.SimulationContext; -import fr.ifremer.isisfish.types.Date; -import fr.ifremer.isisfish.types.Month; -import fr.ifremer.isisfish.util.Doc; - -/** - * GraviteVPUE1Anchois.java - * - * Created: 26 aout 2008 - * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> - * @version $Revision: 1.2 $ - * - * Last update: $Date: 2008-10-23 08:59:38 $ by : $Author: Stephanie $ - */ -public class GraviteVPUE1LangEtGrossValueOtherSpeciesECOMOD extends - AbstractRule { - /** to use log facility, just put in your code: log.info("..."); */ - static private Log log = LogFactory - .getLog(GraviteVPUE1LangEtGrossValueOtherSpeciesECOMOD.class); - - @Doc(value = "do the doc of param coeffOthers0") - public String param_nomfichier_coeffOthers0 = "Inputs_Langoustine/CoeffOthers_Intercept_Langoustine/CoeffOthersNephrops.csv"; - @Doc(value = "do the doc of param coeffOthers1") - public String param_nomfichier_coeffOthers1 = "Inputs_Langoustine/CoeffOthers_Intercept_Langoustine/CoeffOthersHake.csv"; - @Doc(value = "do the doc of param coeffOthers2") - public String param_nomfichier_coeffOthers2 = "Inputs_Langoustine/CoeffOthers_Intercept_Langoustine/CoeffOthersBenthic.csv"; - @Doc(value = "do the doc of param gravite") - public boolean param_gravite = false; - // doit etre a vrai si gravite s'applique sinon la methode calcul uniquement les grossvalue otherspecies - - static final protected String BETA_O = "BetaOthers"; - static final protected String ALPHA_O = "AlphaOthers"; - - protected File CoeffOthers0; - protected File CoeffOthers1; - protected File CoeffOthers2; - - protected MatrixND matrixCoeffOthers; - - protected List<Metier> metiers; - // interdit de faire des set sur les strategies de la map, il faut recuperer les strategies de la date courante - protected Map<String, Strategy> mesStrategies; - - /** stocke la somme des prop initiales [str x month] */ - private MatrixND SommePropInitial = null; - /** - * stocke par strat*met, la derni�re attractivite pour chaque mois [str x - * met x month] - */ - - /** permet de stocker les CPUE nominales [str x met] */ - private MatrixND valuePerUnitOfEffort = null; - - public String[] necessaryResult = { - // put here all necessary result for this rule - // example: - // ResultName.MATRIX_BIOMASS, - // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, - ResultName.MATRIX_GROSS_VALUE_OF_LANDINGS_PER_STRATEGY_MET, - //ResultName.MATRIX_EFFORT_PER_STRATEGY_MET, - ResultName.MATRIX_EFFORT_NOMINAL_PER_STRATEGY_MET, // garder la , - - }; - - public String[] getNecessaryResult() { - return this.necessaryResult; - } - - /** - * Permet d'afficher a l'utilisateur une aide sur la regle. - * - * @return L'aide ou la description de la regle - */ - public String getDescription() throws Exception { - return _("calcule les proportion par metier chaque mois en fonction de la VPUE du metier l'annee precedante et les gross Values otherSpecies"); - /*"HYPOTHESES GRAVITE" - " attention cette regle doit toujours etre mise avant les mesures de gestion"+ - " si pour un metier Effort (metier annee-1,mois) = 0 et propinitiale (metier, mois) !=0 (ie metier potentiellement pratique), alors "+ - on remet propInitiale pour tous les metiers (premiere vue complete pour tous les metiers de la strategie - graviteVPUE1-, une alternative - pourrait etre de chercher lapremiere annee avant annee -1 pour laquelle le metier, ayant une propInitiale non nulle , aurait une VPUE (metier,mois) non nulle - et recuperer la propStr (metier,mois) pour cette annee et on l'affecte annee courante - mois, les autres metiers se partageant la proportion d'effort restante - en fonction de leur VPUE - graviteVPUE2-, une alternative pourrait etre de chercher la premiere annee avant annee -1 pour laquelle tous les metiers, - ayant une propInitiale non nulle, auraient eu une propStr non nulle, (surement difficile a trouver) - - graviteVPUE3- d'autres hypotheses pourraient etre envisagees) - "*/ - /*Calcul des gross Value Other Species en fonction de l'effort par strategie et par metier a date - Avant annee 1 (premiere annee d'appliaction de Gravite) - il faut deja faire les calculs des grossValues des autres especes - A partir de l'annee 1 : Gravite s'applique, il faut donc attendre de connaitre l'allocation de l'effort a date (dependant des gross values species et otherspecies a date - 1) - pour pouvoir calculer les grossValueOtherSpecies a date - - */ - } - - /** - * function used to initialise MatrixND to NaN double - */ - private MapFunction nanFunction = new MapFunction() { - public double apply(double value) { - return Double.NaN; - } - }; - - /** - * Appele au demarrage de la simulation, cette methode permet d'initialiser - * des valeurs - * - * @param simulation - * La simulation pour lequel on utilise cette regle - */ - public void init(SimulationContext context) throws Exception { - Date date = new Date(0); - - List<Strategy> strs = SiMatrix.getSiMatrix(context).getStrategies(date); - List<Metier> metiers = SiMatrix.getSiMatrix(context).getMetiers(date); - List<Month> months = Arrays.asList(Month.MONTH); - - SommePropInitial = MatrixFactory.getInstance().create( - "SommePropInitial", new List[] { strs, months }, - new String[] { "Strategies", "Months" }); - SommePropInitial.map(nanFunction); - - valuePerUnitOfEffort = MatrixFactory.getInstance().create( - "ValuePerUnitOfEffort", new List[] { strs, metiers }, - new String[] { "Strategies", "Metiers" }); - valuePerUnitOfEffort.map(nanFunction); - - for (Strategy str : strs) { - List<Metier> strMetiers = SiMatrix.getSiMatrix(context).getMetiers( - str, date); - List<StrategyMonthInfo> infos = str.getStrategyMonthInfo(); - for (StrategyMonthInfo info : infos) { - double somme = 0; - for (Metier strMetier : strMetiers) { - somme += info.getProportionMetier(strMetier); - } - // FIXME soit on somme pour toutes les str le meme metier; donc pas de notion de str.getName dans la cle - // soit pour une str on somme tous ces metiers (mais ce doit etre 1; donc pas de notion de metier.getName dans la cle - SommePropInitial.setValue(str, info.getMonth(), somme); - } - } - - // load coefficients of relation others file in a matrix - if (param_nomfichier_coeffOthers0 == null - || "".equals(param_nomfichier_coeffOthers0)) { - CoeffOthers0 = FileUtil.getFile(".*.csv", - "fichier 0 csv separateur ';'"); - CoeffOthers1 = FileUtil.getFile(".*.csv", - "fichier 1 csv separateur ';'"); - CoeffOthers2 = FileUtil.getFile(".*.csv", - "fichier 2 csv separateur ';'"); - } else { - CoeffOthers0 = new File(param_nomfichier_coeffOthers0); - CoeffOthers1 = new File(param_nomfichier_coeffOthers1); - CoeffOthers2 = new File(param_nomfichier_coeffOthers2); - } - - // reccuperation des metiers et strategies - SiMatrix siMatrix = SiMatrix.getSiMatrix(context); - List<String> coeffs = Arrays.asList(new String[] { ALPHA_O, BETA_O }); - - // creation de mes strategies qui ne contient pas les espagnols - //mesStrategies = new HashMap<String, Strategy>(); - //for(Strategy str : strs) { - // mesStrategies.put(str.getName(), str); - //} - - MatrixND matCoeffOthers0 = MatrixFactory.getInstance().create( - "matCoeffOthers0", new List[] { metiers, coeffs }, - new String[] { "Metiers", "Coeff" }); - MatrixND matCoeffOthers1 = MatrixFactory.getInstance().create( - "matCoeffOthers1", new List[] { metiers, coeffs }, - new String[] { "Metiers", "Coeff" }); - MatrixND matCoeffOthers2 = MatrixFactory.getInstance().create( - "matCoeffOthers2", new List[] { metiers, coeffs }, - new String[] { "Metiers", "Coeff" }); - - matCoeffOthers0.importCSV(new FileReader(CoeffOthers0), new int[] { 0, - 0 }); - matCoeffOthers1.importCSV(new FileReader(CoeffOthers1), new int[] { 0, - 0 }); - matCoeffOthers2.importCSV(new FileReader(CoeffOthers2), new int[] { 0, - 0 }); - - // captures non simulees - matrixCoeffOthers = MatrixFactory.getInstance().create( - "matrixCoeffOthers", new List[] { strs, metiers, coeffs }, - new String[] { "Strategies", "Metiers", "Coeff" }); - - MatrixND matImport = MatrixFactory.getInstance().create( - new int[] { 14, 2 }); - ; - for (Strategy str : strs) { - log.info("str =" + str.getName()); - for (Metier met : metiers) { - for (String coeff : coeffs) { - if ("NephropsLargeLesSables".equals(str.getName()) - || "NephropsLargeGuilvinec".equals(str.getName()) - || "NephropsIntermediateLesSables".equals(str - .getName()) - || "NephropsIntermediateGuilvinec".equals(str - .getName())) { - matImport = matCoeffOthers0; - } else if ("HakeLargeLesSables".equals(str.getName()) - || "HakeLargeGuilvinec".equals(str.getName()) - || "HakeIntermediateLesSables" - .equals(str.getName()) - || "HakeIntermediateGuilvinec" - .equals(str.getName())) { - matImport = matCoeffOthers1; - } else if ("BenthicLargeLesSables".equals(str.getName()) - || "BenthicLargeGuilvinec".equals(str.getName()) - || "BenthicIntermediateLesSables".equals(str - .getName()) - || "BenthicIntermediateGuilvinec".equals(str - .getName())) { - matImport = matCoeffOthers2; - } - matrixCoeffOthers.setValue(str, met, coeff, matImport - .getValue(met, coeff)); - }// fin de for coeff - }// fin de for met - }// fin de for strategy - log.info("matrixCoeffOthers : " + matrixCoeffOthers); - - } - - /** - * La condition qui doit etre vrai pour faire les actions - * - * @param simulation - * La simulation pour lequel on utilise cette regle - * @return vrai si on souhaite que les actions soit faites - */ - public boolean condition(SimulationContext context, Date date, Metier metier) - throws Exception { - - return true; // on y passe a chaque pas de temps - } - - /** - * Si la condition est vrai alors cette action est executee avant le pas de - * temps de la simulation. - * - * @param simulation - * La simulation pour lequel on utilise cette regle - */ - // Booleen permettant que ne boucler que sur un seul metier dans la preaction : - boolean first = true; - - public void preAction(SimulationContext context, Date date, Metier metier) - throws Exception { - if (log.isDebugEnabled()) { - log.debug("first = " + first + "date:" + date); - } - log.info("first = " + first + " ,on passe dans la preaction ?"); - if (first) { // on passe dans preaction pour la premiere fois - - log.info("Oui, preaction : "); - - List<Strategy> strs = SiMatrix.getSiMatrix(context).getStrategies( - date); - List<Population> populations = SiMatrix.getSiMatrix(context) - .getPopulations(date); - List<Metier> metiers = SiMatrix.getSiMatrix(context).getMetiers( - date); - ResultStorage resultmanager = context.getSimulationStorage() - .getResultStorage(); - //on commence par creer une instance de resultats de matrice GrossValuesOtherSpecies - MatrixND GrossValueOtherSpeciesPerStrMet = MatrixFactory - .getInstance() - .create( - ResultName.MATRIX_GROSS_VALUE_OF_LANDINGS_OTHER_SPECIES_PER_STRATEGY_MET, - new List[] { strs, metiers }, - new String[] { n_("Strategies"), n_("Metiers") }); - log.info("GrossValueOtherSpeciesPerStrMet initialisee " - + GrossValueOtherSpeciesPerStrMet); - - // si annee>=1 alors on fait le calcul des gravite puis on met a jour les gross value otherspecies - if ((date.getYear() > 0) & (param_gravite == true)) { - ////////Initialisation des matrices qui resultent de la simulation//////////////////////////////////////////////////////////// - log.info("calcul de Gravite"); - //Calcul de l effort nominal par strategy met - MatrixND EffortNominalPerStrMet = null; - EffortNominalPerStrMet = resultmanager.getMatrix(date - .previousYear(), - ResultName.MATRIX_EFFORT_NOMINAL_PER_STRATEGY_MET); - log.info("EffortNominalPerStrMet calculee " - + EffortNominalPerStrMet); - - //on commence par creer une matrice de valeurs (somme sur ttes les especes capturees) par strategie met - MatrixND GrossValuePerStrMet = null; - GrossValuePerStrMet = resultmanager - .getMatrix( - date.previousYear(), - ResultName.MATRIX_GROSS_VALUE_OF_LANDINGS_PER_STRATEGY_MET) - .copy(); - log.info("GrossValuePerStrMet calculee " + GrossValuePerStrMet); - - //ajouter pour tous les metiers les valeurs liees qux autres especes calculees par modele lineaire - // Boucle sur les strategies de mes strategies - //List <Strategy> mStr = strs; - for (Strategy strIndex : strs) { - // interdit de faire des set sur les strategies de la semantique de la matrice, il faut recuperer les strategies de la date courante - Strategy str = (Strategy) context.getDB().findByTopiaId( - strIndex.getTopiaId()); - - StrategyMonthInfo smi = str.getStrategyMonthInfo(date - .getMonth()); - Collection<EffortDescription> strMet = str - .getSetOfVessels().getPossibleMetiers(); - //2) calcul les valeurs non simulees du mois l annee precedante - for (EffortDescription effort : strMet) { - Metier met = effort.getPossibleMetiers(); - log.info("Boucle metier 1, metier possible: " - + met.getName()); - double eff = EffortNominalPerStrMet.getValue(str, met); - log.info("effort str" + str.getName() + met.getName() - + " : " + eff); - - //GrossValueAutres par strategie - // Hypothese 1 = pas de distinction entre les metiers n'agira donc pas sur la gravite) - // Hypothese 2 = a distinguer selon les metiers - agira sur la gravite - // l'hypothese est le resultat des coef dans la matrice en entree si tous identiques quelque soit le metier dans la strategie alors H1 - // sinon H2 - double valMetOther = matrixCoeffOthers.getValue(str, - met, ALPHA_O) - + matrixCoeffOthers.getValue(str, met, BETA_O) - * eff; - if (valMetOther < 0) { - valMetOther = 0; - } - double valMet = valMetOther - + GrossValuePerStrMet.getValue(str, met); - //log.info("valOtherMetAnchois :"+matrixCoeffOthers.getValue(str,met)*eff); - //log.info("GrossValuePerStrMet avant : "+GrossValuePerStrMet.getValue(str,met)); - GrossValuePerStrMet.setValue(str, met, valMet); - log.info("valOtherMetLangoustine : " + valMet); - log.info("GrossValuePerStrMet apres : " - + GrossValuePerStrMet.getValue(str, met)); - - } - } - - ////////////////////////////////////////////////////////////////////////////////////////////////////////// - valuePerUnitOfEffort.map(nanFunction); //reinitialisation avant calcul pour date - - for (Strategy str : strs) { - log.info("INFO: Boucle creation valuePerUnitEffort : " - + str.getName()); - //log.info("Boucle creation catchperuniteffort : "+ str.getName()); - StrategyMonthInfo smi = str.getStrategyMonthInfo(date - .getMonth()); - Collection<EffortDescription> strMet = str - .getSetOfVessels().getPossibleMetiers(); - //SiMatrix.getSiMatrix(context).getMetiers(str, date); - - // boucle pour tester s'il existe un metier pour lequel effort(metier)=0 et PropInitiale(metier)=0 (Condition) - boolean testCondition = false; - double somme = 0;//initialisation de la somme des VPUE des metiers de la strategie - for (EffortDescription ed : strMet) { - Metier strMetier = ed.getPossibleMetiers(); - log.info("Pour str=" + str.getName() + " et metier=" - + strMetier.getName()); - double effort = EffortNominalPerStrMet.getValue(str, - strMetier); - // on teste effort pour le calcul des VPUE - // si effort != 0 , valeur/effort - //sinon (effort =0) , deux cas de figure : - // 1. soit propInitiale =0 pour ce metier et dans ce cas VPUE =0 et ca ne doit pas impacter le calcul de la gravite pour les autres metiers de str - // 2. soit propInitiale! =0 et dans ce cas, on mettra PropInitiale pour tous les metiers de str - if (effort > 0) {// a peche au mois, annee-1 - //on recupere la capture tot - double value = GrossValuePerStrMet.getValue(str, - strMetier); - log.info("DEBUG: value : " + value); - log.info("DEBUG: effort : " + effort); - double vpue = value / effort; - valuePerUnitOfEffort.setValue(str, strMetier, vpue); - log.info("value/effort= " + vpue); - somme += value / effort; - } else if ((effort == 0) - & (smi.getProportionMetier(strMetier) == 0)) {// n'a jamais peche avec ce metier - valuePerUnitOfEffort.setValue(str, strMetier, 0); - log.info("n'a jamais peche avec ce metier"); - } else {// n'a pas peche au mois, annee -1, mais avait une prop d'effort non nul a l'annee=0 - testCondition = true;// ie somme est incomplete mais pas grave car on mettra PropInitiale a tous les metiers - log - .info("n'a pas peche au mois, annee -1, mais avait une prop d'effort non nul a l'annee=0"); - } - } - log.info("testCondition pour str" + str.getName() + ":" - + testCondition); - // a partir des VPUE stockees dans valuePerUnitOfEffort, on calcule la gravite - double newProp = 0; - log - .info("a partir des VPUE stockees dans valuePerUnitOfEffort, on calcule la gravite"); - if (!testCondition) { - double SommeVPUEstrat = somme; - log.info("SommeVPUEstrat=" + SommeVPUEstrat); - for (EffortDescription ed : strMet) { - Metier strMetier = ed.getPossibleMetiers(); - log.info("PropStrInitiale(metier=" - + strMetier.getName() + ")" - + smi.getProportionMetier(strMetier)); - log - .info("SommePropInitial.getValue(str, date.getMonth()=" - + SommePropInitial.getValue(str, - date.getMonth())); - log - .info("valuePerUnitOfEffort.getValue(str, strMetier)" - + valuePerUnitOfEffort.getValue( - str, strMetier)); - if (SommeVPUEstrat == 0) { - newProp = 0; - } else { - newProp = SommePropInitial.getValue(str, date - .getMonth()) - * valuePerUnitOfEffort.getValue(str, - strMetier) / SommeVPUEstrat; - } - log.info("newProp(metier=" + strMetier.getName() - + ")" + newProp); - smi.setProportionMetier(strMetier, newProp); - log.info("PropStrNouvelle(metier=" - + strMetier.getName() + ")" - + smi.getProportionMetier(strMetier)); - // annee>= 1 calcul des gross Value otherSpecies avec les nouvelles valeurs d'effort calculees par gravite - //avec la nouvelle proportion on en deduit la gross Value of Species de date pour ce str-met - double valMetOtherSpecies = matrixCoeffOthers - .getValue(str, strMetier, ALPHA_O) - + matrixCoeffOthers.getValue(str, - strMetier, BETA_O) * newProp; - //tester si valMetOtherSpecies <= alors mettre a 0 - if (valMetOtherSpecies < 0) { - valMetOtherSpecies = 0; - } - GrossValueOtherSpeciesPerStrMet.setValue(str, - strMetier, valMetOtherSpecies); - log.info("valOtherMetLangoustine : " - + valMetOtherSpecies); - log.info("GrossValuePerStrMet apres : " - + GrossValueOtherSpeciesPerStrMet.getValue( - str, strMetier)); - } - } - // else ie on met propInitiale dans PropStr(str,annee,mois) - // rien n'a faire car au debut de chaque pas de temps, PropStr est par defaut initialise a la valeur de la base de donnees (val initiales) - }//fin de boucle sur strategy - // resultats grossvalue otherspecies mis dans le resultManager - resultmanager - .addResult( - date, - ResultName.MATRIX_GROSS_VALUE_OF_LANDINGS_OTHER_SPECIES_PER_STRATEGY_MET, - GrossValueOtherSpeciesPerStrMet); - - } else if ((date.getYear() == 0) || (param_gravite == false)) { - //si annee==0 alors on ne fait que le calcul des gross value other species - for (Strategy str : strs) { - log.info("INFO: Boucle creation valuePerUnitEffort : " - + str.getName()); - //log.info("Boucle creation catchperuniteffort : "+ str.getName()); - StrategyMonthInfo smi = str.getStrategyMonthInfo(date - .getMonth()); - Collection<EffortDescription> strMet = str - .getSetOfVessels().getPossibleMetiers(); - for (EffortDescription ed : strMet) { - Metier strMetier = ed.getPossibleMetiers(); - log.info("PropStrInitiale(metier=" - + strMetier.getName() + ")" - + smi.getProportionMetier(strMetier)); - double valMetOtherSpecies = matrixCoeffOthers.getValue( - str, strMetier, ALPHA_O) - + matrixCoeffOthers.getValue(str, strMetier, - BETA_O) - * smi.getProportionMetier(strMetier); - //tester si valMetOtherSpecies <= alors mettre a 0 - if (valMetOtherSpecies < 0) { - valMetOtherSpecies = 0; - } - GrossValueOtherSpeciesPerStrMet.setValue(str, - strMetier, valMetOtherSpecies); - log.info("valOtherMetLangoustine : " - + valMetOtherSpecies); - log.info("GrossValuePerStrMet apres : " - + GrossValueOtherSpeciesPerStrMet.getValue(str, - strMetier)); - } - } - // resultats grossvalue otherspecies mis dans le resultManager - resultmanager - .addResult( - date, - ResultName.MATRIX_GROSS_VALUE_OF_LANDINGS_OTHER_SPECIES_PER_STRATEGY_MET, - GrossValueOtherSpeciesPerStrMet); - } // fin de calcul pour annee ==0 - first = false; - - }// fin de first= true - - if (log.isDebugEnabled()) { - log.debug("fin Gravite CPUEAction avant"); - } - - } - - /** - * Si la condition est vrai alors cette action est executee apres le pas de - * temps de la simulation. - * - * @param simulation - * La simulation pour lequel on utilise cette regle - */ - public void postAction(SimulationContext context, Date date, Metier metier) - throws Exception { - first = true; - - } - -}

1 0

r162 - trunk/rules
by chatellier＠users.labs.libre-entreprise.org Aug. 25, 2009

Aug. 25, 2009

Author: chatellier Date: 2009-08-25 09:59:39 +0000 (Tue, 25 Aug 2009) New Revision: 162 Modified: trunk/rules/Cantonnement.java trunk/rules/CantonnementPreSimu.java trunk/rules/ChangementParamControlablePresimu.java trunk/rules/GraviteCPUE.java Log: Mise a jour des scripts (@Doc, etc..) Modified: trunk/rules/Cantonnement.java =================================================================== --- trunk/rules/Cantonnement.java 2009-08-03 14:09:58 UTC (rev 161) +++ trunk/rules/Cantonnement.java 2009-08-25 09:59:39 UTC (rev 162) @@ -46,17 +46,17 @@ /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(Cantonnement.class); - @Doc(value="do the doc of param zone") + @Doc(value="Zone de fermeture") public Zone param_zone = null; - @Doc(value="do the doc of param gear") + @Doc(value="Engin concernés") public Gear param_gear = null; - @Doc(value="do the doc of param beginDate") + @Doc(value="Begin date") public Date param_beginDate = new Date(0); - @Doc(value="do the doc of param endDate") + @Doc(value="End date") public Date param_endDate = new Date(119); - @Doc(value="do the doc of param beginMonth") + @Doc(value="Begin month") public Month param_beginMonth = Month.JANUARY; - @Doc(value="do the doc of param endMonth") + @Doc(value="End month") public Month param_endMonth = Month.DECEMBER; public String [] necessaryResult = { @@ -76,6 +76,8 @@ * @return L'aide ou la description de la regle */ public String getDescription() throws Exception { + // fermeture saisiniere de zone qui peut être réduite à un engin + // et a certaines années de la simulation return _("Cantonnement: can be used to Cantonnement with gear if you put gear in parameter"); } @@ -90,7 +92,7 @@ /** * La condition qui doit etre vrai pour faire les actions - * @param simulation La simulation pour lequel on utilise cette regle + * @param context La simulation pour lequel on utilise cette regle * @return vrai si on souhaite que les actions soit faites */ public boolean condition(SimulationContext context, Date date, Metier metier) throws Exception { @@ -150,7 +152,7 @@ /** * Si la condition est vrai alors cette action est executée avant le pas * de temps de la simulation. - * @param simulation La simulation pour lequel on utilise cette regle + * @param context La simulation pour lequel on utilise cette regle */ public void preAction(SimulationContext context, Date date, Metier metier) throws Exception { MetierMonitor metierMon = context.getMetierMonitor(); @@ -321,7 +323,7 @@ /** * Si la condition est vrai alors cette action est executée apres le pas * de temps de la simulation. - * @param simulation La simulation pour lequel on utilise cette regle + * @param context La simulation pour lequel on utilise cette regle */ public void postAction(SimulationContext context, Date date, Metier metier) throws Exception { // nothing Modified: trunk/rules/CantonnementPreSimu.java =================================================================== --- trunk/rules/CantonnementPreSimu.java 2009-08-03 14:09:58 UTC (rev 161) +++ trunk/rules/CantonnementPreSimu.java 2009-08-25 09:59:39 UTC (rev 162) @@ -28,7 +28,7 @@ import fr.ifremer.isisfish.util.Doc; // pour pouvoir afficher une aide contextuelle (BUG#1605) /** - * Cantonnement.java + * CantonnementPreSimu.java * * Created: 30 novembre 2006 * @@ -43,15 +43,13 @@ /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(CantonnementPreSimu.class); - @Doc(value="do the doc of param zone") + @Doc(value="Zone de fermature") public Zone param_zone = null; - @Doc(value="do the doc of param gear") + @Doc(value="Engin concernés") public Gear param_gear = null; - @Doc(value="do the doc of param enginSelective") - public boolean param_enginSelective = true; - @Doc(value="do the doc of param beginMonth") + @Doc(value="Begin month") public Month param_beginMonth = Month.JANUARY; - @Doc(value="do the doc of param endMonth") + @Doc(value="End month") public Month param_endMonth = Month.DECEMBER; protected Map<Month, MatrixND> tableNonActivite = new HashMap<Month, MatrixND>(); @@ -638,7 +636,7 @@ /** * La condition qui doit etre vrai pour faire les actions - * @param simulation La simulation pour lequel on utilise cette regle + * @param context La simulation pour lequel on utilise cette regle * @return vrai si on souhaite que les actions soit faites */ public boolean condition(SimulationContext context, Date date, Metier metier) throws Exception { @@ -665,7 +663,7 @@ /** * Si la condition est vrai alors cette action est executée avant le pas * de temps de la simulation. - * @param simulation La simulation pour lequel on utilise cette regle + * @param context La simulation pour lequel on utilise cette regle */ public void preAction(SimulationContext context, Date date, Metier metier) throws Exception { // on ne doit le faire qu'une seul fois quelque soit le nombre de metier @@ -701,7 +699,7 @@ /** * Si la condition est vrai alors cette action est executée apres le pas * de temps de la simulation. - * @param simulation La simulation pour lequel on utilise cette regle + * @param context La simulation pour lequel on utilise cette regle */ public void postAction(SimulationContext context, Date date, Metier metier) throws Exception { affectNonActivite = false; Modified: trunk/rules/ChangementParamControlablePresimu.java =================================================================== --- trunk/rules/ChangementParamControlablePresimu.java 2009-08-03 14:09:58 UTC (rev 161) +++ trunk/rules/ChangementParamControlablePresimu.java 2009-08-25 09:59:39 UTC (rev 162) @@ -2,32 +2,35 @@ import static org.codelutin.i18n.I18n._; +import java.util.ArrayList; +import java.util.List; + import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; -import scripts.ResultName; import scripts.SiMatrix; - -import java.io.Writer; -import java.util.ArrayList; -import java.util.List; - -import org.codelutin.math.matrix.*; - import fr.ifremer.isisfish.IsisFishDAOHelper; +import fr.ifremer.isisfish.datastore.RegionStorage; +import fr.ifremer.isisfish.entities.EffortDescription; +import fr.ifremer.isisfish.entities.EffortDescriptionDAO; +import fr.ifremer.isisfish.entities.FisheryRegion; +import fr.ifremer.isisfish.entities.Gear; +import fr.ifremer.isisfish.entities.Metier; +import fr.ifremer.isisfish.entities.MetierDAO; +import fr.ifremer.isisfish.entities.MetierSeasonInfo; +import fr.ifremer.isisfish.entities.MetierSeasonInfoDAO; +import fr.ifremer.isisfish.entities.SetOfVessels; +import fr.ifremer.isisfish.entities.Strategy; +import fr.ifremer.isisfish.entities.StrategyMonthInfo; +import fr.ifremer.isisfish.entities.Zone; +import fr.ifremer.isisfish.rule.AbstractRule; import fr.ifremer.isisfish.simulator.SimulationContext; import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.types.Month; -import fr.ifremer.isisfish.entities.*; -import fr.ifremer.isisfish.rule.AbstractRule; -import fr.ifremer.isisfish.datastore.RegionStorage; -import fr.ifremer.isisfish.datastore.SimulationStorage; -import fr.ifremer.isisfish.datastore.ResultStorage; +import fr.ifremer.isisfish.util.Doc; -import fr.ifremer.isisfish.util.Doc; // pour pouvoir afficher une aide contextuelle (BUG#1605) - /** - * TailleMin.java + * ChangementParamControlablePresimu.java * * Created: 30 novembre 2006 * @@ -42,15 +45,15 @@ /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(ChangementParamControlablePresimu.class); - @Doc(value="do the doc of param zone") + @Doc(value="Zone de fermeture") public Zone param_zone = null; - @Doc(value="do the doc of param gear") + @Doc(value="Engin concernés") public Gear param_gear = null; - @Doc(value="do the doc of param beginMonth") + @Doc(value="Begin month") public Month param_beginMonth = Month.JANUARY; - @Doc(value="do the doc of param endMonth") + @Doc(value="End month") public Month param_endMonth = Month.DECEMBER; - @Doc(value="do the doc of param newParamValue") + @Doc(value="New param controlable value") public String param_newParamValue = "80"; public String [] necessaryResult = { @@ -75,7 +78,7 @@ /** * Appelé au démarrage de la simulation, cette méthode permet d'initialiser * des valeurs - * @param simulation La simulation pour lequel on utilise cette regle + * @param context La simulation pour lequel on utilise cette regle */ public void init(SimulationContext context) throws Exception { SiMatrix siMatrix = SiMatrix.getSiMatrix(context); @@ -295,8 +298,8 @@ } /** - * La condition qui doit etre vrai pour faire les actions - * @param simulation La simulation pour lequel on utilise cette regle + * La condition qui doit etre vrai pour faire les actions. + * @param context La simulation pour lequel on utilise cette regle * @return vrai si on souhaite que les actions soit faites */ public boolean condition(SimulationContext context, Date date, Metier metier) throws Exception { @@ -304,18 +307,18 @@ } /** - * Si la condition est vrai alors cette action est executée avant le pas + * Si la condition est vrai alors cette action est executée avant le pas. * de temps de la simulation. - * @param simulation La simulation pour lequel on utilise cette regle + * @param context La simulation pour lequel on utilise cette regle */ public void preAction(SimulationContext context, Date date, Metier metier) throws Exception { // nothing } /** - * Si la condition est vrai alors cette action est executée apres le pas + * Si la condition est vrai alors cette action est executée apres le pas. * de temps de la simulation. - * @param simulation La simulation pour lequel on utilise cette regle + * @param context La simulation pour lequel on utilise cette regle */ public void postAction(SimulationContext context, Date date, Metier metier) throws Exception { // nothing Modified: trunk/rules/GraviteCPUE.java =================================================================== --- trunk/rules/GraviteCPUE.java 2009-08-03 14:09:58 UTC (rev 161) +++ trunk/rules/GraviteCPUE.java 2009-08-25 09:59:39 UTC (rev 162) @@ -5,7 +5,6 @@ import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; -import scripts.GravityModel; import scripts.ResultName; import scripts.SiMatrix; @@ -44,10 +43,10 @@ private MatrixND HistoriqueCPUE = null; /** va permettre de stocker a chaque pas de temps la somme des attractivite [str] */ - MatrixND SommeCPUEstrat = null; + private MatrixND SommeCPUEstrat = null; /** va permettre de stocker a chaque pas de temps la somme des proportions * pour les metiers n'ayant pas d'attractivite [str] */ - MatrixND SommeProp = null; + private MatrixND SommeProp = null; /** permet de stocker les CPUE standardiser [str x met] */ private MatrixND catchPerUnitOfEffort = null; @@ -70,8 +69,7 @@ * @return L'aide ou la description de la regle */ public String getDescription() throws Exception { - // TODO - return _("GraviteCPUE"); + return _("Allocation de l'effort de pêche par statégie selon un coefficient d'attractivite de l'année précedente au meme mois"); } /** @@ -85,8 +83,8 @@ /** * Appelé au démarrage de la simulation, cette méthode permet d'initialiser - * des valeurs - * @param simulation La simulation pour lequel on utilise cette regle + * des valeurs. + * @param context La simulation pour lequel on utilise cette regle */ public void init(SimulationContext context) throws Exception { Date date = new Date(0); @@ -154,7 +152,7 @@ } /** * La condition qui doit etre vrai pour faire les actions - * @param simulation La simulation pour lequel on utilise cette regle + * @param context La simulation pour lequel on utilise cette regle * @return vrai si on souhaite que les actions soit faites */ public boolean condition(SimulationContext context, Date date, Metier metier) throws Exception { @@ -166,7 +164,7 @@ /** * Si la condition est vrai alors cette action est executée avant le pas * de temps de la simulation. - * @param simulation La simulation pour lequel on utilise cette regle + * @param context La simulation pour lequel on utilise cette regle */ public void preAction(SimulationContext context, Date date, Metier metier) throws Exception { if (log.isDebugEnabled()) { @@ -473,7 +471,7 @@ /** * Si la condition est vrai alors cette action est executée apres le pas * de temps de la simulation. - * @param simulation La simulation pour lequel on utilise cette regle + * @param context La simulation pour lequel on utilise cette regle */ public void postAction(SimulationContext context, Date date, Metier metier) throws Exception { SommeCPUEstrat.map(nanFunction);

1 0

r161 - trunk/analyseplans
by jcouteau＠users.labs.libre-entreprise.org Aug. 3, 2009

Aug. 3, 2009

Author: jcouteau Date: 2009-08-03 14:09:58 +0000 (Mon, 03 Aug 2009) New Revision: 161 Modified: trunk/analyseplans/Calibration.java trunk/analyseplans/Max.java Log: Remove warnings Modified: trunk/analyseplans/Calibration.java =================================================================== --- trunk/analyseplans/Calibration.java 2009-07-20 13:38:52 UTC (rev 160) +++ trunk/analyseplans/Calibration.java 2009-08-03 14:09:58 UTC (rev 161) @@ -29,7 +29,7 @@ import fr.ifremer.isisfish.util.Doc; /** - * Calibration_bidon.java + * Calibration.java * * Created: 8 mars 2007 * @@ -43,7 +43,7 @@ /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(Calibration.class); - enum State { + protected enum State { STATE_INIT, STATE_0, STATE_1, STATE_2, STATE_3, STATE_4 }; @@ -77,6 +77,7 @@ public String[] necessaryResult = { ResultName.MATRIX_LANDING_PER_MET }; + @Override public String[] getNecessaryResult() { return this.necessaryResult; } @@ -86,6 +87,7 @@ * * @return L'aide ou la description du plan */ + @Override public String getDescription() throws Exception { return _("Simplexe"); } @@ -97,6 +99,7 @@ * @param simulation * La simulation pour lequel on utilise cette regle */ + @Override public void init(AnalysePlanContext context) throws Exception { if (param_nomfichier_debarquements == null || "".equals(param_nomfichier_debarquements)) { @@ -132,6 +135,7 @@ * @return true if we must do next simulation, false to stop plan * @throws Exception */ + @Override public boolean beforeSimulation(AnalysePlanContext context, SimulationStorage nextSimulation) throws Exception { boolean doNext = true; @@ -239,6 +243,7 @@ * @return true if we must do next simulation, false to stop plan * @throws Exception */ + @Override public boolean afterSimulation(AnalysePlanContext context, SimulationStorage lastSimulation) throws Exception { boolean doNext = true; @@ -354,6 +359,7 @@ * Permit to order experience, first is experience with smallest * criteria */ + @Override public int compareTo(Object arg0) { Experience other = (Experience) arg0; int result = Double.compare(this.criteria, other.criteria); Modified: trunk/analyseplans/Max.java =================================================================== --- trunk/analyseplans/Max.java 2009-07-20 13:38:52 UTC (rev 160) +++ trunk/analyseplans/Max.java 2009-08-03 14:09:58 UTC (rev 161) @@ -35,6 +35,7 @@ // ResultName.MATRIX_NET_VALUE_OF_LANDINGS_PER_STRATEGY_MET, }; + @Override public String[] getNecessaryResult() { return this.necessaryResult; } @@ -44,6 +45,7 @@ * * @return L'aide ou la description du plan */ + @Override public String getDescription() throws Exception { return _("Permit to specify maximum simulation numbers"); } @@ -54,6 +56,7 @@ * * @param context La simulation pour lequel on utilise cette regle */ + @Override public void init(AnalysePlanContext context) throws Exception { } @@ -68,6 +71,7 @@ * @return true if we must do next simulation, false to stop plan * @throws Exception */ + @Override public boolean beforeSimulation(AnalysePlanContext context, SimulationStorage nextSimulation) throws Exception { boolean result = context.getNumber() < param_max; @@ -83,6 +87,7 @@ * @return true if we must do next simulation, false to stop plan * @throws Exception */ + @Override public boolean afterSimulation(AnalysePlanContext context, SimulationStorage lastSimulation) throws Exception { return true;

1 0

r160 - in trunk: exports sensitivity
by chatellier＠users.labs.libre-entreprise.org July 20, 2009

July 20, 2009

Author: chatellier Date: 2009-07-20 13:38:52 +0000 (Mon, 20 Jul 2009) New Revision: 160 Modified: trunk/exports/Abundances.java trunk/exports/Biomasses.java trunk/exports/CapturesNombre.java trunk/exports/CapturesPoids.java trunk/exports/CellsDefinition.java trunk/exports/EffortsMetier.java trunk/exports/GrossValueOfLandingsOtherSpecies.java trunk/exports/MetierZone.java trunk/exports/NonActivite.java trunk/exports/OwnerMargin.java trunk/exports/RegionDefinition.java trunk/exports/RejetsNombre.java trunk/exports/RejetsPoids.java trunk/exports/SensitivityBiomassReferenceY9.java trunk/exports/SensitivityBiomassRelativeReferenceY12.java trunk/exports/SensitivityBiomassRelativeY6.java trunk/exports/SensitivityBiomassY3.java trunk/exports/SensitivityCapturesWeightReferenceY7.java trunk/exports/SensitivityCapturesWeightRelativeReferenceY10.java trunk/exports/SensitivityCapturesWeightRelativeY4.java trunk/exports/SensitivityCapturesWeightY1.java trunk/exports/SensitivityGenitorBiomassReferenceY8.java trunk/exports/SensitivityGenitorBiomassRelativeReferenceY11.java trunk/exports/SensitivityGenitorBiomassRelativeY5.java trunk/exports/SensitivityGenitorBiomassY2.java trunk/exports/VesselMargin.java trunk/exports/ZonesDefinition.java trunk/sensitivity/SensitivityCalculatorJavaExpandGrid.java trunk/sensitivity/SensitivityCalculatorRFast.java trunk/sensitivity/SensitivityCalculatorRFrF2.java trunk/sensitivity/SensitivityCalculatorRMorris.java trunk/sensitivity/SensitivityCalculatorROptimumLHS.java trunk/sensitivity/SensitivityCalculatorRRandomLHS.java trunk/sensitivity/SensitivityCalculatorRSobol.java Log: @Doc annotation is now field target only. Modified: trunk/exports/Abundances.java =================================================================== --- trunk/exports/Abundances.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/Abundances.java 2009-07-20 13:38:52 UTC (rev 160) @@ -14,10 +14,7 @@ import fr.ifremer.isisfish.export.Export; import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.datastore.SimulationStorage; -import fr.ifremer.isisfish.datastore.ResultStorage; -import fr.ifremer.isisfish.util.Doc; // pour pouvoir afficher une aide contextuelle (BUG#1605) - /** * Abundance.java * @@ -29,7 +26,6 @@ * Last update: $Date: 2007-05-24 09:30:07 $ * by : $Author: bpoussin $ */ -@Doc(value="do the doc of class Abundances") public class Abundances implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/Biomasses.java =================================================================== --- trunk/exports/Biomasses.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/Biomasses.java 2009-07-20 13:38:52 UTC (rev 160) @@ -15,10 +15,7 @@ import fr.ifremer.isisfish.export.Export; import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.datastore.SimulationStorage; -import fr.ifremer.isisfish.datastore.ResultStorage; -import fr.ifremer.isisfish.util.Doc; // pour pouvoir afficher une aide contextuelle (BUG#1605) - /** * Biomasses.java * @@ -30,7 +27,6 @@ * Last update: $Date: 2007-05-24 09:30:07 $ * by : $Author: bpoussin $ */ - @Doc(value="do the doc of class Biomasses") public class Biomasses implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/CapturesNombre.java =================================================================== --- trunk/exports/CapturesNombre.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/CapturesNombre.java 2009-07-20 13:38:52 UTC (rev 160) @@ -17,7 +17,6 @@ import fr.ifremer.isisfish.entities.Zone; import fr.ifremer.isisfish.export.Export; import fr.ifremer.isisfish.types.Date; -import fr.ifremer.isisfish.util.Doc; /** * CapturesNombre.java @@ -29,7 +28,6 @@ * * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ */ -@Doc(value = "do the doc of class CaptureNombre") public class CapturesNombre implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/CapturesPoids.java =================================================================== --- trunk/exports/CapturesPoids.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/CapturesPoids.java 2009-07-20 13:38:52 UTC (rev 160) @@ -17,7 +17,6 @@ import fr.ifremer.isisfish.entities.Zone; import fr.ifremer.isisfish.export.Export; import fr.ifremer.isisfish.types.Date; -import fr.ifremer.isisfish.util.Doc; /** * CapturesPoids.java @@ -29,7 +28,6 @@ * * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ */ -@Doc(value = "do the doc of class CapturesPoids") public class CapturesPoids implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/CellsDefinition.java =================================================================== --- trunk/exports/CellsDefinition.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/CellsDefinition.java 2009-07-20 13:38:52 UTC (rev 160) @@ -12,7 +12,6 @@ import fr.ifremer.isisfish.datastore.SimulationStorage; import fr.ifremer.isisfish.entities.Cell; import fr.ifremer.isisfish.export.Export; -import fr.ifremer.isisfish.util.Doc; /** * CellsDefinition.java @@ -25,7 +24,6 @@ * Last update: $Date: 2007-05-24 09:30:07 $ * by : $Author: bpoussin $ */ -@Doc(value="do the doc of class CellsDefinition") public class CellsDefinition implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/EffortsMetier.java =================================================================== --- trunk/exports/EffortsMetier.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/EffortsMetier.java 2009-07-20 13:38:52 UTC (rev 160) @@ -15,10 +15,7 @@ import fr.ifremer.isisfish.export.Export; import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.datastore.SimulationStorage; -import fr.ifremer.isisfish.datastore.ResultStorage; -import fr.ifremer.isisfish.util.Doc; // pour pouvoir afficher une aide contextuelle (BUG#1605) - /** * EffortsMetier.java * @@ -30,7 +27,6 @@ * Last update: $Date: 2007-05-24 09:30:07 $ * by : $Author: bpoussin $ */ - @Doc(value="do the doc of class EffortsMetier") public class EffortsMetier implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/GrossValueOfLandingsOtherSpecies.java =================================================================== --- trunk/exports/GrossValueOfLandingsOtherSpecies.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/GrossValueOfLandingsOtherSpecies.java 2009-07-20 13:38:52 UTC (rev 160) @@ -16,8 +16,6 @@ import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.datastore.SimulationStorage; -import fr.ifremer.isisfish.util.Doc; // pour pouvoir afficher une aide contextuelle (BUG#1605) - /** * GrossValueOfLandingsOtherSpecies.java * @@ -29,7 +27,6 @@ * Last update: $Date: 2007-05-24 09:30:07 $ * by : $Author: bpoussin $ */ -@Doc(value="do the doc of class VesselMargin") public class GrossValueOfLandingsOtherSpecies implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/MetierZone.java =================================================================== --- trunk/exports/MetierZone.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/MetierZone.java 2009-07-20 13:38:52 UTC (rev 160) @@ -16,8 +16,6 @@ import fr.ifremer.isisfish.datastore.SimulationStorage; import fr.ifremer.isisfish.datastore.ResultStorage; -import fr.ifremer.isisfish.util.Doc; // pour pouvoir afficher une aide contextuelle (BUG#1605) - /** * MetierZone.java * @@ -29,7 +27,6 @@ * Last update: $Date: 2007-05-24 09:30:07 $ * by : $Author: bpoussin $ */ - @Doc(value="do the doc of class MetierZone") public class MetierZone implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/NonActivite.java =================================================================== --- trunk/exports/NonActivite.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/NonActivite.java 2009-07-20 13:38:52 UTC (rev 160) @@ -17,8 +17,6 @@ import fr.ifremer.isisfish.datastore.SimulationStorage; import fr.ifremer.isisfish.datastore.ResultStorage; -import fr.ifremer.isisfish.util.Doc; // pour pouvoir afficher une aide contextuelle (BUG#1605) - /** * NonActivite.java * @@ -30,7 +28,6 @@ * Last update: $Date: 2007-05-24 09:30:07 $ * by : $Author: bpoussin $ */ - @Doc(value="do the doc of class NonActivite") public class NonActivite implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/OwnerMargin.java =================================================================== --- trunk/exports/OwnerMargin.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/OwnerMargin.java 2009-07-20 13:38:52 UTC (rev 160) @@ -17,8 +17,6 @@ import fr.ifremer.isisfish.datastore.SimulationStorage; import fr.ifremer.isisfish.datastore.ResultStorage; -import fr.ifremer.isisfish.util.Doc; // pour pouvoir afficher une aide contextuelle (BUG#1605) - /** * OwnerMargin.java * @@ -30,7 +28,6 @@ * Last update: $Date: 2007-05-24 09:30:07 $ * by : $Author: bpoussin $ */ - @Doc(value="do the doc of class OwnerMargin") public class OwnerMargin implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/RegionDefinition.java =================================================================== --- trunk/exports/RegionDefinition.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/RegionDefinition.java 2009-07-20 13:38:52 UTC (rev 160) @@ -12,8 +12,6 @@ import fr.ifremer.isisfish.export.Export; import fr.ifremer.isisfish.datastore.SimulationStorage; -import fr.ifremer.isisfish.util.Doc; // pour pouvoir afficher une aide contextuelle (BUG#1605) - /** * RegionDefinition.java * @@ -25,7 +23,6 @@ * Last update: $Date: 2007-05-24 10:05:22 $ * by : $Author: bpoussin $ */ -@Doc(value="do the doc of class RegionDefinition") public class RegionDefinition implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/RejetsNombre.java =================================================================== --- trunk/exports/RejetsNombre.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/RejetsNombre.java 2009-07-20 13:38:52 UTC (rev 160) @@ -17,7 +17,6 @@ import fr.ifremer.isisfish.entities.Zone; import fr.ifremer.isisfish.export.Export; import fr.ifremer.isisfish.types.Date; -import fr.ifremer.isisfish.util.Doc; /** * RejetsNombre.java @@ -29,7 +28,6 @@ * * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ */ -@Doc(value = "do the doc of class RejetsNombre") public class RejetsNombre implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/RejetsPoids.java =================================================================== --- trunk/exports/RejetsPoids.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/RejetsPoids.java 2009-07-20 13:38:52 UTC (rev 160) @@ -17,7 +17,6 @@ import fr.ifremer.isisfish.entities.Zone; import fr.ifremer.isisfish.export.Export; import fr.ifremer.isisfish.types.Date; -import fr.ifremer.isisfish.util.Doc; /** * RejetsPoids.java @@ -29,7 +28,6 @@ * * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ */ -@Doc(value = "do the doc of class RejetsPoids") public class RejetsPoids implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/SensitivityBiomassReferenceY9.java =================================================================== --- trunk/exports/SensitivityBiomassReferenceY9.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/SensitivityBiomassReferenceY9.java 2009-07-20 13:38:52 UTC (rev 160) @@ -17,7 +17,6 @@ import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.util.Doc; -@Doc("Doc for SensitivityBiomass") public class SensitivityBiomassReferenceY9 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/SensitivityBiomassRelativeReferenceY12.java =================================================================== --- trunk/exports/SensitivityBiomassRelativeReferenceY12.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/SensitivityBiomassRelativeReferenceY12.java 2009-07-20 13:38:52 UTC (rev 160) @@ -17,7 +17,6 @@ import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.util.Doc; -@Doc("Doc for SensitivityBiomass") public class SensitivityBiomassRelativeReferenceY12 implements SensitivityExport { Modified: trunk/exports/SensitivityBiomassRelativeY6.java =================================================================== --- trunk/exports/SensitivityBiomassRelativeY6.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/SensitivityBiomassRelativeY6.java 2009-07-20 13:38:52 UTC (rev 160) @@ -16,7 +16,6 @@ import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.util.Doc; -@Doc("Doc for SensitivityBiomass") public class SensitivityBiomassRelativeY6 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/SensitivityBiomassY3.java =================================================================== --- trunk/exports/SensitivityBiomassY3.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/SensitivityBiomassY3.java 2009-07-20 13:38:52 UTC (rev 160) @@ -16,7 +16,6 @@ import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.util.Doc; -@Doc("Doc for SensitivityBiomass") public class SensitivityBiomassY3 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/SensitivityCapturesWeightReferenceY7.java =================================================================== --- trunk/exports/SensitivityCapturesWeightReferenceY7.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/SensitivityCapturesWeightReferenceY7.java 2009-07-20 13:38:52 UTC (rev 160) @@ -17,7 +17,6 @@ import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.util.Doc; -@Doc("Doc for SensitivityCapturesPoids") public class SensitivityCapturesWeightReferenceY7 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/SensitivityCapturesWeightRelativeReferenceY10.java =================================================================== --- trunk/exports/SensitivityCapturesWeightRelativeReferenceY10.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/SensitivityCapturesWeightRelativeReferenceY10.java 2009-07-20 13:38:52 UTC (rev 160) @@ -17,7 +17,6 @@ import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.util.Doc; -@Doc("Doc for SensitivityCapturesPoids") public class SensitivityCapturesWeightRelativeReferenceY10 implements SensitivityExport { Modified: trunk/exports/SensitivityCapturesWeightRelativeY4.java =================================================================== --- trunk/exports/SensitivityCapturesWeightRelativeY4.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/SensitivityCapturesWeightRelativeY4.java 2009-07-20 13:38:52 UTC (rev 160) @@ -16,7 +16,6 @@ import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.util.Doc; -@Doc("Doc for SensitivityCapturesPoids") public class SensitivityCapturesWeightRelativeY4 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/SensitivityCapturesWeightY1.java =================================================================== --- trunk/exports/SensitivityCapturesWeightY1.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/SensitivityCapturesWeightY1.java 2009-07-20 13:38:52 UTC (rev 160) @@ -16,7 +16,6 @@ import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.util.Doc; -@Doc("Doc for SensitivityCapturesPoids") public class SensitivityCapturesWeightY1 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/SensitivityGenitorBiomassReferenceY8.java =================================================================== --- trunk/exports/SensitivityGenitorBiomassReferenceY8.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/SensitivityGenitorBiomassReferenceY8.java 2009-07-20 13:38:52 UTC (rev 160) @@ -19,7 +19,6 @@ import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.util.Doc; -@Doc("Doc for SensitivityBiomass") public class SensitivityGenitorBiomassReferenceY8 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/SensitivityGenitorBiomassRelativeReferenceY11.java =================================================================== --- trunk/exports/SensitivityGenitorBiomassRelativeReferenceY11.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/SensitivityGenitorBiomassRelativeReferenceY11.java 2009-07-20 13:38:52 UTC (rev 160) @@ -19,7 +19,6 @@ import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.util.Doc; -@Doc("Doc for SensitivityBiomass") public class SensitivityGenitorBiomassRelativeReferenceY11 implements SensitivityExport { Modified: trunk/exports/SensitivityGenitorBiomassRelativeY5.java =================================================================== --- trunk/exports/SensitivityGenitorBiomassRelativeY5.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/SensitivityGenitorBiomassRelativeY5.java 2009-07-20 13:38:52 UTC (rev 160) @@ -18,7 +18,6 @@ import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.util.Doc; -@Doc("Doc for SensitivityBiomass") public class SensitivityGenitorBiomassRelativeY5 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/SensitivityGenitorBiomassY2.java =================================================================== --- trunk/exports/SensitivityGenitorBiomassY2.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/SensitivityGenitorBiomassY2.java 2009-07-20 13:38:52 UTC (rev 160) @@ -18,7 +18,6 @@ import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.util.Doc; -@Doc("Doc for SensitivityBiomass") public class SensitivityGenitorBiomassY2 implements SensitivityExport { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/VesselMargin.java =================================================================== --- trunk/exports/VesselMargin.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/VesselMargin.java 2009-07-20 13:38:52 UTC (rev 160) @@ -17,8 +17,6 @@ import fr.ifremer.isisfish.datastore.SimulationStorage; import fr.ifremer.isisfish.datastore.ResultStorage; -import fr.ifremer.isisfish.util.Doc; // pour pouvoir afficher une aide contextuelle (BUG#1605) - /** * VesselMargin.java * @@ -30,7 +28,6 @@ * Last update: $Date: 2007-05-24 09:30:07 $ * by : $Author: bpoussin $ */ - @Doc(value="do the doc of class VesselMargin") public class VesselMargin implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/exports/ZonesDefinition.java =================================================================== --- trunk/exports/ZonesDefinition.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/exports/ZonesDefinition.java 2009-07-20 13:38:52 UTC (rev 160) @@ -14,8 +14,6 @@ import fr.ifremer.isisfish.types.Date; import fr.ifremer.isisfish.datastore.SimulationStorage; -import fr.ifremer.isisfish.util.Doc; // pour pouvoir afficher une aide contextuelle (BUG#1605) - /** * ZonesDefinition.java * @@ -27,7 +25,6 @@ * Last update: $Date: 2007-05-24 09:30:07 $ * by : $Author: bpoussin $ */ -@Doc(value="do the doc of class ZoneDefinition") public class ZonesDefinition implements Export { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/sensitivity/SensitivityCalculatorJavaExpandGrid.java =================================================================== --- trunk/sensitivity/SensitivityCalculatorJavaExpandGrid.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/sensitivity/SensitivityCalculatorJavaExpandGrid.java 2009-07-20 13:38:52 UTC (rev 160) @@ -39,7 +39,6 @@ import fr.ifremer.isisfish.simulator.sensitivity.domain.DiscreteDomain; import fr.ifremer.isisfish.simulator.sensitivity.domain.EquationContinuousDomain; import fr.ifremer.isisfish.simulator.sensitivity.domain.MatrixContinuousDomain; -import fr.ifremer.isisfish.util.Doc; /** * Implementation of ExpandGrid method using Java @@ -48,7 +47,6 @@ * @version $Revision: 1.0 $ * */ -@Doc("ExpandGrid") public class SensitivityCalculatorJavaExpandGrid extends AbstractSensitivityCalculator { Modified: trunk/sensitivity/SensitivityCalculatorRFast.java =================================================================== --- trunk/sensitivity/SensitivityCalculatorRFast.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/sensitivity/SensitivityCalculatorRFast.java 2009-07-20 13:38:52 UTC (rev 160) @@ -61,7 +61,6 @@ * Last update : $Date: 2009-03-25 13:45:16 +0100 (mer., 25 mars 2009) $ By : * $Author: jcouteau $ */ - public class SensitivityCalculatorRFast extends AbstractSensitivityCalculator { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/sensitivity/SensitivityCalculatorRFrF2.java =================================================================== --- trunk/sensitivity/SensitivityCalculatorRFrF2.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/sensitivity/SensitivityCalculatorRFrF2.java 2009-07-20 13:38:52 UTC (rev 160) @@ -52,7 +52,6 @@ * Last update : $Date: 2009-04-03 13:13:35 +0200 (ven., 03 avr. 2009) $ By : * $Author: chatellier $ */ -@Doc("FrF2 method, at least 4 factors need to be declared") public class SensitivityCalculatorRFrF2 extends AbstractSensitivityCalculator { /** to use log facility, just put in your code: log.info("..."); */ Modified: trunk/sensitivity/SensitivityCalculatorRMorris.java =================================================================== --- trunk/sensitivity/SensitivityCalculatorRMorris.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/sensitivity/SensitivityCalculatorRMorris.java 2009-07-20 13:38:52 UTC (rev 160) @@ -59,8 +59,6 @@ * Last update : $Date$ By : * $Author$ */ - -@Doc("Morris method") public class SensitivityCalculatorRMorris extends AbstractSensitivityCalculator { @Doc("Integer giving the number of repetitions of the design, i.e. the number of elementary effect computed per factor. (Default value : 4)") Modified: trunk/sensitivity/SensitivityCalculatorROptimumLHS.java =================================================================== --- trunk/sensitivity/SensitivityCalculatorROptimumLHS.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/sensitivity/SensitivityCalculatorROptimumLHS.java 2009-07-20 13:38:52 UTC (rev 160) @@ -55,9 +55,7 @@ * * @author jcouteau * @version $Revision: 1.0 $ - * */ -@Doc("Optimum Latin Hypercube") public class SensitivityCalculatorROptimumLHS extends AbstractSensitivityCalculator { Modified: trunk/sensitivity/SensitivityCalculatorRRandomLHS.java =================================================================== --- trunk/sensitivity/SensitivityCalculatorRRandomLHS.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/sensitivity/SensitivityCalculatorRRandomLHS.java 2009-07-20 13:38:52 UTC (rev 160) @@ -55,9 +55,7 @@ * * @author jcouteau * @version $Revision: 1.0 $ - * */ -@Doc("Random Latin Hypercube") public class SensitivityCalculatorRRandomLHS extends AbstractSensitivityCalculator { Modified: trunk/sensitivity/SensitivityCalculatorRSobol.java =================================================================== --- trunk/sensitivity/SensitivityCalculatorRSobol.java 2009-07-20 12:26:03 UTC (rev 159) +++ trunk/sensitivity/SensitivityCalculatorRSobol.java 2009-07-20 13:38:52 UTC (rev 160) @@ -60,7 +60,6 @@ * Last update : $Date: 2009-03-25 13:45:16 +0100 (mer., 25 mars 2009) $ By : * $Author: jcouteau $ */ - public class SensitivityCalculatorRSobol extends AbstractSensitivityCalculator { /** to use log facility, just put in your code: log.info("..."); */

1 0

r159 - trunk
by chatellier＠users.labs.libre-entreprise.org July 20, 2009

July 20, 2009

Author: chatellier Date: 2009-07-20 12:26:03 +0000 (Mon, 20 Jul 2009) New Revision: 159 Modified: trunk/pom.xml Log: Use new isis version Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2009-07-16 16:24:01 UTC (rev 158) +++ trunk/pom.xml 2009-07-20 12:26:03 UTC (rev 159) @@ -50,7 +50,7 @@ <dependency> <groupId>ifremer</groupId> <artifactId>isis-fish</artifactId> - <version>3.2.0.5-rc1-SNAPSHOT</version> + <version>3.2.0.5-rc2-SNAPSHOT</version> <scope>compile</scope> </dependency> </dependencies>

1 0

r158 - trunk
by chatellier＠users.labs.libre-entreprise.org July 16, 2009

July 16, 2009

Author: chatellier Date: 2009-07-16 16:24:01 +0000 (Thu, 16 Jul 2009) New Revision: 158 Modified: trunk/pom.xml Log: Depend on never version Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2009-07-16 09:35:40 UTC (rev 157) +++ trunk/pom.xml 2009-07-16 16:24:01 UTC (rev 158) @@ -50,7 +50,7 @@ <dependency> <groupId>ifremer</groupId> <artifactId>isis-fish</artifactId> - <version>3.2.0.5-SNAPSHOT</version> + <version>3.2.0.5-rc1-SNAPSHOT</version> <scope>compile</scope> </dependency> </dependencies>

1 0