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r185 - trunk
by tchemit＠users.nuiton.org Jan. 28, 2010

Jan. 28, 2010

Author: tchemit Date: 2010-01-28 10:33:04 +0100 (Thu, 28 Jan 2010) New Revision: 185 Modified: trunk/pom.xml Log: [maven-release-plugin] prepare release nuiton-j2r-1.0.1 Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2010-01-28 09:31:32 UTC (rev 184) +++ trunk/pom.xml 2010-01-28 09:33:04 UTC (rev 185) @@ -14,7 +14,7 @@ </parent> <artifactId>nuiton-j2r</artifactId> - <version>1.0.1-SNAPSHOT</version> + <version>1.0.1</version> <dependencies> @@ -106,9 +106,9 @@  <scm> - <connection>scm:svn:http://svn.nuiton.org/svn/nuiton-j2r/trunk</connection> - <developerConnection>scm:svn:http://svn.nuiton.org/svn/nuiton-j2r/trunk</developerConnection> - <url>http://www.nuiton.org/repositories/browse/nuiton-j2r/trunk</url> + <connection>scm:svn:http://svn.nuiton.org/svn/nuiton-j2r/tags/nuiton-j2r-1.0.1</connection> + <developerConnection>scm:svn:http://svn.nuiton.org/svn/nuiton-j2r/tags/nuiton-j2r-1.0.1</developerConnection> + <url>http://www.nuiton.org/repositories/browse/nuiton-j2r/tags/nuiton-j2r-1.0.1</url> </scm> <profiles>

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r184 - trunk
by tchemit＠users.nuiton.org Jan. 28, 2010

Jan. 28, 2010

Author: tchemit Date: 2010-01-28 10:31:32 +0100 (Thu, 28 Jan 2010) New Revision: 184 Modified: trunk/pom.xml Log: remove defaultGoal from default build (it hurts when using defaultGoal in profiles) Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2010-01-26 21:07:32 UTC (rev 183) +++ trunk/pom.xml 2010-01-28 09:31:32 UTC (rev 184) @@ -86,7 +86,6 @@ </properties> <build> - <defaultGoal>install</defaultGoal> <pluginManagement> <plugins>

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r183 - trunk
by tchemit＠users.nuiton.org Jan. 26, 2010

Jan. 26, 2010

Author: tchemit Date: 2010-01-26 22:07:32 +0100 (Tue, 26 Jan 2010) New Revision: 183 Modified: trunk/pom.xml Log: Utilisation de mavenpom4redmine 2.0.4 Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2010-01-26 09:27:32 UTC (rev 182) +++ trunk/pom.xml 2010-01-26 21:07:32 UTC (rev 183) @@ -10,7 +10,7 @@ <parent> <groupId>org.nuiton</groupId> <artifactId>mavenpom4redmine</artifactId> - <version>2.0.3</version> + <version>2.0.4</version> </parent> <artifactId>nuiton-j2r</artifactId>

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r182 - in trunk/src: main/java/org/nuiton/j2r test/java/org/nuiton/j2r
by jcouteau＠users.nuiton.org Jan. 26, 2010

Jan. 26, 2010

Author: jcouteau Date: 2010-01-26 10:27:32 +0100 (Tue, 26 Jan 2010) New Revision: 182 Modified: trunk/src/main/java/org/nuiton/j2r/RProxy.java trunk/src/test/java/org/nuiton/j2r/JNITest.java Log: Add better management of Windows filesystem Modified: trunk/src/main/java/org/nuiton/j2r/RProxy.java =================================================================== --- trunk/src/main/java/org/nuiton/j2r/RProxy.java 2010-01-24 23:36:28 UTC (rev 181) +++ trunk/src/main/java/org/nuiton/j2r/RProxy.java 2010-01-26 09:27:32 UTC (rev 182) @@ -267,7 +267,7 @@ "occured during the initialization."); return; } - engine.voidEval("setwd(\"" + directory.getAbsolutePath() + "\")"); + engine.setwd(directory); } /** Modified: trunk/src/test/java/org/nuiton/j2r/JNITest.java =================================================================== --- trunk/src/test/java/org/nuiton/j2r/JNITest.java 2010-01-24 23:36:28 UTC (rev 181) +++ trunk/src/test/java/org/nuiton/j2r/JNITest.java 2010-01-26 09:27:32 UTC (rev 182) @@ -199,11 +199,24 @@ }*/ @Test public void testWorkingDirectory() throws Exception { + + //test linux paths File workingDirectory = new File("/tmp"); engine.setwd(workingDirectory); File testWorkingDirectory = engine.getwd(); Assert.assertEquals(workingDirectory.getAbsolutePath(), testWorkingDirectory.getAbsolutePath()); + + //test windows paths + File tempFile = File.createTempFile("test","", new File(System.getProperty("java.io.tmpdir"))); + tempFile.delete(); + tempFile.mkdirs(); + workingDirectory = new File(System.getProperty("java.io.tmpdir") + + "\\" + tempFile.getName()); + engine.setwd(workingDirectory); + testWorkingDirectory = engine.getwd(); + Assert.assertEquals(tempFile.getAbsolutePath(), + testWorkingDirectory.getAbsolutePath()); } @Test @@ -214,7 +227,7 @@ engine.remove("a"); engine.loadRData(workingdir); Double testDouble = (Double) engine.eval("a"); - Double compareTo = new Double(5.0); + Double compareTo = 5.0; Assert.assertEquals(compareTo, testDouble); } @@ -230,7 +243,7 @@ engine.remove("a"); engine.dget("a", "testDputDgetfile"); Double testDouble = (Double) engine.eval("a"); - Double compareTo = new Double(5.0); + Double compareTo = 5.0; Assert.assertEquals(compareTo, testDouble); //test method using absolute path @@ -241,7 +254,7 @@ engine.remove("a"); engine.dget("a", testingFile); Double testDouble2 = (Double) engine.eval("a"); - Double compareTo2 = new Double(6.0); + Double compareTo2 = 6.0; Assert.assertEquals(compareTo2, testDouble2); File testWorkingDirectory = engine.getwd(); Assert.assertEquals(workingdir.getAbsolutePath(), @@ -251,7 +264,7 @@ @Test public void testRemove() throws Exception { engine.voidEval("a<-6.0"); - Assert.assertEquals(new Double(6.0), engine.eval("a")); + Assert.assertEquals(6.0, engine.eval("a")); try { engine.remove("a"); engine.eval("a"); @@ -269,7 +282,7 @@ engine.voidEval("a<-5.0"); engine.remove("b"); engine.mv("a", "b"); - Assert.assertEquals(new Double(5.0), engine.eval("b")); + Assert.assertEquals(5.0, engine.eval("b")); Assert.assertFalse((Boolean) engine.eval("exists(\"a\")")); } @@ -300,11 +313,11 @@ engine.voidEval("e<-5.0"); engine.voidEval("f<-5.0"); engine.commit(); - Assert.assertEquals(new Double(10.0), engine.eval("a")); - Assert.assertEquals(new Double(5.0), engine.eval("b")); - Assert.assertEquals(new Double(5.0), engine.eval("d")); - Assert.assertEquals(new Double(5.0), engine.eval("e")); - Assert.assertEquals(new Double(5.0), engine.eval("f")); + Assert.assertEquals(10.0, engine.eval("a")); + Assert.assertEquals(5.0, engine.eval("b")); + Assert.assertEquals(5.0, engine.eval("d")); + Assert.assertEquals(5.0, engine.eval("e")); + Assert.assertEquals(5.0, engine.eval("f")); } @Test

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r181 - trunk
by tchemit＠users.nuiton.org Jan. 24, 2010

Jan. 24, 2010

Author: tchemit Date: 2010-01-25 00:36:28 +0100 (Mon, 25 Jan 2010) New Revision: 181 Modified: trunk/pom.xml Log: Utilisation de mavenpom4redmine 2.0.3 Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2010-01-19 17:34:19 UTC (rev 180) +++ trunk/pom.xml 2010-01-24 23:36:28 UTC (rev 181) @@ -10,7 +10,7 @@ <parent> <groupId>org.nuiton</groupId> <artifactId>mavenpom4redmine</artifactId> - <version>2.0.2</version> + <version>2.0.3</version> </parent> <artifactId>nuiton-j2r</artifactId>

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r180 - trunk
by tchemit＠users.nuiton.org Jan. 19, 2010

Jan. 19, 2010

Author: tchemit Date: 2010-01-19 18:34:19 +0100 (Tue, 19 Jan 2010) New Revision: 180 Modified: trunk/pom.xml Log: Utilisation de mavenpom4redmine 2.0.2 Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2010-01-17 20:15:03 UTC (rev 179) +++ trunk/pom.xml 2010-01-19 17:34:19 UTC (rev 180) @@ -10,7 +10,7 @@ <parent> <groupId>org.nuiton</groupId> <artifactId>mavenpom4redmine</artifactId> - <version>2.0.1</version> + <version>2.0.2</version> </parent> <artifactId>nuiton-j2r</artifactId>

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r179 - trunk
by tchemit＠users.nuiton.org Jan. 17, 2010

Jan. 17, 2010

Author: tchemit Date: 2010-01-17 21:15:03 +0100 (Sun, 17 Jan 2010) New Revision: 179 Modified: trunk/pom.xml Log: Utilisation de mavenpom4redmine 2.0.1 Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2010-01-12 08:57:00 UTC (rev 178) +++ trunk/pom.xml 2010-01-17 20:15:03 UTC (rev 179) @@ -1,5 +1,5 @@ -<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" - xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd"> +<?xml version="1.0"?> +<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd"> <modelVersion>4.0.0</modelVersion> @@ -10,7 +10,7 @@ <parent> <groupId>org.nuiton</groupId> <artifactId>mavenpom4redmine</artifactId> - <version>2.0-SNAPSHOT</version> + <version>2.0.1</version> </parent> <artifactId>nuiton-j2r</artifactId> @@ -152,4 +152,4 @@ </profile> </profiles> -</project> \ No newline at end of file +</project>

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r178 - in trunk/src/main: java/org/nuiton/j2r/types resources
by jcouteau＠users.nuiton.org Jan. 12, 2010

Jan. 12, 2010

Author: jcouteau Date: 2010-01-12 09:57:00 +0100 (Tue, 12 Jan 2010) New Revision: 178 Modified: trunk/src/main/java/org/nuiton/j2r/types/RDataFrame.java trunk/src/main/resources/log4j.properties Log: Fix DataFrame getData bug Modified: trunk/src/main/java/org/nuiton/j2r/types/RDataFrame.java =================================================================== --- trunk/src/main/java/org/nuiton/j2r/types/RDataFrame.java 2010-01-10 23:37:57 UTC (rev 177) +++ trunk/src/main/java/org/nuiton/j2r/types/RDataFrame.java 2010-01-12 08:57:00 UTC (rev 178) @@ -42,12 +42,11 @@ public class RDataFrame extends REXPAbstract implements REXP { private Log log = LogFactory.getLog(RDataFrame.class); - - //TODO implement the logger use ! + //Vector containing the names of the rows of the data.frame vectors private List<String> rowNames; //Vector containing the vectors of the data.frame - private List<List<? extends Object>> data; + private List<List<?>> data; /** * Constructor @@ -58,7 +57,7 @@ super(); this.names = new ArrayList<String>(); this.rowNames = new ArrayList<String>(); - this.data = new ArrayList<List<? extends Object>>(); + this.data = new ArrayList<List<?>>(); this.variable = ""; this.engine = engine; this.attributes = new HashMap<String, Object>(); @@ -116,7 +115,7 @@ * initialize */ public RDataFrame(REngine engine, List<String> names, - List<String> rowNames, List<List<? extends Object>> data, + List<String> rowNames, List<List<?>> data, String variable) throws RException { super(); this.names = names; @@ -456,7 +455,7 @@ public Object get(int x, int y) throws RException { checkX(x); checkY(y); - if (engine.isAutoCommit()) { + if ((engine.isAutoCommit())&&(this.variable!=null)&&(!this.variable.isEmpty())) { Object returnObject = engine.eval(String.format( RInstructions.GET_DATAFRAME_ITEM, this.variable, y + 1, x + 1)); Modified: trunk/src/main/resources/log4j.properties =================================================================== --- trunk/src/main/resources/log4j.properties 2010-01-10 23:37:57 UTC (rev 177) +++ trunk/src/main/resources/log4j.properties 2010-01-12 08:57:00 UTC (rev 178) @@ -5,4 +5,4 @@ log4j.appender.stdout.layout=org.apache.log4j.PatternLayout log4j.appender.stdout.layout.ConversionPattern=%5p [%t] (%F:%L) %M - %m%n # package level -log4j.logger.org.codelutin.j2r=INFO +log4j.logger.org.nuiton.j2r=INFO

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r177 - trunk
by tchemit＠users.nuiton.org Jan. 10, 2010

Jan. 10, 2010

Author: tchemit Date: 2010-01-11 00:37:57 +0100 (Mon, 11 Jan 2010) New Revision: 177 Modified: trunk/pom.xml Log: use mavenpom4redmine Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2010-01-07 03:30:49 UTC (rev 176) +++ trunk/pom.xml 2010-01-10 23:37:57 UTC (rev 177) @@ -9,8 +9,8 @@ <parent> <groupId>org.nuiton</groupId> - <artifactId>mavenpom</artifactId> - <version>1.1.4</version> + <artifactId>mavenpom4redmine</artifactId> + <version>2.0-SNAPSHOT</version> </parent> <artifactId>nuiton-j2r</artifactId>

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r176 - trunk
by tchemit＠users.nuiton.org Jan. 7, 2010

Jan. 7, 2010

Author: tchemit Date: 2010-01-07 04:30:49 +0100 (Thu, 07 Jan 2010) New Revision: 176 Modified: trunk/pom.xml Log: use mavenpom 1.1.4 Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2009-12-18 13:40:37 UTC (rev 175) +++ trunk/pom.xml 2010-01-07 03:30:49 UTC (rev 176) @@ -10,7 +10,7 @@ <parent> <groupId>org.nuiton</groupId> <artifactId>mavenpom</artifactId> - <version>1.1.3</version> + <version>1.1.4</version> </parent> <artifactId>nuiton-j2r</artifactId>

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