- Nuiton-j2r-devel - mailman.cloud.codelutin.com

[ANN] - Nuiton Java-2-R 1.2 released
by Eric Chatellier March 17, 2017

March 17, 2017

The Nuiton Java-2-R team is pleased to announce the nuiton-j2r-1.2 release! Librairie permettant d'utiliser R en Java, que ce soit par le Network ou en JNI. Documentation of the project can be found here: http://nuiton-j2r.nuiton.org <http://nuiton-j2r.nuiton.org/> Changes ------- Changes in this version include: Fixed Bugs: o Fix x86 arch detection Issue: 4124. Thanks to Éric Chatellier. Resolved by echatellier. Changes: o Migrates to git Issue: 3548. o Update libs Issue: 4159. Thanks to Éric Chatellier. Resolved by echatellier. o Use java 7 API level Issue: 4161. Thanks to Éric Chatellier. Resolved by echatellier. Downloads --------- For a manual installation, you can download files here: https://forge.nuiton.org/projects/nuiton-j2r/files * nuiton-j2r-1.2-deps.zip -https://forge.nuiton.org/attachments/download/1323 * nuiton-j2r-1.2-full.zip -https://forge.nuiton.org/attachments/download/1324 Maven artifacts --------------- Artifacts are deployed in Maven Central Repository http://repo1.maven.org/maven2 Find us at *http://search.maven.org/#artifactdetails|org.nuiton|nuiton-j2r|1.2|jar <http://search.maven.org/#artifactdetails%7Corg.nuiton%7Cnuiton-j2r%7C1.2%7C…> Have fun! -Nuiton Java-2-R team -- Éric Chatellier - www.codelutin.com - 02.40.50.29.28

1 0

Librairies native R
by Eric Chatellier Aug. 28, 2014

Aug. 28, 2014

Salut, Actuellement, les libs native jri sont committées dans le projet, mais elles sont spécifiques à chaque version de majeures de R. Pour R 3.0.x il faut les dll/so pour R 3.0 Il faudrait faire de multiples release à chaque version ce qui n'est pas top. On pourrait aussi supprimer le check de version dans ce fichier https://github.com/s-u/rJava/blob/master/jri/src/Rinit.c#L199 sachant que le test est faux, et que pour R 2.10 à 2.13, cela n'a pas posé de problème. Sauf que pour builder le dll ... voilà quoi :) L'autre possibilité demanderait une action utilisateur et lui demanderait d'installer le package R 'rJava' (aka le support java dans R), il serait fournir par R. Le point génant est la ligne de commande ensuite pour réussir à trouver le fichier jri.dll ou libjri.so: java -Djava.library.path=$R_HOME/library/rJava/jri Qu'en pensez-vous ? -- Éric Chatellier - www.codelutin.com - 02.40.50.29.28

2 6

Problème de licence
by Eric Chatellier Feb. 9, 2012

Feb. 9, 2012

Bonjour, En ces temps de réflexions constructives sur les licences, il se trouve qu'en vérifiant la licence de nuiton-j2r, celle ci s'avère potentiellement incorrecte. En effet, nuiton-j2r est en LGPL: http://maven-site.nuiton.org/nuiton-j2r/license.html Mais la dépendance jri (rJava) est GPL: http://cran.r-project.org/web/packages/rJava/index.html R est également GPL: http://www.r-project.org/Licenses/ nuiton-j2r ne devrait-il pas être en GPL ? -- Éric Chatellier <chatellier(a)codelutin.com> Tel: 02.40.50.29.28 http://www.codelutin.com

4 7

[ANN] - Nuiton Java-2-R library 1.0.2 released
by nuiton.org Release Notification Nov. 29, 2010

Nov. 29, 2010

The Nuiton Java-2-R library team is pleased to announce the nuiton-j2r-1.0.2 release! Librairie permettant d'utiliser R en Java, que ce soit par le Network ou en JNI. Documentation of the project can be found here: http://maven-site.nuiton.org/nuiton-j2r Changes ------- Changes in this version include: New features: o Upgrader la version de Rserve et JRI Issue: 24. Thanks to Jean Couteau. Resolved by jcouteau. o Use rJava 0.8-2 Issue: 111. Thanks to Éric Chatellier. Resolved by jcouteau. o Use RServe 0.6-1 Issue: 139. Thanks to Éric Chatellier. Resolved by jcouteau. o Use mavenpom4redmine 2.1 Issue: 517. Thanks to Tony Chemit. Resolved by tchemit. o Use maven-license-plugin 2.1 Issue: 518. Thanks to Tony Chemit. Resolved by tchemit. o Use junit 4.8.1 Issue: 519. Thanks to Tony Chemit. Resolved by tchemit. o Update JRI to version 0.8-4 (rJava 0.8-4) Issue: 690. Thanks to Jean Couteau. Resolved by tchemit. Fixed Bugs: o Clean code Issue: 542. Thanks to Jean Couteau. Resolved by jcouteau. o Improve attributes management on REXPs Issue: 544. Thanks to Jean Couteau. Resolved by jcouteau. o Add toString methods Issue: 543. Thanks to Jean Couteau. Resolved by jcouteau. o NPE when getting a list with anonymous elements Issue: 608. Thanks to Jean Couteau. Resolved by jcouteau. o Impossible to submit a multiline R script Issue: 686. Thanks to Jean Couteau. Resolved by jcouteau. o Si pas de jri, l'application se ferme Issue: 941. Thanks to Jean Couteau. Resolved by echatellier. Downloads --------- For a manual installation, you can download files here: http://www.nuiton.org/projects/list_files/nuiton-j2r * nuiton-j2r-1.0.2-deps.zip - http://www.nuiton.org/attachments/download/293 * nuiton-j2r-1.0.2-full.zip - http://www.nuiton.org/attachments/download/294 Maven artifacts --------------- Artifacts are deployed in nuiton maven repository http://repo1.maven.org/maven2/ * http://repo1.maven.org/maven2/org/nuiton/nuiton-j2r/1.0.2/nuiton-j2r-1.0.2.… * http://repo1.maven.org/maven2/org/nuiton/nuiton-j2r/1.0.2/nuiton-j2r-1.0.2.… * http://repo1.maven.org/maven2/org/nuiton/nuiton-j2r/1.0.2/nuiton-j2r-1.0.2-… * http://repo1.maven.org/maven2/org/nuiton/nuiton-j2r/1.0.2/nuiton-j2r-1.0.2-… * http://repo1.maven.org/maven2/org/nuiton/nuiton-j2r/1.0.2/nuiton-j2r-1.0.2-… * http://repo1.maven.org/maven2/org/nuiton/nuiton-j2r/1.0.2/nuiton-j2r-1.0.2.… * http://repo1.maven.org/maven2/org/nuiton/nuiton-j2r/1.0.2/nuiton-j2r-1.0.2-… * http://repo1.maven.org/maven2/org/nuiton/nuiton-j2r/1.0.2/nuiton-j2r-1.0.2-… * http://repo1.maven.org/maven2/org/nuiton/nuiton-j2r/1.0.2/nuiton-j2r-1.0.2-… Have fun! -Nuiton Java-2-R library team

1 0

NPE
by Nicolas Dumoulin May 17, 2010

May 17, 2010

Hi, I'm encounterring another NPE if I try this call: rengine.eval("sa <- fast99( factors = 3, n = 1000, q = c('qunif','qunif','qunif'), q.arg = list(list(-1,1),list(-1,1),list(-1,1)))"); The R call passes in R, buf fails in j2r with output: 12 mai 2010 16:30:26 org.nuiton.j2r.RProxy initOnNet INFO: Trying to initialize the R Proxy with Network 12 mai 2010 16:30:26 org.nuiton.j2r.net.RNetEngine init INFO: Trying to connect to the Rserve on '127.0.0.1:6311' 12 mai 2010 16:30:26 org.nuiton.j2r.net.RNetEngine convertResult GRAVE: Unknown return type on : org.rosuda.REngine.REXPSymbol[fast99] 12 mai 2010 16:30:26 org.nuiton.j2r.net.RNetEngine convertResult GRAVE: Unknown return type on : org.rosuda.REngine.REXPSymbol[list] 12 mai 2010 16:30:26 org.nuiton.j2r.net.RNetEngine convertResult GRAVE: Unknown return type on : org.rosuda.REngine.REXPSymbol[list] 12 mai 2010 16:30:26 org.nuiton.j2r.net.RNetEngine convertResult GRAVE: Unknown return type on : org.rosuda.REngine.REXPSymbol[-] Exception in thread "main" java.lang.NullPointerException at org.nuiton.j2r.net.RNetEngine.convertResult(RNetEngine.java:302) at org.nuiton.j2r.net.RNetEngine.convertResult(RNetEngine.java:293) at org.nuiton.j2r.net.RNetEngine.convertResult(RNetEngine.java:293) at org.nuiton.j2r.net.RNetEngine.convertResult(RNetEngine.java:293) at org.nuiton.j2r.net.RNetEngine.convertResult(RNetEngine.java:293) at org.nuiton.j2r.net.RNetEngine.eval(RNetEngine.java:169) at org.nuiton.j2r.RProxy.eval(RProxy.java:154) at org.simexplorer.test.sensitivity.Fast99.main(Fast99.java:33) In the sample, the vector and lists for the domains are superfluous because identical for each factor, but I need this format for other cases. Do you have ideas? -- Nicolas Dumoulin Ingénieur d'études - Cemagref, LISC +33 (0)4.73.44.07.29

2 4

NPE with j2r
by Nicolas Dumoulin May 12, 2010

May 12, 2010

Hi, I'm trying to use j2r with the sensitivity R package http://cran.r-project.org/web/packages/sensitivity/index.html I've installed R 2.10.1, sensitivity 1.4.0 and Rserve 0.6-1. Following commands are OK in the R shell: library('sensitivity') fast99(model = NULL,factors=3,n=1000,q='qunif',q.arg=list(min=-1,max=1)) but if I try the same with j2r, I've got: Exception in thread "main" java.lang.NullPointerException at org.nuiton.j2r.net.RNetEngine.convertResult(RNetEngine.java:302) at org.nuiton.j2r.net.RNetEngine.convertResult(RNetEngine.java:293) at org.nuiton.j2r.net.RNetEngine.convertResult(RNetEngine.java:293) at org.nuiton.j2r.net.RNetEngine.convertResult(RNetEngine.java:293) at org.nuiton.j2r.net.RNetEngine.eval(RNetEngine.java:169) at org.nuiton.j2r.RProxy.eval(RProxy.java:154) My java code is: Engine rengine = new RProxy(); rengine.eval("library('sensitivity')"); rengine.eval("fast99(model = NULL,factors=3,n=1000,q='qunif',q.arg=list(min=-1,max=1))"); If someone have an idea… -- Nicolas Dumoulin Ingénieur d'études - Cemagref, LISC +33 (0)4.73.44.07.29

2 11

[ANN] - Nuiton Java-2-R library 1.0.1 released
by nuiton.org Release Notification Jan. 28, 2010

Jan. 28, 2010

1 0

New releases for isis-fish project
by Eric Chatellier Jan. 25, 2010

Jan. 25, 2010

Hi, Isis-fish project will be released soon (release candidate). So following project will be released this week: - nuiton-widgets (1.0.1) - nuiton-utils (1.1.4) - only if #201 is fixed [1] - nuiton-j2r (1.0.1) Regards. [1] http://www.nuiton.org/issues/show/201 -- Éric <chatellier(a)codelutin.com> Tel: 02 40 50 29 28 http://www.codelutin.com

1 0

Re: [Nuiton-j2r-devel] [Rd] Bug in R evaluating a huge instruction (PR#14096)
by Jean Couteau Dec. 3, 2009

Dec. 3, 2009

Thank you very much for your input Duncan and Romain. I will try to do what you are advising. The R instruction is generated from java using jri (and an abstraction layer we built upon it : nuiton-j2r), i will try add this limitation to nuiton-j2r so that it split the instruction if it is too long. Best regards, Jean Duncan Murdoch wrote: > On 01/12/2009 12:50 AM, Jean Couteau wrote: >> Thanks for your time Duncan, >> >> I join here the instruction that is not correct, hoping that might >> help you. The file is encoded in utf-8 so you should not have any >> problem reading it. >> >> I doubt to that it is an R bug too, but with all my tests i am less >> and less sure of that. > > I have no problem sourcing that file, but I do get an error if I try > to cut and paste it, because it's a single line of 4890 characters, > and that's too long. So this is an R limitation, but it's one with an > easy workaround: just add some line breaks into your source. > > Duncan Murdoch > > >> >> Best regards, >> Jean Couteau >>> Your message has encoding problems, so it's not readable. Could you >>> put the code online somewhere where we could download it in its >>> original form? I doubt if this is an R bug, but I can't point out >>> the problem in your code (or confirm that it really is an R bug) >>> without an undamaged copy of the code. >>> >>> Duncan Murdoch >>> >>> >>> >> > >

3 3

Migration du projet / Project migration
by root＠nuiton.com Aug. 4, 2009

Aug. 4, 2009

Bonjour à tous, Dans l'optique de dissocier au maximum les projets libres initiés par la société Code Lutin de celle-ci et permettre une meilleur implication de la communauté du libre dans ces derniers, nous vous annonçons que le site de développement du projet n'est plus hébergé sur le labs libre-entreprise mais sur la plateforme www.nuiton.org. La plupart de la migration a été réalisée, nous vous invitons à utiliser d'ors et déjà la plateforme http://www.nuiton.org (le projet sur le labs libre-entreprise n'est plus accessible publiquement) Les listes de diffusions ont été migrées et tous les utilisateurs ont normalement du être réabonnés aux nouvelles listes. La nouvelle adresse de cette liste: nuiton-j2r-devel(a)list.nuiton.org Nous sommes désolés des désagréments causés et vous remercions de votre soutien. Cordialement, L'équipe de développement. ---------------------------- Dear all, In order to separate the libre projects that Code Lutin has initiated and the company itself, and also to encourage the implication of the libre community, we recently moved the project's development site from the libre-entreprise labs to the www.nuiton.org platform. Most of the migration is complete, we invite you to use, from now on, the platform http://www.nuiton.org (the project on libre-entreprise labs is now longer publicly available). The mailing-lists have been migrated and everybody should have been automatically subscribing the new lists. New mail address for this list: nuiton-j2r-devel(a)list.nuiton.org We are sorry for the inconvenience, and thank you for your support. Best regards, The development team.

1 0