May 2009 - Isis-fish-commits - mailman.cloud.codelutin.com

r2186 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator
by chatellier＠users.labs.libre-entreprise.org May 6, 2009

May 6, 2009

Author: chatellier Date: 2009-05-06 09:10:04 +0000 (Wed, 06 May 2009) New Revision: 2186 Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java Log: Fix concurrentModificationException Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java 2009-05-06 08:17:33 UTC (rev 2185) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java 2009-05-06 09:10:04 UTC (rev 2186) @@ -32,11 +32,13 @@ import java.util.ArrayList; import java.util.Collection; import java.util.HashMap; +import java.util.Iterator; import java.util.List; import java.util.Map; import java.util.Properties; import java.util.SortedMap; import java.util.TreeMap; +import java.util.Map.Entry; import javax.swing.JComponent; @@ -392,11 +394,19 @@ public void removeRules(String name) { if (name != null) { - for (Map.Entry<Rule, String> entry : rules.entrySet()) { + /*for (Map.Entry<Rule, String> entry : rules.entrySet()) { if (entry.getValue().equals(name)) { param.removeRule(entry.getKey()); rules.remove(entry.getKey()); } + }*/ + Iterator<Entry<Rule, String>> itEntries = rules.entrySet().iterator(); + while (itEntries.hasNext()) { + Entry<Rule, String> currentEntry = itEntries.next(); + if (currentEntry.getValue().equals(name)) { + param.removeRule(currentEntry.getKey()); + itEntries.remove(); + } } } }

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r2185 - in isis-fish/trunk: . src/main/java/fr/ifremer/isisfish/util
by chatellier＠users.labs.libre-entreprise.org May 6, 2009

May 6, 2009

Author: chatellier Date: 2009-05-06 08:17:33 +0000 (Wed, 06 May 2009) New Revision: 2185 Modified: isis-fish/trunk/pom.xml isis-fish/trunk/src/main/java/fr/ifremer/isisfish/util/CompileHelper.java Log: Utilise le compilateur du classpath (au lieu de celui du systeme) Modified: isis-fish/trunk/pom.xml =================================================================== --- isis-fish/trunk/pom.xml 2009-05-05 17:42:21 UTC (rev 2184) +++ isis-fish/trunk/pom.xml 2009-05-06 08:17:33 UTC (rev 2185) @@ -308,6 +308,12 @@ <artifactId>freemarker</artifactId> <version>2.3.15</version> </dependency> + + <dependency> + <groupId>com.sun</groupId> + <artifactId>tools</artifactId> + <version>1.6.0</version> + </dependency> </dependencies>  Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/util/CompileHelper.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/util/CompileHelper.java 2009-05-05 17:42:21 UTC (rev 2184) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/util/CompileHelper.java 2009-05-06 08:17:33 UTC (rev 2185) @@ -35,13 +35,14 @@ import javax.tools.JavaCompiler; import javax.tools.JavaFileObject; import javax.tools.StandardJavaFileManager; -import javax.tools.ToolProvider; import org.apache.commons.lang.StringUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import org.codelutin.util.FileUtil; +import com.sun.tools.javac.api.JavacTool; + import fr.ifremer.isisfish.IsisFish; import fr.ifremer.isisfish.datastore.JavaSourceStorage; @@ -199,9 +200,9 @@ int result = -1000; try { - //JavaCompiler compiler = JavacTool.create(); + JavaCompiler compiler = JavacTool.create(); // Use system compiler - JavaCompiler compiler = ToolProvider.getSystemJavaCompiler(); + // JavaCompiler compiler = ToolProvider.getSystemJavaCompiler(); StandardJavaFileManager fileManager = compiler .getStandardFileManager(null, null, null); Iterable<? extends JavaFileObject> compilationUnits = fileManager

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r2184 - isis-fish/trunk/src/main/resources
by chatellier＠users.labs.libre-entreprise.org May 5, 2009

May 5, 2009

Author: chatellier Date: 2009-05-05 17:42:21 +0000 (Tue, 05 May 2009) New Revision: 2184 Added: isis-fish/trunk/src/main/resources/log4j.properties Log: Restore log4j.properties Added: isis-fish/trunk/src/main/resources/log4j.properties =================================================================== --- isis-fish/trunk/src/main/resources/log4j.properties (rev 0) +++ isis-fish/trunk/src/main/resources/log4j.properties 2009-05-05 17:42:21 UTC (rev 2184) @@ -0,0 +1,17 @@ +# Global logging configuration +log4j.rootLogger=ERROR, stdout +# Console output... +log4j.appender.stdout=org.apache.log4j.ConsoleAppender +log4j.appender.stdout.layout=org.apache.log4j.PatternLayout +log4j.appender.stdout.layout.ConversionPattern=%5p [%t] (%F:%L) %M - %m%n + +# package level +log4j.logger.fr.ifremer.isisfish=INFO +log4j.logger.org.codelutin=INFO +log4j.logger.analyseplans=INFO +log4j.logger.exports=INFO +log4j.logger.formules=INFO +log4j.logger.rules=INFO +log4j.logger.scripts=INFO +log4j.logger.sensitivity=INFO +log4j.logger.simulators=INFO

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r2183 - isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator
by chatellier＠users.labs.libre-entreprise.org May 5, 2009

May 5, 2009

Author: chatellier Date: 2009-05-05 17:37:30 +0000 (Tue, 05 May 2009) New Revision: 2183 Modified: isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/SimulationPreScriptTest.java Log: Fix test, but test was correct. Name must be fixed in UI. Modified: isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/SimulationPreScriptTest.java =================================================================== --- isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/SimulationPreScriptTest.java 2009-05-05 17:28:14 UTC (rev 2182) +++ isis-fish/trunk/src/test/java/fr/ifremer/isisfish/simulator/SimulationPreScriptTest.java 2009-05-05 17:37:30 UTC (rev 2183) @@ -19,7 +19,6 @@ package fr.ifremer.isisfish.simulator; import java.io.IOException; -import java.io.Serializable; import java.io.StringWriter; import java.io.Writer; import java.util.ArrayList; @@ -320,6 +319,11 @@ out.flush(); String scriptContent = out.toString(); log.info("Script = " + scriptContent); - Assert.assertTrue(scriptContent.indexOf("\"PopulationEquation.K1\", 0.68, \"-\"") != -1); + //Assert.assertTrue(scriptContent.indexOf("\"PopulationEquation.K1\", 0.68, \"-\"") != -1); + + // FIXME important + // le nom doit être positionné par l'UI, pas ici !!! + Assert.assertTrue(scriptContent.indexOf("\"test equation.PopulationEquation.K1\", 0.68, \"-\"") != -1); + } }

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r2182 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher
by chatellier＠users.labs.libre-entreprise.org May 5, 2009

May 5, 2009

Author: chatellier Date: 2009-05-05 17:28:14 +0000 (Tue, 05 May 2009) New Revision: 2182 Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java Log: Missplaced null check Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java 2009-05-05 17:16:05 UTC (rev 2181) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationMonitor.java 2009-05-05 17:28:14 UTC (rev 2182) @@ -669,10 +669,10 @@ if (simulationStorageForAnalyze.size() == numberOfSimulation) { SimulationParameter params = simulation.getParameter(); SensitivityCalculator sensitivityCalculator = params.getSensitivityCalculator(); - if (log.isDebugEnabled()) { - log.debug("Call analyzeResult on sensitivity script " + sensitivityCalculator.getClass().getSimpleName()); - } if (sensitivityCalculator != null) { + if (log.isDebugEnabled()) { + log.debug("Call analyzeResult on sensitivity script " + sensitivityCalculator.getClass().getSimpleName()); + } try { // build master sensitivity export directory File masterExportDirectory = new File(IsisFish.config.getDefaultExportDirectory(), simulationCommonPrefix);

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r2181 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity
by chatellier＠users.labs.libre-entreprise.org May 5, 2009

May 5, 2009

Author: chatellier Date: 2009-05-05 17:16:05 +0000 (Tue, 05 May 2009) New Revision: 2181 Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/EditorHelper.java Log: Fix import Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/EditorHelper.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/EditorHelper.java 2009-05-05 15:49:55 UTC (rev 2180) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/sensitivity/EditorHelper.java 2009-05-05 17:16:05 UTC (rev 2181) @@ -52,17 +52,12 @@ import org.codelutin.math.matrix.MatrixND; import org.codelutin.math.matrix.gui.MatrixEditor; import org.codelutin.math.matrix.gui.JAXXMatrixEditor; -import org.codelutin.math.matrix.gui.JAXXMatrixEditor; import org.codelutin.topia.persistence.TopiaEntity; import fr.ifremer.isisfish.ui.input.RangeOfValuesUI; import fr.ifremer.isisfish.ui.input.SelectivityEditorUI; import java.util.ArrayList; import java.util.Collection; import java.util.List; -import java.util.regex.Matcher; -import java.util.regex.Pattern; -import javax.swing.JPanel; -import org.codelutin.math.matrix.gui.MatrixEditor; /** *

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r2180 - isis-fish/trunk/src/main/resources/templates/prescript
by chatellier＠users.labs.libre-entreprise.org May 5, 2009

May 5, 2009

Author: chatellier Date: 2009-05-05 15:49:55 +0000 (Tue, 05 May 2009) New Revision: 2180 Modified: isis-fish/trunk/src/main/resources/templates/prescript/factorprescript.ftl Log: Non complet des variables d'equation Modified: isis-fish/trunk/src/main/resources/templates/prescript/factorprescript.ftl =================================================================== --- isis-fish/trunk/src/main/resources/templates/prescript/factorprescript.ftl 2009-05-05 14:50:19 UTC (rev 2179) +++ isis-fish/trunk/src/main/resources/templates/prescript/factorprescript.ftl 2009-05-05 15:49:55 UTC (rev 2180) @@ -40,7 +40,7 @@ // Factor : ${factor.name} <#-- Following is java instanceof equivalent --> <#if factor.domain.class.simpleName.equals("EquationContinuousDomain")> - context.setValue("${factor.domain.variableName}", ${factor.value}, "${factor.domain.operator}"); + context.setValue("${factor.name}.${factor.domain.variableName}", ${factor.value}, "${factor.domain.operator}"); <#else> <#if factor.domain.class.simpleName.equals("MatrixContinuousDomain")> <#assign value=factor.domain.matrix />

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r2179 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/entities
by chatellier＠users.labs.libre-entreprise.org May 5, 2009

May 5, 2009

Author: chatellier Date: 2009-05-05 14:50:19 +0000 (Tue, 05 May 2009) New Revision: 2179 Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/entities/package-info.java Log: Correction de la javadoc. Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/entities/package-info.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/entities/package-info.java 2009-05-05 13:42:06 UTC (rev 2178) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/entities/package-info.java 2009-05-05 14:50:19 UTC (rev 2179) @@ -1,5 +1,5 @@ /** - * Database storage migration. + * Entité metier d'IsisFish. */ package fr.ifremer.isisfish.entities;

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r2178 - isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator
by chatellier＠users.labs.libre-entreprise.org May 5, 2009

May 5, 2009

Author: chatellier Date: 2009-05-05 13:42:06 +0000 (Tue, 05 May 2009) New Revision: 2178 Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/ParamsUI.jaxx isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java Log: Fix 'SaveSimulation" action on sensitivity Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/ParamsUI.jaxx =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/ParamsUI.jaxx 2009-05-05 12:50:17 UTC (rev 2177) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/ParamsUI.jaxx 2009-05-05 13:42:06 UTC (rev 2178) @@ -407,6 +407,20 @@ return result; } + /** + * TODO : Common code with {@link SimulUI#saveSimulation()} + */ + protected void saveSimulation() { + JFileChooser fc = new JFileChooser(); + int returnVal = fc.showSaveDialog(null); + + if (returnVal == JFileChooser.APPROVE_OPTION) { + File file = fc.getSelectedFile(); + //This is where a real application would open the file. + getContextValue(SimulAction.class).saveSimulation(file); + } + } + ]]> </script> <row> @@ -630,7 +644,7 @@ <JButton id="buttonSimulParamsSimulate" text="isisfish.common.simulate" onActionPerformed='simul()'/> </cell> <cell fill="horizontal" weightx="0.2"> - <JButton id="saveSimul" text="isisfish.simulation.menu.save" onActionPerformed='getParentContainer(SimulUI.class).saveSimulation()'/> + <JButton id="saveSimul" text="isisfish.simulation.menu.save" onActionPerformed='saveSimulation()'/> </cell> </row> </Table> Modified: isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java =================================================================== --- isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java 2009-05-05 12:50:17 UTC (rev 2177) +++ isis-fish/trunk/src/main/java/fr/ifremer/isisfish/ui/simulator/SimulAction.java 2009-05-05 13:42:06 UTC (rev 2178) @@ -188,7 +188,12 @@ } } - protected void saveSimulation(File f) { + /** + * Save current simulation to given file. + * + * @param f file to save smulation to + */ + public void saveSimulation(File f) { FileOutputStream fos = null; try { fos = new FileOutputStream(f);

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r2177 - isis-fish/trunk/src/main/assembly
by chatellier＠users.labs.libre-entreprise.org May 5, 2009

May 5, 2009

Author: chatellier Date: 2009-05-05 12:50:17 +0000 (Tue, 05 May 2009) New Revision: 2177 Modified: isis-fish/trunk/src/main/assembly/bin.xml isis-fish/trunk/src/main/assembly/go.bat isis-fish/trunk/src/main/assembly/go.sh Log: Ajout de la configuration jri dans les scripts Modified: isis-fish/trunk/src/main/assembly/bin.xml =================================================================== --- isis-fish/trunk/src/main/assembly/bin.xml 2009-05-04 19:31:22 UTC (rev 2176) +++ isis-fish/trunk/src/main/assembly/bin.xml 2009-05-05 12:50:17 UTC (rev 2177) @@ -35,7 +35,7 @@ </fileSet> <fileSet> <directory>src/main/assembly</directory> - <outputDirectory></outputDirectory> + <outputDirectory /> <filtered>true</filtered> <fileMode>0755</fileMode> <includes> @@ -51,9 +51,11 @@ </file> <file> <source>src/main/assembly/x86/jri.dll</source> + <outputDirectory>jri</outputDirectory> </file> <file> <source>src/main/assembly/x86/libjri.so</source> + <outputDirectory>jri</outputDirectory> </file> </files> </assembly> \ No newline at end of file Modified: isis-fish/trunk/src/main/assembly/go.bat =================================================================== --- isis-fish/trunk/src/main/assembly/go.bat 2009-05-04 19:31:22 UTC (rev 2176) +++ isis-fish/trunk/src/main/assembly/go.bat 2009-05-05 12:50:17 UTC (rev 2177) @@ -1 +1 @@ -java -Xmx512M -Xms512M -jar ${project.build.finalName}.${project.packaging} %1 %2 %3 %4 %5 %6 %7 %8 %9 > debug.txt \ No newline at end of file +java -Xmx512M -Xms512M -Djava.library.path=jri -DR.type=jni -jar ${project.build.finalName}.${project.packaging} %1 %2 %3 %4 %5 %6 %7 %8 %9 > debug.txt \ No newline at end of file Modified: isis-fish/trunk/src/main/assembly/go.sh =================================================================== --- isis-fish/trunk/src/main/assembly/go.sh 2009-05-04 19:31:22 UTC (rev 2176) +++ isis-fish/trunk/src/main/assembly/go.sh 2009-05-05 12:50:17 UTC (rev 2177) @@ -1,4 +1,6 @@ #!/bin/sh -MX=512M -java -Xmx$MX -Xms$MX -jar ${project.build.finalName}.${project.packaging} "$@" &> debug.txt \ No newline at end of file +MEMORY=-Xms512M -Xmx512M +JRIARGS=-Djava.library.path=jri -DR.type=jni + +java $MEMORY $JRIARGS -jar ${project.build.finalName}.${project.packaging} "$@" &> debug.txt \ No newline at end of file

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