Re: [Isis-fish-devel] your isis job killed 4 nodes on caparmor.
Bonjour Tina, les jobs d'hier ont été lancés sur mon compte (slehuta), qui n a pas le repertoire tmp. Habituellement les jobs sont lancés sur le compte de benjamin poussin qui lui a un repertoire tmp. Il semble que tu es la seule a pouvoir créer ce répertoire sur mon compte et celui de Stéphanie. Pourrais tu le faire ? Merci. Sigrid Tina.Odaka@ifremer.fr a écrit :
your isis job killed 4 nodes on caparmor. please do not forget to make standard output and standard error output saved in a file on /export/home12/ 's tmp directory or such. I asked that to the developper of isis, and he knows he killed the node before (for sometime!!) regards, tina
r1i0n8:/var/spool/PBS/undelivered # ls -lart total 638904 drwxr-xr-x 8 root root 133 Oct 13 06:57 .. -rw------- 1 slehuta emh 247177216 Oct 20 14:58 66544.service4.OU -rw------- 1 slehuta emh 243961856 Oct 20 14:58 66545.service4.OU -rw------- 1 slehuta emh 278286336 Oct 20 14:58 66546.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:24 66225.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:27 66224.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:28 66226.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:30 66223.service4.OU drwxrwxrwt 2 root root 4096 Oct 20 15:30 .
drwxr-xr-x 8 root root 133 Oct 12 21:22 .. -rw------- 1 slehuta emh 234369024 Oct 20 14:58 66543.service4.OU -rw------- 1 slehuta emh 300826624 Oct 20 14:59 66547.service4.OU -rw------- 1 slehuta emh 148013056 Oct 20 14:59 66548.service4.OU drwxrwxrwt 2 root root 78 Oct 20 14:59 . r1i2n10:/var/spool/PBS/undelivered #
r1i0n2:/var/spool/PBS/undelivered # ls -l total 633736 -rw------- 1 cstruski emh 888 Oct 20 15:16 66220.service4.OU -rw------- 1 cstruski emh 888 Oct 20 15:11 66221.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:15 66222.service4.OU -rw------- 1 estreby delecpp 1412 Oct 20 15:00 66500.service4.OU -rw------- 1 slehuta emh 695959552 Oct 20 14:58 66542.service4.OU r1i0n2:/var/spool/PBS/undelivered # r1i0n1:/var/spool/PBS/undelivered # ls -l total 636588 -rw------- 1 previf1 gprevimer 658 Oct 18 05:21 64690.service4.OU -rw------- 1 fdufois ceact 320 Oct 20 16:13 65620.service4.OU -rw------- 1 previf1 gprevimer 658 Oct 20 05:21 66081.service4.OU -rw------- 1 ikhojast physed 881 Oct 20 15:22 66453.service4.OU -rw------- 1 cstruski emh 833 Oct 20 15:10 66513.service4.OU -rw------- 1 slehuta emh 785104896 Oct 20 15:01 66541.service4.OU r1i0n1:/var/spool/PBS/undelivered #
-- Sigrid LEHUTA ~ ><> ~ Doctorante Département Ecologie et Modèles pour l'Halieutique IFREMER, rue de l'ile d'Yeu BP 21105 44311 Nantes Cedex 03 Tél : +33 (0)2 40 37 41 23 (interne : 8123)
Bonjour, it is not only the problem of creating the 'directory tmp' it is in the script which isis copy to caparmor, that it submits to qsub. there is java xxxx >& toto where ' >& toto' is missing. so you can do like java xxxx >& /export/home1/slehuta/toto regards, tina Sigrid LEHUTA a écrit :
Bonjour Tina, les jobs d'hier ont été lancés sur mon compte (slehuta), qui n a pas le repertoire tmp. Habituellement les jobs sont lancés sur le compte de benjamin poussin qui lui a un repertoire tmp. Il semble que tu es la seule a pouvoir créer ce répertoire sur mon compte et celui de Stéphanie. Pourrais tu le faire ? Merci. Sigrid
Tina.Odaka@ifremer.fr a écrit :
your isis job killed 4 nodes on caparmor. please do not forget to make standard output and standard error output saved in a file on /export/home12/ 's tmp directory or such. I asked that to the developper of isis, and he knows he killed the node before (for sometime!!) regards, tina
r1i0n8:/var/spool/PBS/undelivered # ls -lart total 638904 drwxr-xr-x 8 root root 133 Oct 13 06:57 .. -rw------- 1 slehuta emh 247177216 Oct 20 14:58 66544.service4.OU -rw------- 1 slehuta emh 243961856 Oct 20 14:58 66545.service4.OU -rw------- 1 slehuta emh 278286336 Oct 20 14:58 66546.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:24 66225.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:27 66224.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:28 66226.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:30 66223.service4.OU drwxrwxrwt 2 root root 4096 Oct 20 15:30 .
drwxr-xr-x 8 root root 133 Oct 12 21:22 .. -rw------- 1 slehuta emh 234369024 Oct 20 14:58 66543.service4.OU -rw------- 1 slehuta emh 300826624 Oct 20 14:59 66547.service4.OU -rw------- 1 slehuta emh 148013056 Oct 20 14:59 66548.service4.OU drwxrwxrwt 2 root root 78 Oct 20 14:59 . r1i2n10:/var/spool/PBS/undelivered #
r1i0n2:/var/spool/PBS/undelivered # ls -l total 633736 -rw------- 1 cstruski emh 888 Oct 20 15:16 66220.service4.OU -rw------- 1 cstruski emh 888 Oct 20 15:11 66221.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:15 66222.service4.OU -rw------- 1 estreby delecpp 1412 Oct 20 15:00 66500.service4.OU -rw------- 1 slehuta emh 695959552 Oct 20 14:58 66542.service4.OU r1i0n2:/var/spool/PBS/undelivered # r1i0n1:/var/spool/PBS/undelivered # ls -l total 636588 -rw------- 1 previf1 gprevimer 658 Oct 18 05:21 64690.service4.OU -rw------- 1 fdufois ceact 320 Oct 20 16:13 65620.service4.OU -rw------- 1 previf1 gprevimer 658 Oct 20 05:21 66081.service4.OU -rw------- 1 ikhojast physed 881 Oct 20 15:22 66453.service4.OU -rw------- 1 cstruski emh 833 Oct 20 15:10 66513.service4.OU -rw------- 1 slehuta emh 785104896 Oct 20 15:01 66541.service4.OU r1i0n1:/var/spool/PBS/undelivered #
-- =================================================== Tina Odaka RIC - IDM - IFREMER Tel: +33 (0)2 98 22 41 85 Fax: +33 (0)2 98 22 45 46 email: Tina.Odaka@ifremer.fr http://www.ifremer.fr/pcim ==================================================
Tina ODAKA a écrit :
Bonjour, it is not only the problem of creating the 'directory tmp' it is in the script which isis copy to caparmor, that it submits to qsub. there is java xxxx >& toto where ' >& toto' is missing. I will add this to launch script.
-- Éric <chatellier@codelutin.com> Tel: 02 40 50 29 28 http://www.codelutin.com
Hi Tina, Isis developper has modified the code you mentionned. I will try to run some simulations this afternoon to check it. Let me know if any problem occurs, see you tomorrow Sigrid Tina ODAKA a écrit :
Bonjour, it is not only the problem of creating the 'directory tmp' it is in the script which isis copy to caparmor, that it submits to qsub. there is java xxxx >& toto where ' >& toto' is missing.
so you can do like java xxxx >& /export/home1/slehuta/toto
regards, tina
Sigrid LEHUTA a écrit :
Bonjour Tina, les jobs d'hier ont été lancés sur mon compte (slehuta), qui n a pas le repertoire tmp. Habituellement les jobs sont lancés sur le compte de benjamin poussin qui lui a un repertoire tmp. Il semble que tu es la seule a pouvoir créer ce répertoire sur mon compte et celui de Stéphanie. Pourrais tu le faire ? Merci. Sigrid
Tina.Odaka@ifremer.fr a écrit :
your isis job killed 4 nodes on caparmor. please do not forget to make standard output and standard error output saved in a file on /export/home12/ 's tmp directory or such. I asked that to the developper of isis, and he knows he killed the node before (for sometime!!) regards, tina
r1i0n8:/var/spool/PBS/undelivered # ls -lart total 638904 drwxr-xr-x 8 root root 133 Oct 13 06:57 .. -rw------- 1 slehuta emh 247177216 Oct 20 14:58 66544.service4.OU -rw------- 1 slehuta emh 243961856 Oct 20 14:58 66545.service4.OU -rw------- 1 slehuta emh 278286336 Oct 20 14:58 66546.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:24 66225.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:27 66224.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:28 66226.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:30 66223.service4.OU drwxrwxrwt 2 root root 4096 Oct 20 15:30 .
drwxr-xr-x 8 root root 133 Oct 12 21:22 .. -rw------- 1 slehuta emh 234369024 Oct 20 14:58 66543.service4.OU -rw------- 1 slehuta emh 300826624 Oct 20 14:59 66547.service4.OU -rw------- 1 slehuta emh 148013056 Oct 20 14:59 66548.service4.OU drwxrwxrwt 2 root root 78 Oct 20 14:59 . r1i2n10:/var/spool/PBS/undelivered #
r1i0n2:/var/spool/PBS/undelivered # ls -l total 633736 -rw------- 1 cstruski emh 888 Oct 20 15:16 66220.service4.OU -rw------- 1 cstruski emh 888 Oct 20 15:11 66221.service4.OU -rw------- 1 cstruski emh 887 Oct 20 15:15 66222.service4.OU -rw------- 1 estreby delecpp 1412 Oct 20 15:00 66500.service4.OU -rw------- 1 slehuta emh 695959552 Oct 20 14:58 66542.service4.OU r1i0n2:/var/spool/PBS/undelivered # r1i0n1:/var/spool/PBS/undelivered # ls -l total 636588 -rw------- 1 previf1 gprevimer 658 Oct 18 05:21 64690.service4.OU -rw------- 1 fdufois ceact 320 Oct 20 16:13 65620.service4.OU -rw------- 1 previf1 gprevimer 658 Oct 20 05:21 66081.service4.OU -rw------- 1 ikhojast physed 881 Oct 20 15:22 66453.service4.OU -rw------- 1 cstruski emh 833 Oct 20 15:10 66513.service4.OU -rw------- 1 slehuta emh 785104896 Oct 20 15:01 66541.service4.OU r1i0n1:/var/spool/PBS/undelivered #
-- Sigrid LEHUTA ~ ><> ~ Doctorante Département Ecologie et Modèles pour l'Halieutique IFREMER, rue de l'ile d'Yeu BP 21105 44311 Nantes Cedex 03 Tél : +33 (0)2 40 37 41 23 (interne : 8123)
participants (3)
-
Eric Chatellier -
Sigrid LEHUTA -
Tina ODAKA