Core package of FLR, fisheries modelling in R.

[Package List] [Top]

Documentation for package ‘FLCore’ version 3.0

Help Pages

A B C D E F G H I J L M N P Q R S T U V W X Y misc

-- --

FLCore-package Core package of FLR, fisheries modelling in R.

-- --

$<-,FLlst,character-method Extract or Replace Parts of an FLR Object
+,FLStock,FLStock-method Merging FLStock objects

-- A --

ab2sv Stock-Recruitment models
ac FLCore-internal
AIC,FLModel,missing-method Akaike information criterion (AIC) method
AIC,FLModel,numeric-method Akaike information criterion (AIC) method
apply,ANY,missing,missing-method Method apply
apply,FLQuant,numeric,function-method Method apply
areaMeans Methods to compute sums, means and vars of FLQuant objects
areaMeans,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
areaMeans-methods Methods to compute sums, means and vars of FLQuant objects
areaSums Methods to compute sums, means and vars of FLQuant objects
areaSums,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
areaSums-methods Methods to compute sums, means and vars of FLQuant objects
areaVars Methods to compute sums, means and vars of FLQuant objects
areaVars,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
areaVars-methods Methods to compute sums, means and vars of FLQuant objects
Arith,FLArray,FLArray-method Arithmetic methods for FLQuant objects
Arith,FLArray,numeric-method Arithmetic methods for FLQuant objects
Arith,FLCohort,FLCohort-method Arithmetic methods for FLQuant objects
Arith,FLQuant,FLQuant-method Arithmetic methods for FLQuant objects
Arith,FLQuants,FLQuants-method Arithmetic methods for FLQuant objects
Arith,numeric,FLArray-method Arithmetic methods for FLQuant objects
as.data.frame,FLArray,missing,missing-method Method as.data.frame
as.data.frame,FLCatch,missing,missing-method Method as.data.frame
as.data.frame,FLCohort,ANY,ANY-method Method as.data.frame
as.data.frame,FLCohort,missing,missing-method Method as.data.frame
as.data.frame,FLCohorts,missing,missing-method Method as.data.frame
as.data.frame,FLComp,missing,missing-method Method as.data.frame
as.data.frame,FLFleet,missing,missing-method Method as.data.frame
as.data.frame,FLPar,ANY,ANY-method Method as.data.frame
as.data.frame,FLQuant,missing,missing-method Method as.data.frame
as.data.frame,FLQuants,missing,missing-method Method as.data.frame
as.data.frame-FLCore Method as.data.frame
as.FLBiol Old S3 coercion methods
as.FLBiol,FLBiol-method Old S3 coercion methods
as.FLBiol,FLStock-method Old S3 coercion methods
as.FLBiol-methods Old S3 coercion methods
as.FLIndex Old S3 coercion methods
as.FLIndex,FLFleet-method Old S3 coercion methods
as.FLIndex-methods Old S3 coercion methods
as.FLQuant Old S3 coercion methods
as.FLQuant,array-method Old S3 coercion methods
as.FLQuant,data.frame-method Old S3 coercion methods
as.FLQuant,FLQuant-method Old S3 coercion methods
as.FLQuant,matrix-method Old S3 coercion methods
as.FLQuant,vector-method Old S3 coercion methods
as.FLQuant-methods Old S3 coercion methods
as.FLSR Old S3 coercion methods
as.FLSR,FLBiol-method Old S3 coercion methods
as.FLSR,FLStock-method Old S3 coercion methods
as.FLSR-methods Old S3 coercion methods
as.FLStock Old S3 coercion methods

-- B --

barchart,formula,FLComp-method Lattice plots
barchart,formula,FLQuant-method Lattice plots
bevholt Stock-Recruitment models
bevholt.ar1 Stock-Recruitment models
bevholt.c.a Stock-Recruitment models
bevholt.c.b Stock-Recruitment models
bevholt.d Stock-Recruitment models
bevholt.ndc Stock-Recruitment models
Bevholt.SV Stock-Recruitment models
bevholt.sv Stock-Recruitment models
BIC,FLModel-method Bayesian information criterion (BIC) method
bkey Generate key for bubbles plot
bkey,list-method Generate key for bubbles plot
bkey-methods Generate key for bubbles plot
bt4 FLCore datasets
bubbles Bubbles plot
bubbles,formula,data.frame-method Bubbles plot
bubbles,formula,FLCohort-method Bubbles plot
bubbles,formula,FLQuant-method Bubbles plot
bubbles,formula,FLQuants-method Bubbles plot
bubbles-methods Bubbles plot
bwplot,formula,FLComp-method Lattice plots
bwplot,formula,FLQuant-method Lattice plots

-- C --

capacity Accesor and replacement methods for complex S4 classes
capacity,FLFleet-method Accesor and replacement methods for complex S4 classes
capacity-methods Accesor and replacement methods for complex S4 classes
capacity<- Accesor and replacement methods for complex S4 classes
capacity<-,FLFleet,FLQuant-method Accesor and replacement methods for complex S4 classes
capacity<-,FLFleet,numeric-method Accesor and replacement methods for complex S4 classes
capacity<--methods Accesor and replacement methods for complex S4 classes
catch Accesor and replacement methods for complex S4 classes
catch,FLCatch-method Accesor and replacement methods for the FLCatch class
catch,FLCatches-method Accesor and replacement methods for the FLCatch class
catch,FLFleet-method Accesor and replacement methods for the FLCatch class
catch,FLMetier-method Accesor and replacement methods for the FLCatch class
catch,FLMetiers-method Accesor and replacement methods for the FLCatch class
catch,FLStock-method Accesor and replacement methods for complex S4 classes
catch-methods Accesor and replacement methods for complex S4 classes
catch.n Accesor and replacement methods for complex S4 classes
catch.n,FLBiol-method Class FLBiol
catch.n,FLCatch-method Accesor and replacement methods for the FLCatch class
catch.n,FLCatches-method Accesor and replacement methods for the FLCatch class
catch.n,FLFleet-method Accesor and replacement methods for the FLCatch class
catch.n,FLIndex-method Accesor and replacement methods for complex S4 classes
catch.n,FLMetier-method Accesor and replacement methods for the FLCatch class
catch.n,FLMetiers-method Accesor and replacement methods for the FLCatch class
catch.n,FLStock-method Accesor and replacement methods for complex S4 classes
catch.n-methods Accesor and replacement methods for complex S4 classes
catch.n<- Accesor and replacement methods for complex S4 classes
catch.n<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.n<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.n<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.n<-,FLIndex,FLQuant-method Accesor and replacement methods for complex S4 classes
catch.n<-,FLIndex,numeric-method Accesor and replacement methods for complex S4 classes
catch.n<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.n<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.n<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
catch.n<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
catch.n<--methods Accesor and replacement methods for complex S4 classes
catch.q Accesor and replacement methods for complex S4 classes
catch.q,FLCatch-method Accesor and replacement methods for the FLCatch class
catch.q,FLCatches-method Accesor and replacement methods for the FLCatch class
catch.q,FLFleet-method Accesor and replacement methods for the FLCatch class
catch.q,FLMetier-method Accesor and replacement methods for the FLCatch class
catch.q,FLMetiers-method Accesor and replacement methods for the FLCatch class
catch.q-methods Accesor and replacement methods for complex S4 classes
catch.q<- Accesor and replacement methods for complex S4 classes
catch.q<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.q<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.q<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.q<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.q<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.q<--methods Accesor and replacement methods for complex S4 classes
catch.sel Accesor and replacement methods for complex S4 classes
catch.sel,FLCatch-method Accesor and replacement methods for the FLCatch class
catch.sel,FLCatches-method Accesor and replacement methods for the FLCatch class
catch.sel,FLFleet-method Accesor and replacement methods for the FLCatch class
catch.sel,FLMetier-method Accesor and replacement methods for the FLCatch class
catch.sel,FLMetiers-method Accesor and replacement methods for the FLCatch class
catch.sel-methods Accesor and replacement methods for complex S4 classes
catch.sel<- Accesor and replacement methods for complex S4 classes
catch.sel<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.sel<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.sel<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.sel<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.sel<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.sel<--methods Accesor and replacement methods for complex S4 classes
catch.wt Accesor and replacement methods for complex S4 classes
catch.wt,FLCatch-method Accesor and replacement methods for the FLCatch class
catch.wt,FLCatches-method Accesor and replacement methods for the FLCatch class
catch.wt,FLFleet-method Accesor and replacement methods for the FLCatch class
catch.wt,FLIndex-method Accesor and replacement methods for complex S4 classes
catch.wt,FLMetier-method Accesor and replacement methods for the FLCatch class
catch.wt,FLMetiers-method Accesor and replacement methods for the FLCatch class
catch.wt,FLStock-method Accesor and replacement methods for complex S4 classes
catch.wt-methods Accesor and replacement methods for complex S4 classes
catch.wt<- Accesor and replacement methods for complex S4 classes
catch.wt<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.wt<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.wt<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.wt<-,FLIndex,FLQuant-method Accesor and replacement methods for complex S4 classes
catch.wt<-,FLIndex,numeric-method Accesor and replacement methods for complex S4 classes
catch.wt<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.wt<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
catch.wt<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
catch.wt<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
catch.wt<--methods Accesor and replacement methods for complex S4 classes
catch<- Accesor and replacement methods for complex S4 classes
catch<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
catch<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
catch<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
catch<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
catch<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
catch<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
catch<-,FLStock,FLQuants-method Accesor and replacement methods for complex S4 classes
catch<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
catch<--methods Accesor and replacement methods for complex S4 classes
catches Accesor and replacement methods for complex S4 classes
catches,FLFleet-method Accesor and replacement methods for the FLCatch class
catches,FLMetier-method Accesor and replacement methods for the FLCatch class
catches,FLMetiers-method Accesor and replacement methods for the FLCatch class
catches-methods Accesor and replacement methods for complex S4 classes
catches<- Accesor and replacement methods for complex S4 classes
catches<-,FLMetier,ANY,FLCatch-method Accesor and replacement methods for the FLCatch class
catches<-,FLMetier,ANY,FLCatches-method Accesor and replacement methods for the FLCatch class
catches<--methods Accesor and replacement methods for complex S4 classes
catchNames Method catchNames
catchNames,FLCatch-method Method catchNames
catchNames,FLCatches-method Method catchNames
catchNames,FLFleet-method Method catchNames
catchNames,FLFleets-method Method catchNames
catchNames,FLMetier-method Method catchNames
catchNames,FLMetiers-method Method catchNames
catchNames-methods Method catchNames
ccplot Catch-curves plot
ccplot,formula,FLCohort-method Catch-curves plot
ccplot-methods Catch-curves plot
checkEqual FLtest functions for running simple units tests
checkFail FLtest functions for running simple units tests
checkFalse FLtest functions for running simple units tests
checkIdentical FLtest functions for running simple units tests
checkRun FLtest functions for running simple units tests
checkTrue FLtest functions for running simple units tests
coerce,data.frame,FLComp-method Method coerce
coerce,data.frame,FLIndex-method Method coerce
coerce,data.frame,FLQuant-method Method coerce
coerce,data.frame,FLStock-method Method coerce
coerce,FLArray,data.frame-method Method as.data.frame
coerce,FLBiol,FLIndex-method Method coerce
coerce,FLBiol,FLStock-method Method coerce
coerce,FLCatch,FLIndex-method Method coerce
coerce,FLCatch,FLMetier-method Method coerce
coerce,FLCatch,FLMetiers-method Method coerce
coerce,FLCatch,FLStock-method Method coerce
coerce,FLCohort,FLQuant-method Method coerce
coerce,FLComp,FLQuants-method Method coerce
coerce,FLlst,list-method Method coerce
coerce,FLPar,FLQuant-method Method coerce
coerce,FLPar,list-method Method coerce
coerce,FLPar,numeric-method Method coerce
coerce,FLQuant,FLCohort-method Method coerce
coerce,FLQuant,FLPar-method Method coerce
coerce,FLStock,FLBiol-method Method coerce
coerce,FLStock,FLCatch-method Method coerce
coerce,FLStock,FLFleet-method Method coerce
coerce,FLStock,FLIndex-method Method coerce
coerce,FLStock,FLMetier-method Method coerce
coerce,NULL,FLBiol-method Method coerce
coerce,NULL,FLCatch-method Method coerce
coerce,NULL,FLFleet-method Method coerce
coerce,NULL,FLIndex-method Method coerce
coerce,NULL,FLQuant-method Method coerce
coerce,NULL,FLStock-method Method coerce
computeCatch Methods to compute total catch, landings, discards and stock biomass
computeCatch,FLCatch-method Methods to compute total catch, landings, discards and stock biomass
computeCatch,FLFleet-method Methods to compute total catch, landings, discards and stock biomass
computeCatch,FLIndex-method Methods to compute total catch, landings, discards and stock biomass
computeCatch,FLMetier-method Methods to compute total catch, landings, discards and stock biomass
computeCatch,FLStock-method Methods to compute total catch, landings, discards and stock biomass
computeCatch-methods Methods to compute total catch, landings, discards and stock biomass
computeDiscards Methods to compute total catch, landings, discards and stock biomass
computeDiscards,FLCatch-method Methods to compute total catch, landings, discards and stock biomass
computeDiscards,FLFleet-method Methods to compute total catch, landings, discards and stock biomass
computeDiscards,FLMetier-method Methods to compute total catch, landings, discards and stock biomass
computeDiscards,FLStock-method Methods to compute total catch, landings, discards and stock biomass
computeDiscards-methods Methods to compute total catch, landings, discards and stock biomass
computeLandings Methods to compute total catch, landings, discards and stock biomass
computeLandings,FLCatch-method Methods to compute total catch, landings, discards and stock biomass
computeLandings,FLFleet-method Methods to compute total catch, landings, discards and stock biomass
computeLandings,FLMetier-method Methods to compute total catch, landings, discards and stock biomass
computeLandings,FLStock-method Methods to compute total catch, landings, discards and stock biomass
computeLandings-methods Methods to compute total catch, landings, discards and stock biomass
computeStock Methods to compute total catch, landings, discards and stock biomass
computeStock,FLBiol-method Methods to compute total catch, landings, discards and stock biomass
computeStock,FLCatch-method Methods to compute total catch, landings, discards and stock biomass
computeStock,FLStock-method Methods to compute total catch, landings, discards and stock biomass
computeStock-methods Methods to compute total catch, landings, discards and stock biomass
convert6d FLCore-internal
convertFLPar FLCore-internal
convertFLPar,FLModel-method FLCore-internal
convertFLPar,FLPar-method FLCore-internal
convertFLPar-methods FLCore-internal
covar Accesor and replacement methods for complex S4 classes
covar,FLSR-method Accesor and replacement methods for complex S4 classes
covar-methods Accesor and replacement methods for complex S4 classes
covar<- Accesor and replacement methods for complex S4 classes
covar<-,FLSR,FLQuants-method Accesor and replacement methods for complex S4 classes
covar<-,FLSR-method Accesor and replacement methods for complex S4 classes
covar<--methods Accesor and replacement methods for complex S4 classes
createFLAccesors Create accesor methods for a given class
crewshare Accesor and replacement methods for complex S4 classes
crewshare,FLFleet-method Accesor and replacement methods for complex S4 classes
crewshare-methods Accesor and replacement methods for complex S4 classes
crewshare<- Accesor and replacement methods for complex S4 classes
crewshare<-,FLFleet,FLQuant-method Accesor and replacement methods for complex S4 classes
crewshare<-,FLFleet,numeric-method Accesor and replacement methods for complex S4 classes
crewshare<--methods Accesor and replacement methods for complex S4 classes
cv Coefficient of Variation of FLR objects with multiple iterations
cv,FLModel-method Coefficient of Variation of FLR objects with multiple iterations
cv,FLQuant-method Coefficient of Variation of FLR objects with multiple iterations
cv-methods Coefficient of Variation of FLR objects with multiple iterations

-- D --

densityplot,formula,FLPar-method Lattice plots
desc Accesor and replacement methods for complex S4 classes
desc,FLBiol-method Accesor and replacement methods for complex S4 classes
desc,FLCatch-method Accesor and replacement methods for complex S4 classes
desc,FLFleet-method Accesor and replacement methods for complex S4 classes
desc,FLIndex-method Accesor and replacement methods for complex S4 classes
desc,FLMetier-method Accesor and replacement methods for complex S4 classes
desc,FLModel-method Accesor and replacement methods for complex S4 classes
desc,FLStock-method Accesor and replacement methods for complex S4 classes
desc-methods Accesor and replacement methods for complex S4 classes
desc<- Accesor and replacement methods for complex S4 classes
desc<-,FLBiol,character-method Accesor and replacement methods for complex S4 classes
desc<-,FLCatch,character-method Accesor and replacement methods for complex S4 classes
desc<-,FLFleet,character-method Accesor and replacement methods for complex S4 classes
desc<-,FLIndex,character-method Accesor and replacement methods for complex S4 classes
desc<-,FLMetier,character-method Accesor and replacement methods for complex S4 classes
desc<-,FLModel,character-method Accesor and replacement methods for complex S4 classes
desc<-,FLStock,character-method Accesor and replacement methods for complex S4 classes
desc<--methods Accesor and replacement methods for complex S4 classes
details Accesor and replacement methods for complex S4 classes
details,FLModel-method Accesor and replacement methods for complex S4 classes
details-methods Accesor and replacement methods for complex S4 classes
details<- Accesor and replacement methods for complex S4 classes
details<-,FLModel,list-method Accesor and replacement methods for complex S4 classes
details<--methods Accesor and replacement methods for complex S4 classes
dimMeans Methods to compute sums, means and vars of FLQuant objects
dimMeans,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
dimMeans-methods Methods to compute sums, means and vars of FLQuant objects
dimnames<-,ANY,missing-method Modify dimnames of an FLQuant
dimnames<-,FLQuant,list-method Modify dimnames of an FLQuant
dimnames<-,FLStock,list-method Modify dimnames of an FLQuant
dims List with information on object dimensions
dims,FLCohort-method List with information on object dimensions
dims,FLComp-method List with information on object dimensions
dims,FLFleet-method List with information on object dimensions
dims,FLFleets-method List with information on object dimensions
dims,FLIndex-method List with information on object dimensions
dims,FLPar-method List with information on object dimensions
dims,FLQuant-method List with information on object dimensions
dims-methods List with information on object dimensions
dimSums Methods to compute sums, means and vars of FLQuant objects
dimSums,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
dimSums-methods Methods to compute sums, means and vars of FLQuant objects
dimVars Methods to compute sums, means and vars of FLQuant objects
dimVars,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
dimVars-methods Methods to compute sums, means and vars of FLQuant objects
discards Accesor and replacement methods for complex S4 classes
discards,FLCatch-method Accesor and replacement methods for the FLCatch class
discards,FLCatches-method Accesor and replacement methods for the FLCatch class
discards,FLFleet-method Accesor and replacement methods for the FLCatch class
discards,FLMetier-method Accesor and replacement methods for the FLCatch class
discards,FLMetiers-method Accesor and replacement methods for the FLCatch class
discards,FLStock-method Accesor and replacement methods for complex S4 classes
discards-methods Accesor and replacement methods for complex S4 classes
discards.n Accesor and replacement methods for complex S4 classes
discards.n,FLCatch-method Accesor and replacement methods for the FLCatch class
discards.n,FLCatches-method Accesor and replacement methods for the FLCatch class
discards.n,FLFleet-method Accesor and replacement methods for the FLCatch class
discards.n,FLIndex-method Accesor and replacement methods for complex S4 classes
discards.n,FLMetier-method Accesor and replacement methods for the FLCatch class
discards.n,FLMetiers-method Accesor and replacement methods for the FLCatch class
discards.n,FLStock-method Accesor and replacement methods for complex S4 classes
discards.n-methods Accesor and replacement methods for complex S4 classes
discards.n<- Accesor and replacement methods for complex S4 classes
discards.n<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.n<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.n<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.n<-,FLIndex,FLQuant-method Accesor and replacement methods for complex S4 classes
discards.n<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.n<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.n<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
discards.n<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
discards.n<--methods Accesor and replacement methods for complex S4 classes
discards.q Accesor and replacement methods for complex S4 classes
discards.q,FLCatch-method Accesor and replacement methods for the FLCatch class
discards.q,FLCatches-method Accesor and replacement methods for the FLCatch class
discards.q,FLFleet-method Accesor and replacement methods for the FLCatch class
discards.q,FLMetier-method Accesor and replacement methods for the FLCatch class
discards.q,FLMetiers-method Accesor and replacement methods for the FLCatch class
discards.q-methods Accesor and replacement methods for complex S4 classes
discards.q<- Accesor and replacement methods for complex S4 classes
discards.q<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.q<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.q<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.q<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.q<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.q<--methods Accesor and replacement methods for complex S4 classes
discards.sel Accesor and replacement methods for complex S4 classes
discards.sel,FLCatch-method Accesor and replacement methods for the FLCatch class
discards.sel,FLCatches-method Accesor and replacement methods for the FLCatch class
discards.sel,FLFleet-method Accesor and replacement methods for the FLCatch class
discards.sel,FLMetier-method Accesor and replacement methods for the FLCatch class
discards.sel,FLMetiers-method Accesor and replacement methods for the FLCatch class
discards.sel-methods Accesor and replacement methods for complex S4 classes
discards.sel<- Accesor and replacement methods for complex S4 classes
discards.sel<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.sel<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.sel<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.sel<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.sel<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.sel<--methods Accesor and replacement methods for complex S4 classes
discards.wt Accesor and replacement methods for complex S4 classes
discards.wt,FLCatch-method Accesor and replacement methods for the FLCatch class
discards.wt,FLCatches-method Accesor and replacement methods for the FLCatch class
discards.wt,FLFleet-method Accesor and replacement methods for the FLCatch class
discards.wt,FLIndex-method Accesor and replacement methods for complex S4 classes
discards.wt,FLMetier-method Accesor and replacement methods for the FLCatch class
discards.wt,FLMetiers-method Accesor and replacement methods for the FLCatch class
discards.wt,FLStock-method Accesor and replacement methods for complex S4 classes
discards.wt-methods Accesor and replacement methods for complex S4 classes
discards.wt<- Accesor and replacement methods for complex S4 classes
discards.wt<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.wt<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.wt<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.wt<-,FLIndex,FLQuant-method Accesor and replacement methods for complex S4 classes
discards.wt<-,FLIndex,numeric-method Accesor and replacement methods for complex S4 classes
discards.wt<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.wt<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
discards.wt<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
discards.wt<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
discards.wt<--methods Accesor and replacement methods for complex S4 classes
discards<- Accesor and replacement methods for complex S4 classes
discards<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
discards<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
discards<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
discards<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
discards<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
discards<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
discards<-,FLStock,FLQuants-method Accesor and replacement methods for complex S4 classes
discards<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
discards<--methods Accesor and replacement methods for complex S4 classes
dotplot,formula,FLComp-method Lattice plots
dotplot,formula,FLQuant-method Lattice plots

-- E --

E Method E
E,FLQuant-method Method E
E-methods Method E
effort Accesor and replacement methods for complex S4 classes
effort,FLFleet,character-method Accesor and replacement methods for complex S4 classes
effort,FLFleet,missing-method Accesor and replacement methods for complex S4 classes
effort,FLIndex,missing-method Accesor and replacement methods for complex S4 classes
effort-methods Accesor and replacement methods for complex S4 classes
effort<- Accesor and replacement methods for complex S4 classes
effort<-,FLFleet,FLQuant-method Accesor and replacement methods for complex S4 classes
effort<-,FLFleet,numeric-method Accesor and replacement methods for complex S4 classes
effort<-,FLIndex,FLQuant-method Accesor and replacement methods for complex S4 classes
effort<-,FLIndex,numeric-method Accesor and replacement methods for complex S4 classes
effort<--methods Accesor and replacement methods for complex S4 classes
effshare Accesor and replacement methods for complex S4 classes
effshare,FLFleet-method Accesor and replacement methods for complex S4 classes
effshare,FLMetier-method Accesor and replacement methods for complex S4 classes
effshare,FLMetiers-method Accesor and replacement methods for complex S4 classes
effshare-methods Accesor and replacement methods for complex S4 classes
effshare<- Accesor and replacement methods for complex S4 classes
effshare<-,FLMetier,FLQuant-method Accesor and replacement methods for complex S4 classes
effshare<-,FLMetier,numeric-method Accesor and replacement methods for complex S4 classes
effshare<--methods Accesor and replacement methods for complex S4 classes
expand Trim FLR objects using named dimensions
expand,FLArray-method Trim FLR objects using named dimensions
expand,FLComp-method Trim FLR objects using named dimensions
expand,FLQuant-method Trim FLR objects using named dimensions
expand,FLStock-method Trim FLR objects using named dimensions
expand-methods Trim FLR objects using named dimensions
Extract-FLCore Extract or Replace Parts of an FLR Object

-- F --

fbar Calculates mean harvest rate or fishing mortality
fbar,FLBiol-method Calculates mean harvest rate or fishing mortality
fbar,FLStock-method Calculates mean harvest rate or fishing mortality
fbar-methods Calculates mean harvest rate or fishing mortality
fcost Accesor and replacement methods for complex S4 classes
fcost,FLFleet-method Accesor and replacement methods for complex S4 classes
fcost-methods Accesor and replacement methods for complex S4 classes
fcost<- Accesor and replacement methods for complex S4 classes
fcost<-,FLFleet,FLQuant-method Accesor and replacement methods for complex S4 classes
fcost<-,FLFleet,numeric-method Accesor and replacement methods for complex S4 classes
fcost<--methods Accesor and replacement methods for complex S4 classes
fec Accesor and replacement methods for complex S4 classes
fec,FLBiol-method Accesor and replacement methods for complex S4 classes
fec-methods Accesor and replacement methods for complex S4 classes
fec<- Accesor and replacement methods for complex S4 classes
fec<-,FLBiol,FLQuant-method Accesor and replacement methods for complex S4 classes
fec<-,FLBiol,numeric-method Accesor and replacement methods for complex S4 classes
fec<--methods Accesor and replacement methods for complex S4 classes
finishTest FLtest functions for running simple units tests
fitted,ANY-method Accesor and replacement methods for complex S4 classes
fitted,FLModel-method Accesor and replacement methods for complex S4 classes
fitted<- Accesor and replacement methods for complex S4 classes
fitted<-,FLModel,FLArray-method Accesor and replacement methods for complex S4 classes
fitted<-,FLModel,numeric-method Accesor and replacement methods for complex S4 classes
fitted<--methods Accesor and replacement methods for complex S4 classes
FLArray Class FLArray
FLArray-class Class FLArray
FLBiol Class FLBiol
FLBiol,FLQuant-method Class FLBiol
FLBiol,missing-method Class FLBiol
FLBiol-class Class FLBiol
FLBiol-methods Class FLBiol
FLBiols Class FLBiols
FLBiols,ANY-method Class FLBiols
FLBiols,list-method Class FLBiols
FLBiols,missing-method Class FLBiols
FLBiols-class Class FLBiols
FLBiols-methods Class FLBiols
flc2flq Coerce FLCohort into FLQuant.
flc2flq,FLCohort-method Coerce FLCohort into FLQuant.
flc2flq-methods Coerce FLCohort into FLQuant.
FLCatch Class FLCatch
FLCatch,FLQuant-method Class FLCatch
FLCatch,missing-method Class FLCatch
FLCatch-accesors Accesor and replacement methods for the FLCatch class
FLCatch-class Class FLCatch
FLCatch-methods Class FLCatch
FLCatches Class FLCatches
FLCatches,ANY-method Class FLCatches
FLCatches,list-method Class FLCatches
FLCatches,missing-method Class FLCatches
FLCatches-class Class FLCatches
FLCatches-methods Class FLCatches
FLCohort Class FLCohort
FLCohort,array-method Class FLCohort
FLCohort,FLCohort-method Class FLCohort
FLCohort,FLQuant-method Class FLCohort
FLCohort,missing-method Class FLCohort
FLCohort-class Class FLCohort
FLCohort-methods Class FLCohort
FLCohorts Class FLCohorts
FLCohorts,ANY-method Class FLCohorts
FLCohorts,FLCohorts-method Class FLCohorts
FLCohorts,list-method Class FLCohorts
FLCohorts,missing-method Class FLCohorts
FLCohorts-class Class FLCohorts
FLCohorts-methods Class FLCohorts
FLComp Class FLComp
FLComp-class Class FLComp
FLCore Core package of FLR, fisheries modelling in R.
FLFleet Class FLFleet
FLFleet,FLCatch-method Class FLFleet
FLFleet,FLCatches-method Class FLFleet
FLFleet,FLFleet-method Class FLFleet
FLFleet,FLMetier-method Class FLFleet
FLFleet,FLMetiers-method Class FLFleet
FLFleet,FLQuant-method Class FLFleet
FLFleet,missing-method Class FLFleet
FLFleet-class Class FLFleet
FLFleet-methods Class FLFleet
FLFleets Class FLFleets
FLFleets,ANY-method Class FLFleets
FLFleets,list-method Class FLFleets
FLFleets,missing-method Class FLFleets
FLFleets-class Class FLFleets
FLFleets-methods Class FLFleets
FLIndex Class FLIndex
FLIndex,FLQuant-method Class FLIndex
FLIndex,missing-method Class FLIndex
FLIndex-class Class FLIndex
FLIndex-methods Class FLIndex
FLIndices Class FLIndices
FLIndices,ANY-method Class FLIndices
FLIndices,list-method Class FLIndices
FLIndices,missing-method Class FLIndices
FLIndices-class Class FLIndices
FLIndices-methods Class FLIndices
FLlst Class FLlst
FLlst,ANY-method Class FLlst
FLlst,list-method Class FLlst
FLlst,missing-method Class FLlst
FLlst-class Class FLlst
FLlst-methods Class FLlst
FLMetier Class FLMetier
FLMetier,FLCatch-method Class FLMetier
FLMetier,FLCatches-method Class FLMetier
FLMetier,FLQuant-method Class FLMetier
FLMetier,missing-method Class FLMetier
FLMetier-class Class FLMetier
FLMetier-methods Class FLMetier
FLMetiers Class FLMetiers
FLMetiers,ANY-method Class FLMetiers
FLMetiers,list-method Class FLMetiers
FLMetiers,missing-method Class FLMetiers
FLMetiers-class Class FLMetiers
FLMetiers-methods Class FLMetiers
FLModel Class FLModel for statistical models
FLModel,character-method Class FLModel for statistical models
FLModel,formula-method Class FLModel for statistical models
FLModel,function-method Class FLModel for statistical models
FLModel,missing-method Class FLModel for statistical models
FLModel-class Class FLModel for statistical models
FLModel-methods Class FLModel for statistical models
FLPar Class FLPar
FLPar,array-method Class FLPar
FLPar,FLPar-method Class FLPar
FLPar,missing-method Class FLPar
FLPar,vector-method Class FLPar
FLPar-class Class FLPar
FLPar-methods Class FLPar
FLQuant FLQuant class for numerical data
FLQuant,array-method FLQuant class for numerical data
FLQuant,FLQuant-method FLQuant class for numerical data
FLQuant,matrix-method FLQuant class for numerical data
FLQuant,missing-method FLQuant class for numerical data
FLQuant,vector-method FLQuant class for numerical data
FLQuant-class FLQuant class for numerical data
FLQuant-methods FLQuant class for numerical data
FLQuantPoint Class FLQuantPoint
FLQuantPoint,FLQuant-method Class FLQuantPoint
FLQuantPoint-accesors Method lowq
FLQuantPoint-class Class FLQuantPoint
FLQuantPoint-methods Class FLQuantPoint
FLQuants Class FLQuants
FLQuants,ANY-method Class FLQuants
FLQuants,FLQuants-method Class FLQuants
FLQuants,list-method Class FLQuants
FLQuants,missing-method Class FLQuants
FLQuants-class Class FLQuants
FLQuants-methods Class FLQuants
FLSR Class FLSR
FLSR,ANY-method Class FLSR
FLSR,missing-method Class FLSR
FLSR-class Class FLSR
FLSR-methods Class FLSR
FLStock Class FLStock
FLStock,FLQuant-method Class FLStock
FLStock,missing-method Class FLStock
FLStock-class Class FLStock
FLStock-methods Class FLStock
FLStocks Class FLStocks
FLStocks,ANY-method Class FLStocks
FLStocks,list-method Class FLStocks
FLStocks,missing-method Class FLStocks
FLStocks-class Class FLStocks
FLStocks-methods Class FLStocks
FLtest FLtest functions for running simple units tests
fmle Method fmle
fmle,ANY,missing-method Method fmle
fmle,FLModel,ANY-method Method fmle
fmle,FLModel,FLPar-method Method fmle
fmle,FLModel-method Method fmle

-- G --

gear Accesor and replacement methods for complex S4 classes
gear,ANY-method Accesor and replacement methods for complex S4 classes
gear,FLMetier-method Accesor and replacement methods for complex S4 classes
gear-methods Accesor and replacement methods for complex S4 classes
gear<- Accesor and replacement methods for complex S4 classes
gear<-,FLMetier,character-method Accesor and replacement methods for complex S4 classes
gear<--methods Accesor and replacement methods for complex S4 classes
geomean Stock-Recruitment models
getPlural FLCore-internal
gr Accesor and replacement methods for complex S4 classes
gr,FLModel-method Accesor and replacement methods for complex S4 classes
gr-methods Accesor and replacement methods for complex S4 classes
gr<- Accesor and replacement methods for complex S4 classes
gr<-,FLModel,function-method Accesor and replacement methods for complex S4 classes
gr<--methods Accesor and replacement methods for complex S4 classes

-- H --

harvest Accesor and replacement methods for complex S4 classes
harvest,FLBiol,missing-method Harvest calculations for FLBiol
harvest,FLBiol-method Harvest calculations for FLBiol
harvest,FLStock,missing-method Accesor and replacement methods for complex S4 classes
harvest-methods Accesor and replacement methods for complex S4 classes
harvest.spwn Accesor and replacement methods for complex S4 classes
harvest.spwn,FLStock-method Accesor and replacement methods for complex S4 classes
harvest.spwn-methods Accesor and replacement methods for complex S4 classes
harvest.spwn<- Accesor and replacement methods for complex S4 classes
harvest.spwn<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
harvest.spwn<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
harvest.spwn<--methods Accesor and replacement methods for complex S4 classes
harvest<- Accesor and replacement methods for complex S4 classes
harvest<-,FLStock,character-method Accesor and replacement methods for complex S4 classes
harvest<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
harvest<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
harvest<--methods Accesor and replacement methods for complex S4 classes
histogram,formula,FLComp-method Lattice plots
histogram,formula,FLPar-method Lattice plots
histogram,formula,FLQuant-method Lattice plots
histogram,formula,FLQuants-method Lattice plots

-- I --

index Accesor and replacement methods for complex S4 classes
index,FLIndex-method Accesor and replacement methods for complex S4 classes
index-methods Accesor and replacement methods for complex S4 classes
index.q Accesor and replacement methods for complex S4 classes
index.q,FLIndex-method Accesor and replacement methods for complex S4 classes
index.q-methods Accesor and replacement methods for complex S4 classes
index.q<- Accesor and replacement methods for complex S4 classes
index.q<-,FLIndex,FLQuant-method Accesor and replacement methods for complex S4 classes
index.q<-,FLIndex,numeric-method Accesor and replacement methods for complex S4 classes
index.q<--methods Accesor and replacement methods for complex S4 classes
index.var Accesor and replacement methods for complex S4 classes
index.var,FLIndex-method Accesor and replacement methods for complex S4 classes
index.var-methods Accesor and replacement methods for complex S4 classes
index.var<- Accesor and replacement methods for complex S4 classes
index.var<-,FLIndex,FLQuant-method Accesor and replacement methods for complex S4 classes
index.var<-,FLIndex,numeric-method Accesor and replacement methods for complex S4 classes
index.var<--methods Accesor and replacement methods for complex S4 classes
index<- Accesor and replacement methods for complex S4 classes
index<-,FLIndex,FLQuant-method Accesor and replacement methods for complex S4 classes
index<-,FLIndex,numeric-method Accesor and replacement methods for complex S4 classes
index<--methods Accesor and replacement methods for complex S4 classes
initial Accesor and replacement methods for complex S4 classes
initial,FLModel-method Accesor and replacement methods for complex S4 classes
initial-methods Accesor and replacement methods for complex S4 classes
initial<- Accesor and replacement methods for complex S4 classes
initial<-,FLModel,function-method Accesor and replacement methods for complex S4 classes
initial<--methods Accesor and replacement methods for complex S4 classes
is.FLBiol Methods to determine the class of a given object
is.FLBiols Methods to determine the class of a given object
is.FLBiols,ANY-method Methods to determine the class of a given object
is.FLBiols-methods Methods to determine the class of a given object
is.FLCatches Methods to determine the class of a given object
is.FLCatches,ANY-method Methods to determine the class of a given object
is.FLCatches-methods Methods to determine the class of a given object
is.FLFleets Methods to determine the class of a given object
is.FLFleets,ANY-method Methods to determine the class of a given object
is.FLFleets-methods Methods to determine the class of a given object
is.FLIndices Methods to determine the class of a given object
is.FLIndices,ANY-method Methods to determine the class of a given object
is.FLIndices-methods Methods to determine the class of a given object
is.FLMetiers Methods to determine the class of a given object
is.FLMetiers,ANY-method Methods to determine the class of a given object
is.FLMetiers-methods Methods to determine the class of a given object
is.FLQuant Methods to determine the class of a given object
is.FLQuants Methods to determine the class of a given object
is.FLQuants,ANY-method Methods to determine the class of a given object
is.FLQuants-methods Methods to determine the class of a given object
is.FLStock Methods to determine the class of a given object
is.FLStocks Methods to determine the class of a given object
is.FLStocks,ANY-method Methods to determine the class of a given object
is.FLStocks-methods Methods to determine the class of a given object
iter Select or modify iterations of an FLR object
iter,FLArray-method Select or modify iterations of an FLR object
iter,FLComp-method Select or modify iterations of an FLR object
iter,FLFleet-method Select or modify iterations of an FLR object
iter,FLMetier-method Select or modify iterations of an FLR object
iter,FLModel-method Select or modify iterations of an FLR object
iter,FLPar-method Select or modify iterations of an FLR object
iter,FLQuant,ANY-method Select or modify iterations of an FLR object
iter,FLQuants-method Select or modify iterations of an FLR object
iter,logLik-method Select or modify iterations of an FLR object
iter,vector-method Select or modify iterations of an FLR object
iter-methods Select or modify iterations of an FLR object
iter<- Select or modify iterations of an FLR object
iter<-,FLCohort,FLCohort-method Select or modify iterations of an FLR object
iter<-,FLComp,FLComp-method Select or modify iterations of an FLR object
iter<-,FLPar,FLPar-method Select or modify iterations of an FLR object
iter<-,FLPar,numeric-method Select or modify iterations of an FLR object
iter<-,FLQuant,FLQuant-method Select or modify iterations of an FLR object
iter<--methods Select or modify iterations of an FLR object
iterMeans Methods to compute sums, means and vars of FLQuant objects
iterMeans,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
iterMeans-methods Methods to compute sums, means and vars of FLQuant objects
iters Method iters
iters,FLQuant-method Method iters
iters-methods Method iters
iterVars Methods to compute sums, means and vars of FLQuant objects
iterVars,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
iterVars-methods Methods to compute sums, means and vars of FLQuant objects

-- J --

jacknife Jacknife resampling
jacknife,FLQuant-method Jacknife resampling
jacknife-methods Jacknife resampling

-- L --

landings Accesor and replacement methods for complex S4 classes
landings,FLCatch-method Accesor and replacement methods for the FLCatch class
landings,FLCatches-method Accesor and replacement methods for the FLCatch class
landings,FLFleet-method Accesor and replacement methods for the FLCatch class
landings,FLMetier-method Accesor and replacement methods for the FLCatch class
landings,FLMetiers-method Accesor and replacement methods for the FLCatch class
landings,FLStock-method Accesor and replacement methods for complex S4 classes
landings-methods Accesor and replacement methods for complex S4 classes
landings.n Accesor and replacement methods for complex S4 classes
landings.n,FLCatch-method Accesor and replacement methods for the FLCatch class
landings.n,FLCatches-method Accesor and replacement methods for the FLCatch class
landings.n,FLFleet-method Accesor and replacement methods for the FLCatch class
landings.n,FLIndex-method Accesor and replacement methods for complex S4 classes
landings.n,FLMetier-method Accesor and replacement methods for the FLCatch class
landings.n,FLMetiers-method Accesor and replacement methods for the FLCatch class
landings.n,FLStock-method Accesor and replacement methods for complex S4 classes
landings.n-methods Accesor and replacement methods for complex S4 classes
landings.n<- Accesor and replacement methods for complex S4 classes
landings.n<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.n<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.n<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.n<-,FLIndex,FLQuant-method Accesor and replacement methods for complex S4 classes
landings.n<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.n<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.n<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
landings.n<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
landings.n<--methods Accesor and replacement methods for complex S4 classes
landings.q Accesor and replacement methods for complex S4 classes
landings.q,FLCatch-method Accesor and replacement methods for the FLCatch class
landings.q,FLCatches-method Accesor and replacement methods for the FLCatch class
landings.q,FLFleet-method Accesor and replacement methods for the FLCatch class
landings.q,FLMetier-method Accesor and replacement methods for the FLCatch class
landings.q,FLMetiers-method Accesor and replacement methods for the FLCatch class
landings.q-methods Accesor and replacement methods for complex S4 classes
landings.q<- Accesor and replacement methods for complex S4 classes
landings.q<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.q<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.q<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.q<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.q<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.q<--methods Accesor and replacement methods for complex S4 classes
landings.sel Accesor and replacement methods for complex S4 classes
landings.sel,FLCatch-method Accesor and replacement methods for the FLCatch class
landings.sel,FLCatches-method Accesor and replacement methods for the FLCatch class
landings.sel,FLFleet-method Accesor and replacement methods for the FLCatch class
landings.sel,FLMetier-method Accesor and replacement methods for the FLCatch class
landings.sel,FLMetiers-method Accesor and replacement methods for the FLCatch class
landings.sel-methods Accesor and replacement methods for complex S4 classes
landings.sel<- Accesor and replacement methods for complex S4 classes
landings.sel<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.sel<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.sel<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.sel<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.sel<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.sel<--methods Accesor and replacement methods for complex S4 classes
landings.wt Accesor and replacement methods for complex S4 classes
landings.wt,FLCatch-method Accesor and replacement methods for the FLCatch class
landings.wt,FLCatches-method Accesor and replacement methods for the FLCatch class
landings.wt,FLFleet-method Accesor and replacement methods for the FLCatch class
landings.wt,FLIndex-method Accesor and replacement methods for complex S4 classes
landings.wt,FLMetier-method Accesor and replacement methods for the FLCatch class
landings.wt,FLMetiers-method Accesor and replacement methods for the FLCatch class
landings.wt,FLStock-method Accesor and replacement methods for complex S4 classes
landings.wt-methods Accesor and replacement methods for complex S4 classes
landings.wt<- Accesor and replacement methods for complex S4 classes
landings.wt<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.wt<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.wt<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.wt<-,FLIndex,FLQuant-method Accesor and replacement methods for complex S4 classes
landings.wt<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.wt<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
landings.wt<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
landings.wt<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
landings.wt<--methods Accesor and replacement methods for complex S4 classes
landings<- Accesor and replacement methods for complex S4 classes
landings<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
landings<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
landings<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
landings<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
landings<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
landings<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
landings<-,FLStock,FLQuants-method Accesor and replacement methods for complex S4 classes
landings<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
landings<--methods Accesor and replacement methods for complex S4 classes
lapply,FLlst,missing-method Method lapply
lapply,FLlst-method Method lapply
lattice-FLCore Lattice plots
leslie Method for calculating Leslie matrix dynamics of an FLBiol object
leslie,FLBiol-method Method for calculating Leslie matrix dynamics of an FLBiol object
leslie-methods Method for calculating Leslie matrix dynamics of an FLBiol object
logl Accesor and replacement methods for complex S4 classes
logl,FLModel-method Accesor and replacement methods for complex S4 classes
logl-methods Accesor and replacement methods for complex S4 classes
logl.ar1 Stock-Recruitment models
logl<- Accesor and replacement methods for complex S4 classes
logl<-,FLModel,function-method Accesor and replacement methods for complex S4 classes
logl<--methods Accesor and replacement methods for complex S4 classes
logLik,ANY-method Accesor and replacement methods for complex S4 classes
logLik,FLModel-method Accesor and replacement methods for complex S4 classes
logLik<- Accesor and replacement methods for complex S4 classes
logLik<-,FLModel,logLik-method Accesor and replacement methods for complex S4 classes
logLik<-,FLModel,numeric-method Accesor and replacement methods for complex S4 classes
logLik<--methods Accesor and replacement methods for complex S4 classes
lower Methods upper and lower
lower,FLModel-method Methods upper and lower
lower<- Methods upper and lower
lower<-,FLModel,numeric-method Methods upper and lower
lowess,FLSR,missing-method Method lowess
lowq Method lowq
lowq,FLQuantPoint-method Method lowq
lowq-methods Method lowq
lowq<- Method lowq
lowq<-,FLQuantPoint-method Method lowq
lowq<--methods Method lowq

-- M --

m Accesor and replacement methods for complex S4 classes
m,FLBiol-method Accesor and replacement methods for complex S4 classes
m,FLStock-method Accesor and replacement methods for complex S4 classes
m-methods Accesor and replacement methods for complex S4 classes
m.spwn Accesor and replacement methods for complex S4 classes
m.spwn,FLStock-method Accesor and replacement methods for complex S4 classes
m.spwn-methods Accesor and replacement methods for complex S4 classes
m.spwn<- Accesor and replacement methods for complex S4 classes
m.spwn<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
m.spwn<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
m.spwn<--methods Accesor and replacement methods for complex S4 classes
m<- Accesor and replacement methods for complex S4 classes
m<-,FLBiol,FLQuant-method Accesor and replacement methods for complex S4 classes
m<-,FLBiol,numeric-method Accesor and replacement methods for complex S4 classes
m<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
m<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
m<--methods Accesor and replacement methods for complex S4 classes
mat Accesor and replacement methods for complex S4 classes
mat,FLStock-method Accesor and replacement methods for complex S4 classes
mat-methods Accesor and replacement methods for complex S4 classes
mat<- Accesor and replacement methods for complex S4 classes
mat<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
mat<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
mat<--methods Accesor and replacement methods for complex S4 classes
mcf Method mcf
mcf,FLComp-method Method mcf
mcf,list-method Method mcf
mcf-methods Method mcf
mean,FLPar-method Method mean
mean,FLQuant-method Method mean
mean,FLQuantPoint-method Method lowq
mean.lifespan Method for calculating mean lifespan, given the natural mortality
mean.lifespan,FLBiol-method Method for calculating mean lifespan, given the natural mortality
mean.lifespan-methods Method for calculating mean lifespan, given the natural mortality
mean<- Method lowq
mean<-,FLQuantPoint-method Method lowq
mean<--methods Method lowq
median,FLPar,missing-method Method median
median,FLPar-method Method median
median,FLQuantPoint,missing-method Method lowq
median,FLQuantPoint-method Method lowq
median<- Method lowq
median<-,FLQuantPoint-method Method lowq
median<--methods Method lowq
mergeFLStock Merging FLStock objects
metier Method metier
metier,FLFleet,ANY-method Method metier
metier,FLFleet-method Method metier
metier-methods Method metier
metier<- Method metier
metier<-,FLFleet,ANY,FLMetier-method Method metier
metier<--methods Method metier
metiers Accesor and replacement methods for complex S4 classes
metiers,FLFleet-method Accesor and replacement methods for complex S4 classes
metiers-methods Accesor and replacement methods for complex S4 classes
metiers<- Accesor and replacement methods for complex S4 classes
metiers<-,FLFleet,FLMetiers-method Accesor and replacement methods for complex S4 classes
metiers<--methods Accesor and replacement methods for complex S4 classes
model Accesor and replacement methods for complex S4 classes
model,FLModel-method Accesor and replacement methods for complex S4 classes
model-methods Accesor and replacement methods for complex S4 classes
model.frame,FLComp-method Method model.frame
model.frame,FLlst-method Method model.frame
model<- Accesor and replacement methods for complex S4 classes
model<-,FLModel,character-method Accesor and replacement methods for complex S4 classes
model<-,FLModel,formula-method Accesor and replacement methods for complex S4 classes
model<-,FLModel,function-method Accesor and replacement methods for complex S4 classes
model<-,FLModel,list-method Accesor and replacement methods for complex S4 classes
model<--methods Accesor and replacement methods for complex S4 classes

-- N --

n Accesor and replacement methods for complex S4 classes
n,FLBiol-method Accesor and replacement methods for complex S4 classes
n-methods Accesor and replacement methods for complex S4 classes
n<- Accesor and replacement methods for complex S4 classes
n<-,FLBiol,FLQuant-method Accesor and replacement methods for complex S4 classes
n<-,FLBiol,numeric-method Accesor and replacement methods for complex S4 classes
n<--methods Accesor and replacement methods for complex S4 classes
name Accesor and replacement methods for complex S4 classes
name,FLBiol-method Accesor and replacement methods for complex S4 classes
name,FLCatch-method Accesor and replacement methods for complex S4 classes
name,FLFleet-method Accesor and replacement methods for complex S4 classes
name,FLIndex-method Accesor and replacement methods for complex S4 classes
name,FLMetier-method Accesor and replacement methods for complex S4 classes
name,FLModel-method Accesor and replacement methods for complex S4 classes
name,FLStock-method Accesor and replacement methods for complex S4 classes
name-methods Accesor and replacement methods for complex S4 classes
name<- Accesor and replacement methods for complex S4 classes
name<-,FLBiol,character-method Accesor and replacement methods for complex S4 classes
name<-,FLCatch,character-method Accesor and replacement methods for complex S4 classes
name<-,FLFleet,character-method Accesor and replacement methods for complex S4 classes
name<-,FLIndex,character-method Accesor and replacement methods for complex S4 classes
name<-,FLMetier,character-method Accesor and replacement methods for complex S4 classes
name<-,FLModel,character-method Accesor and replacement methods for complex S4 classes
name<-,FLStock,character-method Accesor and replacement methods for complex S4 classes
name<--methods Accesor and replacement methods for complex S4 classes
names,FLArray-method Method names
names,FLlst-method Method names
names,FLPar-method Method names
names<-,FLPar,character-method Method names
nls,FLModel,missing,missing,missing,missing,missing,missing,missing,missing,missing,missing,missing-method Method nls
nls,FLModel,missing-method Method nls
nls-FLCore Method nls
nsher FLCore datasets

-- P --

params Accesor and replacement methods for complex S4 classes
params,FLModel-method Accesor and replacement methods for complex S4 classes
params-methods Accesor and replacement methods for complex S4 classes
params<- Accesor and replacement methods for complex S4 classes
params<-,FLModel,FLPar-method Accesor and replacement methods for complex S4 classes
params<--methods Accesor and replacement methods for complex S4 classes
ple4 FLCore datasets
ple4.biol FLCore datasets
ple4.index FLCore datasets
ple4.indices FLCore datasets
ple4sex FLCore datasets
plot,FLBiol,missing-method Method plot
plot,FLCohort,missing-method Method plot
plot,FLIndex,missing-method Method plot
plot,FLIndices,missing-method Method plot
plot,FLPar,missing-method Method plot
plot,FLQuant,missing-method Method plot
plot,FLQuantPoint,missing-method Method plot
plot,FLSR,missing-method Method plot
plot,FLStock,missing-method Method plot
plot,FLStocks,FLPar-method Method plot
plot,FLStocks,missing-method Method plot
predict,FLModel-method Method predict
price Accesor and replacement methods for complex S4 classes
price,FLCatch-method Accesor and replacement methods for the FLCatch class
price,FLCatches-method Accesor and replacement methods for the FLCatch class
price,FLFleet-method Accesor and replacement methods for the FLCatch class
price,FLMetier-method Accesor and replacement methods for the FLCatch class
price,FLMetiers-method Accesor and replacement methods for the FLCatch class
price-methods Accesor and replacement methods for complex S4 classes
price<- Accesor and replacement methods for complex S4 classes
price<-,FLCatch,FLQuant-method Accesor and replacement methods for the FLCatch class
price<-,FLCatches,FLQuant-method Accesor and replacement methods for the FLCatch class
price<-,FLFleet,FLQuant-method Accesor and replacement methods for the FLCatch class
price<-,FLMetier,FLQuant-method Accesor and replacement methods for the FLCatch class
price<-,FLMetiers,FLQuant-method Accesor and replacement methods for the FLCatch class
price<--methods Accesor and replacement methods for complex S4 classes
print,FLQuant-method Method print
propagate Extend an FLQuant along the iter dimension
propagate,FLCohort-method Extend an FLQuant along the iter dimension
propagate,FLComp-method Extend an FLQuant along the iter dimension
propagate,FLFleet-method Extend an FLQuant along the iter dimension
propagate,FLMetier-method Extend an FLQuant along the iter dimension
propagate,FLPar-method Extend an FLQuant along the iter dimension
propagate,FLQuant-method Extend an FLQuant along the iter dimension
propagate-methods Extend an FLQuant along the iter dimension
pv Population variability
pv,FLQuant-method Population variability
pv-methods Population variability

-- Q --

qapply Method qapply
qapply,FLComp,function-method Method qapply
qapply-methods Method qapply
quant Method quant
quant,FLArray-method Method quant
quant-methods Method quant
quant<- Method quant
quant<-,FLArray,character-method Method quant
quant<-,FLArray,missing-method Method quant
quant<-,FLArray-method Method quant
quant<--methods Method quant
quantile,FLQuant-method Method quantile
quantile,FLQuantPoint-method Method quantile
quantMeans Methods to compute sums, means and vars of FLQuant objects
quantMeans,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
quantMeans-methods Methods to compute sums, means and vars of FLQuant objects
quantSums Methods to compute sums, means and vars of FLQuant objects
quantSums,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
quantSums-methods Methods to compute sums, means and vars of FLQuant objects
quantTotals Method quantTotals
quantTotals,FLQuant-method Method quantTotals
quantTotals-methods Method quantTotals
quantVars Methods to compute sums, means and vars of FLQuant objects
quantVars,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
quantVars-methods Methods to compute sums, means and vars of FLQuant objects

-- R --

r Intrinsic rate of increase from an FLBiol object
r,FLBiol-method Intrinsic rate of increase from an FLBiol object
r-methods Intrinsic rate of increase from an FLBiol object
range,FLComp,missing-method Method range
range,FLComp-method Method range
range,FLlst-method Method range
range-methods Method range
range<- Method range
range<-,FLComp-method Method range
range<--methods Method range
read.FLIndex Input/Output of FLR objects
read.FLIndices Input/Output of FLR objects
read.FLStock Input/Output of FLR objects
readFLIndex Input/Output of FLR objects
readFLIndices Input/Output of FLR objects
readFLStock Input/Output of FLR objects
readVPAFile Input/Output of FLR objects
rec Accesor and replacement methods for complex S4 classes
rec,FLBiol-method Accesor and replacement methods for complex S4 classes
rec,FLSR-method Accesor and replacement methods for complex S4 classes
rec,FLStock-method Accesor and replacement methods for complex S4 classes
rec-methods Accesor and replacement methods for complex S4 classes
rec<- Accesor and replacement methods for complex S4 classes
rec<-,FLSR,FLQuant-method Accesor and replacement methods for complex S4 classes
rec<-,FLSR,numeric-method Accesor and replacement methods for complex S4 classes
rec<--methods Accesor and replacement methods for complex S4 classes
residuals,ANY-method Accesor and replacement methods for complex S4 classes
residuals,FLModel-method Accesor and replacement methods for complex S4 classes
residuals<- Accesor and replacement methods for complex S4 classes
residuals<-,FLModel,FLArray-method Accesor and replacement methods for complex S4 classes
residuals<-,FLModel,numeric-method Accesor and replacement methods for complex S4 classes
residuals<--methods Accesor and replacement methods for complex S4 classes
revenue Method revenue
revenue,FLCatch-method Method revenue
revenue,FLCatches-method Method revenue
revenue,FLFleet-method Method revenue
revenue,FLMetier-method Method revenue
revenue,FLMetiers-method Method revenue
revenue-methods Method revenue
rgamma,numeric,FLQuantPoint,missing,missing-method Method rgamma
ricker Stock-Recruitment models
ricker.ar1 Stock-Recruitment models
ricker.c.a Stock-Recruitment models
ricker.c.b Stock-Recruitment models
ricker.d Stock-Recruitment models
Ricker.SV Stock-Recruitment models
ricker.sv Stock-Recruitment models
rlnorm,numeric,FLQuant,FLQuant-method Method rlnorm
rlnorm,numeric,FLQuant,missing-method Method rlnorm
rlnorm,numeric,FLQuant,numeric-method Method rlnorm
rlnorm,numeric,FLQuantPoint,missing-method Method rlnorm
rlnorm,numeric,missing,FLQuant-method Method rlnorm
rlnorm,numeric,numeric,FLQuant-method Method rlnorm
rnorm,numeric,FLQuant,FLQuant-method Method rnorm
rnorm,numeric,FLQuant,missing-method Method rnorm
rnorm,numeric,FLQuant,numeric-method Method rnorm
rnorm,numeric,FLQuantPoint,missing-method Method rnorm
rnorm,numeric,missing,FLQuant-method Method rnorm
rnorm,numeric,numeric,FLQuant-method Method rnorm
rpois,numeric,FLQuant-method Method rpois

-- S --

sd,FLModel,missing-method Standard deviation of an FLModel object
seasonMeans Methods to compute sums, means and vars of FLQuant objects
seasonMeans,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
seasonMeans-methods Methods to compute sums, means and vars of FLQuant objects
seasonSums Methods to compute sums, means and vars of FLQuant objects
seasonSums,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
seasonSums-methods Methods to compute sums, means and vars of FLQuant objects
seasonVars Methods to compute sums, means and vars of FLQuant objects
seasonVars,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
seasonVars-methods Methods to compute sums, means and vars of FLQuant objects
segreg Stock-Recruitment models
sel.pattern Accesor and replacement methods for complex S4 classes
sel.pattern,FLIndex-method Accesor and replacement methods for complex S4 classes
sel.pattern-methods Accesor and replacement methods for complex S4 classes
sel.pattern<- Accesor and replacement methods for complex S4 classes
sel.pattern<-,FLIndex,FLQuant-method Accesor and replacement methods for complex S4 classes
sel.pattern<-,FLIndex,numeric-method Accesor and replacement methods for complex S4 classes
sel.pattern<--methods Accesor and replacement methods for complex S4 classes
setCon FLtest functions for running simple units tests
setPlusGroup Method setPlusGroup
setPlusGroup,FLBiol,numeric-method Method setPlusGroup
setPlusGroup,FLCatch,numeric-method Method setPlusGroup
setPlusGroup,FLQuant,numeric-method Method setPlusGroup
setPlusGroup,FLStock,numeric-method Method setPlusGroup
setPlusGroup-methods Method setPlusGroup
shepherd Stock-Recruitment models
shepherd.ar1 Stock-Recruitment models
shepherd.d Stock-Recruitment models
shepherd.d.ar1 Stock-Recruitment models
shepherd.ndc Stock-Recruitment models
shepherd.ndc.ar1 Stock-Recruitment models
show,FLArray-method Method show
show,FLPar-method Method show
show,FLQuant-method Method show
show,FLQuantPoint-method Method show
show,FLQuants-method Method show
sop Calculates the sum of products correction
splom,FLPar,missing-method Method splom
spp Accesor and replacement methods for complex S4 classes
spp,FLCatch-method Accesor and replacement methods for complex S4 classes
spp,FLCatches-method Accesor and replacement methods for complex S4 classes
spp,FLFleet-method Accesor and replacement methods for complex S4 classes
spp,FLFleets-method Accesor and replacement methods for complex S4 classes
spp,FLMetier-method Accesor and replacement methods for complex S4 classes
spp,FLMetiers-method Accesor and replacement methods for complex S4 classes
spp-methods Accesor and replacement methods for complex S4 classes
spp<-,FLCatch,character-method Accesor and replacement methods for complex S4 classes
spp<--methods Accesor and replacement methods for complex S4 classes
spr0 Method spr0
spr0,FLQuant,FLQuant,FLQuant-method Method spr0
spr0,FLSR,missing,FLQuant-method Method spr0
spr0,FLStock,missing,missing-method Method spr0
spr0-methods Method spr0
spwn Accesor and replacement methods for complex S4 classes
spwn,FLBiol-method Accesor and replacement methods for complex S4 classes
spwn-methods Accesor and replacement methods for complex S4 classes
spwn<- Accesor and replacement methods for complex S4 classes
spwn<-,FLBiol,FLQuant-method Accesor and replacement methods for complex S4 classes
spwn<-,FLBiol,numeric-method Accesor and replacement methods for complex S4 classes
spwn<--methods Accesor and replacement methods for complex S4 classes
sr Stock-recruitment model function
SRModelName Convenience function to identify an SR model by its formula
SRModels Stock-Recruitment models
ssb Method ssb
ssb,FLBiol-method Method ssb
ssb,FLSR-method Accesor and replacement methods for complex S4 classes
ssb,FLStock-method Method ssb
ssb-methods Method ssb
ssb<- Accesor and replacement methods for complex S4 classes
ssb<-,FLSR,FLQuant-method Accesor and replacement methods for complex S4 classes
ssb<-,FLSR,numeric-method Accesor and replacement methods for complex S4 classes
ssb<--methods Accesor and replacement methods for complex S4 classes
ssbpurec Method ssbpurec
ssbpurec,FLStock-method Method ssbpurec
ssbpurec-methods Method ssbpurec
ssn Method ssn
ssn,FLBiol-method Method ssn
ssn-methods Method ssn
startTest FLtest functions for running simple units tests
stock Accesor and replacement methods for complex S4 classes
stock,FLStock-method Accesor and replacement methods for complex S4 classes
stock-methods Accesor and replacement methods for complex S4 classes
stock.n Accesor and replacement methods for complex S4 classes
stock.n,FLStock-method Accesor and replacement methods for complex S4 classes
stock.n-methods Accesor and replacement methods for complex S4 classes
stock.n<- Accesor and replacement methods for complex S4 classes
stock.n<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
stock.n<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
stock.n<--methods Accesor and replacement methods for complex S4 classes
stock.wt Accesor and replacement methods for complex S4 classes
stock.wt,FLStock-method Accesor and replacement methods for complex S4 classes
stock.wt-methods Accesor and replacement methods for complex S4 classes
stock.wt<- Accesor and replacement methods for complex S4 classes
stock.wt<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
stock.wt<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
stock.wt<--methods Accesor and replacement methods for complex S4 classes
stock<- Accesor and replacement methods for complex S4 classes
stock<-,FLStock,FLQuant-method Accesor and replacement methods for complex S4 classes
stock<-,FLStock,numeric-method Accesor and replacement methods for complex S4 classes
stock<--methods Accesor and replacement methods for complex S4 classes
stripplot,formula,FLComp-method Lattice plots
stripplot,formula,FLQuant-method Lattice plots
summary,FLArray-method Method summary
summary,FLComp-method Method summary
summary,FLFleet-method Method summary
summary,FLlst-method Method summary
summary,FLMetier-method Method summary
summary,FLModel-method Method summary
summary,FLPar-method Method summary
summary,FLQuant-method Method summary
summary,FLQuantPoint-method Method summary
summary,FLQuants-method Method summary
survprob Calculating survival probabilties given mortality in the FLBiol object
survprob,FLBiol-method Calculating survival probabilties given mortality in the FLBiol object
survprob-methods Calculating survival probabilties given mortality in the FLBiol object
sv2ab Stock-Recruitment models
sweep,FLArray-method Sweep out FLQuant Summaries
sweep,FLQuant-method Sweep out FLQuant Summaries

-- T --

tagTest FLtest functions for running simple units tests
transform,FLComp-method Transform elements of a complex FLR object
trim Trim FLR objects using named dimensions
trim,FLArray-method Trim FLR objects using named dimensions
trim,FLCatch-method Trim FLR objects using named dimensions
trim,FLCohort-method Trim FLR objects using named dimensions
trim,FLComp-method Trim FLR objects using named dimensions
trim,FLFleet-method Trim FLR objects using named dimensions
trim,FLIndex-method Trim FLR objects using named dimensions
trim,FLMetier-method Trim FLR objects using named dimensions
trim,FLQuant-method Trim FLR objects using named dimensions
trim,FLStock-method Trim FLR objects using named dimensions
trim-methods Trim FLR objects using named dimensions
type Accesor and replacement methods for complex S4 classes
type,FLIndex-method Accesor and replacement methods for complex S4 classes
type-methods Accesor and replacement methods for complex S4 classes
type<- Accesor and replacement methods for complex S4 classes
type<-,FLIndex,character-method Accesor and replacement methods for complex S4 classes
type<--methods Accesor and replacement methods for complex S4 classes

-- U --

unitMeans Methods to compute sums, means and vars of FLQuant objects
unitMeans,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
unitMeans-methods Methods to compute sums, means and vars of FLQuant objects
units,FLArray-method units attribute for FLQuant objects
units,FLCohort-method units attribute for FLQuant objects
units,FLComp-method units attribute for FLQuant objects
units,FLPar-method units attribute for FLQuant objects
units<-,FLArray,character-method units attribute for FLQuant objects
units<-,FLCohort,character-method units attribute for FLQuant objects
units<-,FLComp,list-method units attribute for FLQuant objects
units<-,FLPar,character-method units attribute for FLQuant objects
unitSums Methods to compute sums, means and vars of FLQuant objects
unitSums,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
unitSums-methods Methods to compute sums, means and vars of FLQuant objects
unitVars Methods to compute sums, means and vars of FLQuant objects
unitVars,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
unitVars-methods Methods to compute sums, means and vars of FLQuant objects
update,FLModel-method Method update
upper Methods upper and lower
upper,FLModel-method Methods upper and lower
upper<- Methods upper and lower
upper<-,FLModel,numeric-method Methods upper and lower
uppq Method lowq
uppq,FLQuantPoint-method Method lowq
uppq-methods Method lowq
uppq<- Method lowq
uppq<-,FLQuantPoint-method Method lowq
uppq<--methods Method lowq

-- V --

var,FLPar,missing,missing,missing-method Variance of an FLPar
var,FLPar-method Variance of an FLPar
var,FLQuantPoint,missing,missing,missing-method Method lowq
var,FLQuantPoint-method Method lowq
var<- Method lowq
var<-,FLQuantPoint-method Method lowq
var<--methods Method lowq
vcost Accesor and replacement methods for complex S4 classes
vcost,FLFleet-method Accesor and replacement methods for complex S4 classes
vcost,FLMetier-method Accesor and replacement methods for complex S4 classes
vcost,FLMetiers-method Accesor and replacement methods for complex S4 classes
vcost-methods Accesor and replacement methods for complex S4 classes
vcost<- Accesor and replacement methods for complex S4 classes
vcost<-,FLMetier,FLQuant-method Accesor and replacement methods for complex S4 classes
vcost<-,FLMetier,numeric-method Accesor and replacement methods for complex S4 classes
vcost<--methods Accesor and replacement methods for complex S4 classes
vcov,ANY-method Accesor and replacement methods for complex S4 classes
vcov,FLModel-method Accesor and replacement methods for complex S4 classes
vcov<- Accesor and replacement methods for complex S4 classes
vcov<-,FLModel,array-method Accesor and replacement methods for complex S4 classes
vcov<--methods Accesor and replacement methods for complex S4 classes

-- W --

window,FLComp-method Extract time (year) windows of an FLR object
window,FLFleet-method Extract time (year) windows of an FLR object
window,FLlst-method Extract time (year) windows of an FLR object
window,FLQuant-method Extract time (year) windows of an FLR object
writeFLStock Input/Output of FLR objects
wt Accesor and replacement methods for complex S4 classes
wt,FLBiol-method Accesor and replacement methods for complex S4 classes
wt-methods Accesor and replacement methods for complex S4 classes
wt<- Accesor and replacement methods for complex S4 classes
wt<-,FLBiol,FLQuant-method Accesor and replacement methods for complex S4 classes
wt<-,FLBiol,numeric-method Accesor and replacement methods for complex S4 classes
wt<--methods Accesor and replacement methods for complex S4 classes

-- X --

xyplot,formula,FLCohort-method Lattice plots
xyplot,formula,FLComp-method Lattice plots
xyplot,formula,FLQuant-method Lattice plots
xyplot,formula,FLQuants-method Lattice plots

-- Y --

yearMeans Methods to compute sums, means and vars of FLQuant objects
yearMeans,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
yearMeans-methods Methods to compute sums, means and vars of FLQuant objects
yearSums Methods to compute sums, means and vars of FLQuant objects
yearSums,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
yearSums-methods Methods to compute sums, means and vars of FLQuant objects
yearTotals Method quantTotals
yearTotals,FLQuant-method Method quantTotals
yearTotals-methods Method quantTotals
yearVars Methods to compute sums, means and vars of FLQuant objects
yearVars,FLQuant-method Methods to compute sums, means and vars of FLQuant objects
yearVars-methods Methods to compute sums, means and vars of FLQuant objects

-- misc --

[,FLArray,ANY,ANY-method Extract or Replace Parts of an FLR Object
[,FLArray,array,ANY-method Extract or Replace Parts of an FLR Object
[,FLCatch,ANY,ANY-method Extract or Replace Parts of an FLR Object
[,FLCohort,ANY,ANY-method Extract or Replace Parts of an FLR Object
[,FLComp,ANY,ANY-method Extract or Replace Parts of an FLR Object
[,FLFleet,ANY,ANY-method Extract or Replace Parts of an FLR Object
[,FLFleet,ANY,missing-method Extract or Replace Parts of an FLR Object
[,FLIndex,ANY,ANY-method Extract or Replace Parts of an FLR Object
[,FLlst,ANY,missing-method Extract or Replace Parts of an FLR Object
[,FLMetier,ANY,missing-method Extract or Replace Parts of an FLR Object
[,FLPar,ANY,ANY-method Extract or Replace Parts of an FLR Object
[,FLStock,ANY,ANY-method Extract or Replace Parts of an FLR Object
[<-,FLArray,ANY,ANY,ANY-method Extract or Replace Parts of an FLR Object
[<-,FLCatch,ANY,ANY,FLCatch-method Extract or Replace Parts of an FLR Object
[<-,FLComp,ANY,ANY,ANY-method Extract or Replace Parts of an FLR Object
[<-,FLlst,ANY,missing,ANY-method Extract or Replace Parts of an FLR Object
[<-,FLPar,ANY,ANY,ANY-method Extract or Replace Parts of an FLR Object
[<-,FLStock,ANY,ANY,FLStock-method Extract or Replace Parts of an FLR Object
[[,FLFleet,ANY,missing-method Extract or Replace Parts of an FLR Object
[[,FLMetier,ANY,missing-method Extract or Replace Parts of an FLR Object
[[<-,FLlst,ANY,missing-method Extract or Replace Parts of an FLR Object