INFO [main] (IsisFish.java:125) main - Starting Isis-Fish 4.1.1.1 with args : [] INFO [main] (IsisFish.java:126) main - Date: 13/09/12 17:10 INFO [main] (IsisFish.java:127) main - Java version: 1.6.0_20-b20, OpenJDK 64-Bit Server VM INFO [main] (IsisFish.java:128) main - System arch: amd64 INFO [main] (IsisFish.java:129) main - R_HOME: /usr/lib64/R, R.type: jni INFO [main] (IsisFish.java:130) main - PATH: /usr/local/sbin:/usr/sbin:/sbin:/usr/local/sbin:/usr/sbin:/sbin:/usr/local/bin:/usr/bin:/bin:/home3/nantes/perso/smahevas/bin:/home3/nantes/perso/smahevas/bin INFO [main] (IsisFish.java:330) initVCS - Check state of local repository: /media/disk_externe/ISIS/isis-fish-4/isis-database INFO [main] (VCSSVN.java:143) getSVNManager - Try to connect to http://svn.forge.codelutin.com/svn/isis-fish-community INFO [main] (VCSSVN.java:231) isConnected - Connexion au serveur disponible, passage en mode connect�� : http://svn.forge.codelutin.com/svn/isis-fish-community INFO [main] (IsisFish.java:159) main - after init done in 1.939. INFO [main] (SimulationExecutor.java:78) - SimulationExecutor started with 6 thread for dans un sous processus INFO [main] (SimulationExecutor.java:78) - SimulationExecutor started with 1 thread for sur le serveur Caparmor INFO [main] (SimulationExecutor.java:78) - SimulationExecutor started with 1 thread for dans le m��me processus INFO [main] (IsisTray.java:117) getInstance - Use system tray: fr.ifremer.isisfish.IsisTray$AWTSystemTray /media/disk_externe/ISIS/isis-fish-4/isis-community-database/rules/Duplicated_TailleMin.java:60: class TailleMin is public, should be declared in a file named TailleMin.java public class TailleMin extends AbstractRule { ^ 1 error INFO [main] (CompileHelper.java:109) loadClass - Can't load class: rules.Duplicated_TailleMin java.lang.ClassNotFoundException: rules.Duplicated_TailleMin at java.net.URLClassLoader$1.run(URLClassLoader.java:217) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:205) at java.lang.ClassLoader.loadClass(ClassLoader.java:321) at java.lang.ClassLoader.loadClass(ClassLoader.java:266) at fr.ifremer.isisfish.util.CompileHelper.loadClass(CompileHelper.java:107) at fr.ifremer.isisfish.datastore.JavaSourceStorage.getCodeClass(JavaSourceStorage.java:156) at fr.ifremer.isisfish.datastore.JavaSourceStorage.getNewInstance(JavaSourceStorage.java:171) at fr.ifremer.isisfish.datastore.RuleStorage.getNewRuleInstance(RuleStorage.java:166) at fr.ifremer.isisfish.ui.models.rule.RuleNamesListRenderer.getListCellRendererComponent(RuleNamesListRenderer.java:86) at javax.swing.plaf.basic.BasicListUI.updateLayoutState(BasicListUI.java:1360) at javax.swing.plaf.basic.BasicListUI.maybeUpdateLayoutState(BasicListUI.java:1310) at javax.swing.plaf.basic.BasicListUI.getPreferredSize(BasicListUI.java:577) at javax.swing.JComponent.getPreferredSize(JComponent.java:1634) at javax.swing.JList.getPreferredScrollableViewportSize(JList.java:2399) at javax.swing.ViewportLayout.preferredLayoutSize(ViewportLayout.java:92) at java.awt.Container.preferredSize(Container.java:1665) at java.awt.Container.getPreferredSize(Container.java:1650) at javax.swing.JComponent.getPreferredSize(JComponent.java:1636) at javax.swing.ScrollPaneLayout.preferredLayoutSize(ScrollPaneLayout.java:492) at java.awt.Container.preferredSize(Container.java:1665) at java.awt.Container.getPreferredSize(Container.java:1650) at javax.swing.JComponent.getPreferredSize(JComponent.java:1636) at java.awt.GridBagLayout.GetLayoutInfo(GridBagLayout.java:1109) at java.awt.GridBagLayout.getLayoutInfo(GridBagLayout.java:910) at java.awt.GridBagLayout.preferredLayoutSize(GridBagLayout.java:730) at java.awt.Container.preferredSize(Container.java:1665) at java.awt.Container.getPreferredSize(Container.java:1650) at javax.swing.JComponent.getPreferredSize(JComponent.java:1636) at java.awt.GridBagLayout.GetLayoutInfo(GridBagLayout.java:1109) at java.awt.GridBagLayout.getLayoutInfo(GridBagLayout.java:910) at java.awt.GridBagLayout.preferredLayoutSize(GridBagLayout.java:730) at java.awt.Container.preferredSize(Container.java:1665) at java.awt.Container.getPreferredSize(Container.java:1650) at javax.swing.JComponent.getPreferredSize(JComponent.java:1636) at javax.swing.plaf.basic.BasicTabbedPaneUI$TabbedPaneLayout.calculateSize(BasicTabbedPaneUI.java:2304) at javax.swing.plaf.basic.BasicTabbedPaneUI$TabbedPaneLayout.preferredLayoutSize(BasicTabbedPaneUI.java:2278) at java.awt.Container.preferredSize(Container.java:1665) at java.awt.Container.getPreferredSize(Container.java:1650) at javax.swing.JComponent.getPreferredSize(JComponent.java:1636) at java.awt.GridBagLayout.GetLayoutInfo(GridBagLayout.java:1109) at java.awt.GridBagLayout.getLayoutInfo(GridBagLayout.java:910) at java.awt.GridBagLayout.preferredLayoutSize(GridBagLayout.java:730) at java.awt.Container.preferredSize(Container.java:1665) at java.awt.Container.getPreferredSize(Container.java:1650) at javax.swing.JComponent.getPreferredSize(JComponent.java:1636) at java.awt.GridBagLayout.GetLayoutInfo(GridBagLayout.java:1109) at java.awt.GridBagLayout.getLayoutInfo(GridBagLayout.java:910) at java.awt.GridBagLayout.ArrangeGrid(GridBagLayout.java:2065) at java.awt.GridBagLayout.arrangeGrid(GridBagLayout.java:2025) at java.awt.GridBagLayout.layoutContainer(GridBagLayout.java:806) at java.awt.Container.layout(Container.java:1481) at java.awt.Container.doLayout(Container.java:1470) at java.awt.Container.validateTree(Container.java:1568) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validate(Container.java:1540) at java.awt.Window.show(Window.java:861) at java.awt.Component.show(Component.java:1496) at java.awt.Component.setVisible(Component.java:1448) at java.awt.Window.setVisible(Window.java:842) at fr.ifremer.isisfish.IsisFish.launchUI(IsisFish.java:713) at fr.ifremer.isisfish.IsisFish.main(IsisFish.java:165) /media/disk_externe/ISIS/isis-fish-4/isis-database/simulationplans/calibrationCamille.java:342: warning: [deprecation] writeString(java.io.File,java.lang.String) in org.nuiton.util.FileUtil has been deprecated org.nuiton.util.FileUtil.writeString(exportHistoric, exportHisto); ^ Note: /media/disk_externe/ISIS/isis-fish-4/isis-database/simulationplans/calibrationCamille.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning /media/disk_externe/ISIS/isis-fish-4/isis-community-database/rules/Duplicated_TailleMin.java:60: class TailleMin is public, should be declared in a file named TailleMin.java public class TailleMin extends AbstractRule { ^ 1 error INFO [main] (CompileHelper.java:109) loadClass - Can't load class: rules.Duplicated_TailleMin java.lang.ClassNotFoundException: rules.Duplicated_TailleMin at java.net.URLClassLoader$1.run(URLClassLoader.java:217) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:205) at java.lang.ClassLoader.loadClass(ClassLoader.java:321) at java.lang.ClassLoader.loadClass(ClassLoader.java:266) at fr.ifremer.isisfish.util.CompileHelper.loadClass(CompileHelper.java:107) at fr.ifremer.isisfish.datastore.JavaSourceStorage.getCodeClass(JavaSourceStorage.java:156) at fr.ifremer.isisfish.datastore.JavaSourceStorage.getNewInstance(JavaSourceStorage.java:171) at fr.ifremer.isisfish.datastore.RuleStorage.getNewRuleInstance(RuleStorage.java:166) at fr.ifremer.isisfish.ui.models.rule.RuleNamesListRenderer.getListCellRendererComponent(RuleNamesListRenderer.java:86) at javax.swing.plaf.basic.BasicListUI.updateLayoutState(BasicListUI.java:1360) at javax.swing.plaf.basic.BasicListUI.maybeUpdateLayoutState(BasicListUI.java:1310) at javax.swing.plaf.basic.BasicListUI.getPreferredSize(BasicListUI.java:577) at javax.swing.JComponent.getPreferredSize(JComponent.java:1634) at javax.swing.JList.getPreferredScrollableViewportSize(JList.java:2399) at javax.swing.ViewportLayout.preferredLayoutSize(ViewportLayout.java:92) at java.awt.Container.preferredSize(Container.java:1665) at java.awt.Container.getPreferredSize(Container.java:1650) at javax.swing.JComponent.getPreferredSize(JComponent.java:1636) at javax.swing.ScrollPaneLayout.preferredLayoutSize(ScrollPaneLayout.java:492) at java.awt.Container.preferredSize(Container.java:1665) at java.awt.Container.getPreferredSize(Container.java:1650) at javax.swing.JComponent.getPreferredSize(JComponent.java:1636) at java.awt.GridBagLayout.GetLayoutInfo(GridBagLayout.java:1109) at java.awt.GridBagLayout.getLayoutInfo(GridBagLayout.java:910) at java.awt.GridBagLayout.preferredLayoutSize(GridBagLayout.java:730) at java.awt.Container.preferredSize(Container.java:1665) at java.awt.Container.getPreferredSize(Container.java:1650) at javax.swing.JComponent.getPreferredSize(JComponent.java:1636) at java.awt.GridBagLayout.GetLayoutInfo(GridBagLayout.java:1109) at java.awt.GridBagLayout.getLayoutInfo(GridBagLayout.java:910) at java.awt.GridBagLayout.preferredLayoutSize(GridBagLayout.java:730) at java.awt.Container.preferredSize(Container.java:1665) at java.awt.Container.getPreferredSize(Container.java:1650) at javax.swing.JComponent.getPreferredSize(JComponent.java:1636) at javax.swing.plaf.basic.BasicTabbedPaneUI$TabbedPaneLayout.calculateSize(BasicTabbedPaneUI.java:2304) at javax.swing.plaf.basic.BasicTabbedPaneUI$TabbedPaneLayout.preferredLayoutSize(BasicTabbedPaneUI.java:2278) at java.awt.Container.preferredSize(Container.java:1665) at java.awt.Container.getPreferredSize(Container.java:1650) at javax.swing.JComponent.getPreferredSize(JComponent.java:1636) at java.awt.GridBagLayout.GetLayoutInfo(GridBagLayout.java:1109) at java.awt.GridBagLayout.getLayoutInfo(GridBagLayout.java:910) at java.awt.GridBagLayout.preferredLayoutSize(GridBagLayout.java:730) at java.awt.Container.preferredSize(Container.java:1665) at java.awt.Container.getPreferredSize(Container.java:1650) at javax.swing.JComponent.getPreferredSize(JComponent.java:1636) at java.awt.GridBagLayout.GetLayoutInfo(GridBagLayout.java:1109) at java.awt.GridBagLayout.getLayoutInfo(GridBagLayout.java:910) at java.awt.GridBagLayout.ArrangeGrid(GridBagLayout.java:2065) at java.awt.GridBagLayout.arrangeGrid(GridBagLayout.java:2025) at java.awt.GridBagLayout.layoutContainer(GridBagLayout.java:806) at java.awt.Container.layout(Container.java:1481) at java.awt.Container.doLayout(Container.java:1470) at java.awt.Container.validateTree(Container.java:1568) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validateTree(Container.java:1575) at java.awt.Container.validate(Container.java:1540) at java.awt.Window.show(Window.java:861) at java.awt.Component.show(Component.java:1496) at java.awt.Component.setVisible(Component.java:1448) at java.awt.Window.setVisible(Window.java:842) at fr.ifremer.isisfish.IsisFish.launchUI(IsisFish.java:713) at fr.ifremer.isisfish.IsisFish.main(IsisFish.java:165) INFO [Thread-8] (CronService.java:84) run - Starting 1 registered services INFO [AWT-EventQueue-0] (SimulationStorage.java:515) getSimulation - Try to open simulation sim_planCam2RecruLang_2012-09-11-14-35_0(/media/disk_externe/ISIS/isis-fish-4/isis-database/simulations/sim_planCam2RecruLang_2012-09-11-14-35_0) INFO [AWT-EventQueue-0] (RegionStorage.java:238) getRegion - Try to open region Cam2(/media/disk_externe/ISIS/isis-fish-4/isis-database/regions/Cam2) INFO [AWT-EventQueue-0] (SimulAction.java:311) loadOldSimulation - No xml design plan file found INFO [AWT-EventQueue-0] (DataStorage.java:209) getStorage - Create new storage for Cam2 INFO [AWT-EventQueue-0] (SimulationControl.java:202) setText - backup database en cours INFO [AWT-EventQueue-0] (SimulationControl.java:202) setText - backup database termin�� ERROR [AWT-EventQueue-0] (SimulAction.java:1087) launchSimulation - Can't start simulation fr.ifremer.isisfish.simulator.SimulationException: Can't prepare information for simulation at fr.ifremer.isisfish.simulator.launcher.SimulationService.prepareSimulationZipFile(SimulationService.java:1268) at fr.ifremer.isisfish.simulator.launcher.SimulationService.submit(SimulationService.java:406) at fr.ifremer.isisfish.ui.simulator.SimulAction.launchSimulation(SimulAction.java:1082) at fr.ifremer.isisfish.ui.simulator.ParamsUI.launchSimulation(ParamsUI.java:363) at fr.ifremer.isisfish.ui.simulator.ParamsUI.doActionPerformed__on__buttonSimulParamsSimulate(ParamsUI.java:610) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:616) at jaxx.runtime.JAXXUtil$1.invoke(JAXXUtil.java:257) at $Proxy1.actionPerformed(Unknown Source) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2012) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2335) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:404) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:253) at java.awt.Component.processMouseEvent(Component.java:6203) at javax.swing.JComponent.processMouseEvent(JComponent.java:3267) at java.awt.Component.processEvent(Component.java:5968) at java.awt.Container.processEvent(Container.java:2105) at java.awt.Component.dispatchEventImpl(Component.java:4564) at java.awt.Container.dispatchEventImpl(Container.java:2163) at java.awt.Component.dispatchEvent(Component.java:4390) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4461) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4125) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4055) at java.awt.Container.dispatchEventImpl(Container.java:2149) at java.awt.Window.dispatchEventImpl(Window.java:2478) at java.awt.Component.dispatchEvent(Component.java:4390) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:649) at java.awt.EventQueue.access$000(EventQueue.java:96) at java.awt.EventQueue$1.run(EventQueue.java:608) at java.awt.EventQueue$1.run(EventQueue.java:606) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:116) at java.awt.EventQueue$2.run(EventQueue.java:622) at java.awt.EventQueue$2.run(EventQueue.java:620) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105) at java.awt.EventQueue.dispatchEvent(EventQueue.java:619) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:275) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:200) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:185) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:177) at java.awt.EventDispatchThread.run(EventDispatchThread.java:138) Caused by: java.io.FileNotFoundException: /media/disk_externe/ISIS/isis-fish-4/isis-community-database/exports/Biomasses.java (No such file or directory) at java.io.FileInputStream.open(Native Method) at java.io.FileInputStream.(FileInputStream.java:137) at org.nuiton.util.FileUtil.copy(FileUtil.java:980) at fr.ifremer.isisfish.simulator.launcher.SimulationService.prepareSimulationZipFile(SimulationService.java:1209) ... 46 more INFO [AWT-EventQueue-0] (SimulationControl.java:202) setText - backup database en cours INFO [AWT-EventQueue-0] (SimulationControl.java:202) setText - backup database termin�� ERROR [AWT-EventQueue-0] (SimulAction.java:1087) launchSimulation - Can't start simulation fr.ifremer.isisfish.simulator.SimulationException: Can't prepare information for simulation at fr.ifremer.isisfish.simulator.launcher.SimulationService.prepareSimulationZipFile(SimulationService.java:1268) at fr.ifremer.isisfish.simulator.launcher.SimulationService.submit(SimulationService.java:406) at fr.ifremer.isisfish.ui.simulator.SimulAction.launchSimulation(SimulAction.java:1082) at fr.ifremer.isisfish.ui.simulator.ParamsUI.launchSimulation(ParamsUI.java:363) at fr.ifremer.isisfish.ui.simulator.ParamsUI.doActionPerformed__on__buttonSimulParamsSimulate(ParamsUI.java:610) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:616) at jaxx.runtime.JAXXUtil$1.invoke(JAXXUtil.java:257) at $Proxy1.actionPerformed(Unknown Source) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2012) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2335) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:404) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:253) at java.awt.Component.processMouseEvent(Component.java:6203) at javax.swing.JComponent.processMouseEvent(JComponent.java:3267) at java.awt.Component.processEvent(Component.java:5968) at java.awt.Container.processEvent(Container.java:2105) at java.awt.Component.dispatchEventImpl(Component.java:4564) at java.awt.Container.dispatchEventImpl(Container.java:2163) at java.awt.Component.dispatchEvent(Component.java:4390) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4461) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4125) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4055) at java.awt.Container.dispatchEventImpl(Container.java:2149) at java.awt.Window.dispatchEventImpl(Window.java:2478) at java.awt.Component.dispatchEvent(Component.java:4390) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:649) at java.awt.EventQueue.access$000(EventQueue.java:96) at java.awt.EventQueue$1.run(EventQueue.java:608) at java.awt.EventQueue$1.run(EventQueue.java:606) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:116) at java.awt.EventQueue$2.run(EventQueue.java:622) at java.awt.EventQueue$2.run(EventQueue.java:620) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105) at java.awt.EventQueue.dispatchEvent(EventQueue.java:619) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:275) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:200) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:185) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:177) at java.awt.EventDispatchThread.run(EventDispatchThread.java:138) Caused by: java.io.FileNotFoundException: /media/disk_externe/ISIS/isis-fish-4/isis-community-database/exports/Biomasses.java (No such file or directory) at java.io.FileInputStream.open(Native Method) at java.io.FileInputStream.(FileInputStream.java:137) at org.nuiton.util.FileUtil.copy(FileUtil.java:980) at fr.ifremer.isisfish.simulator.launcher.SimulationService.prepareSimulationZipFile(SimulationService.java:1209) ... 46 more