Author: tchemit Date: 2013-11-21 16:41:34 +0100 (Thu, 21 Nov 2013) New Revision: 1370 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1370 Log: fixes #3803: [CAPTURE] ?\195?\169l?\195?\169vations : marche pas en .csv et .pdf depuis l'onglet r?\195?\169sum?\195?\169 (improve export design, use unique code for all export, ...) Added: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ExportBatchEntry.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/AccidentalCatchExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/AccidentalCatchExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/CatchExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/CatchExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/ExportSampleCategory.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/GearCaracteristicExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/GearCaracteristicExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/IndividualObservationExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/IndividualObservationExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/MarineLitterExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/MarineLitterExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/OperationExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/OperationExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/ParameterExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/ParameterExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SpeciesExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SpeciesExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SurveyExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SurveyExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/TuttiExportService.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/CatchesPdfExportService.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/ExportCatchContext.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/PdfExportBatchEntry.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/sumatra/ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/sumatra/CatchRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/sumatra/CatchRowModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/sumatra/CatchesSumatraExportService.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportService2Test.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportServiceTest.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/pdf/ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/pdf/CatchesPdfExportServiceTest.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/sumatra/ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/sumatra/CatchesSumatraExportServiceTest.java Removed: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/catches/ExportCatchesReportService.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/AccidentalCatchExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/AccidentalCatchExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/CatchExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/CatchExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ExportSampleCategory.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/GearCaracteristicExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/GearCaracteristicExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/IndividualObservationExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/IndividualObservationExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/MarineLitterExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/MarineLitterExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/OperationExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/OperationExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ParameterExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ParameterExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SpeciesExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SpeciesExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SurveyExportModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SurveyExportRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/TuttiExportService.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchRow.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchRowModel.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchesSumatraExportService.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/catches/ExportCatchesReportServiceTest.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/TuttiExportService2Test.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/TuttiExportServiceTest.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/sumatra/CatchesSumatraExportServiceTest.java Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistence.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceNoDbImpl.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/PersistenceService.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/catches/WeightComputingService.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiUIContext.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ExportCruiseAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ExportCruiseForSumatraAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ExportProgramAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/SendCruiseReportAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ExportFishingOperationForSumatraAction.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ExportFishingOperationReportAction.java Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistence.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistence.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistence.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -24,6 +24,7 @@ * #L% */ +import com.google.common.base.Predicate; import fr.ifremer.tutti.persistence.entities.CaracteristicMap; import fr.ifremer.tutti.persistence.entities.data.AccidentalBatch; import fr.ifremer.tutti.persistence.entities.data.AttachementObjectTypeEnum; @@ -269,12 +270,10 @@ Caracteristic getCaracteristic(Integer pmfmId); + Predicate<SpeciesAbleBatch> getVracBatchPredicate(); + boolean isVracBatch(SpeciesAbleBatch speciesBatch); -// boolean isVracSpeciesBatch(SpeciesBatch speciesBatch); - -// boolean isVracBenthosBatch(BenthosBatch benthosBatch); - boolean isTemporary(TuttiReferentialEntity entity); List<Gear> getAllScientificGear(); Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -139,12 +139,8 @@ @Autowired protected DatabaseSchemaDao databaseSchemaDao; - protected Predicate<SpeciesAbleBatch> speciesAbleBatchVracPredicate; + protected Predicate<SpeciesAbleBatch> batchVracPredicate; -// protected Predicate<SpeciesBatch> speciesBatchVracPredicate; -// -// protected Predicate<BenthosBatch> benthosBatchVracPredicate; - @Override public String getImplementationName() { return "Persistence Adagio implementation"; @@ -229,9 +225,7 @@ TuttiEnumerationFile enumerationFile = getEnumerationFile(); - speciesAbleBatchVracPredicate = TuttiEntities.newSpeciesAbleBatchCategoryPredicate(enumerationFile.PMFM_ID_SORTED_UNSORTED, enumerationFile.QUALITATIVE_VRAC_ID); -// speciesBatchVracPredicate = TuttiEntities.newSpeciesBatchCategoryPredicate(enumerationFile.PMFM_ID_SORTED_UNSORTED, enumerationFile.QUALITATIVE_VRAC_ID); -// benthosBatchVracPredicate = TuttiEntities.newBenthosBatchCategoryPredicate(enumerationFile.PMFM_ID_SORTED_UNSORTED, enumerationFile.QUALITATIVE_VRAC_ID); + batchVracPredicate = TuttiEntities.newSpeciesAbleBatchCategoryPredicate(enumerationFile.PMFM_ID_SORTED_UNSORTED, enumerationFile.QUALITATIVE_VRAC_ID); } @Override @@ -421,18 +415,13 @@ @Override public boolean isVracBatch(SpeciesAbleBatch speciesBatch) { - return speciesAbleBatchVracPredicate.apply(speciesBatch); + return batchVracPredicate.apply(speciesBatch); } -// @Override -// public boolean isVracSpeciesBatch(SpeciesBatch speciesBatch) { -// return speciesBatchVracPredicate.apply(speciesBatch); -// } -// -// @Override -// public boolean isVracBenthosBatch(BenthosBatch benthosBatch) { -// return benthosBatchVracPredicate.apply(benthosBatch); -// } + @Override + public Predicate<SpeciesAbleBatch> getVracBatchPredicate() { + return batchVracPredicate; + } @Override public boolean isTemporary(TuttiReferentialEntity entity) { Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceNoDbImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceNoDbImpl.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceNoDbImpl.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -24,6 +24,7 @@ * #L% */ +import com.google.common.base.Predicate; import fr.ifremer.tutti.persistence.entities.CaracteristicMap; import fr.ifremer.tutti.persistence.entities.data.AccidentalBatch; import fr.ifremer.tutti.persistence.entities.data.AttachementObjectTypeEnum; @@ -97,16 +98,6 @@ throw notImplemented(); } -// @Override -// public boolean isVracSpeciesBatch(SpeciesBatch speciesBatch) { -// throw notImplemented(); -// } -// -// @Override -// public boolean isVracBenthosBatch(BenthosBatch benthosBatch) { -// throw notImplemented(); -// } - @Override public void clearAllCaches() { throw notImplemented(); @@ -263,6 +254,11 @@ } @Override + public Predicate<SpeciesAbleBatch> getVracBatchPredicate() { + throw notImplemented(); + } + + @Override public boolean isTemporary(TuttiReferentialEntity entity) { throw notImplemented(); } Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/PersistenceService.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/PersistenceService.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/PersistenceService.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -26,6 +26,7 @@ import com.google.common.base.Function; import com.google.common.base.Preconditions; +import com.google.common.base.Predicate; import com.google.common.collect.Lists; import com.google.common.collect.Maps; import fr.ifremer.tutti.TuttiBusinessException; @@ -837,6 +838,11 @@ } @Override + public Predicate<SpeciesAbleBatch> getVracBatchPredicate() { + return driver.getVracBatchPredicate(); + } + + @Override public boolean isTemporary(TuttiReferentialEntity entity) { return driver.isTemporary(entity); } Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/catches/ExportCatchesReportService.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/catches/ExportCatchesReportService.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/catches/ExportCatchesReportService.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,493 +0,0 @@ -package fr.ifremer.tutti.service.catches; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import com.google.common.collect.Lists; -import com.google.common.collect.Maps; -import fr.ifremer.tutti.TuttiBusinessException; -import fr.ifremer.tutti.TuttiTechnicalException; -import fr.ifremer.tutti.persistence.entities.TuttiEntities; -import fr.ifremer.tutti.persistence.entities.data.BatchContainer; -import fr.ifremer.tutti.persistence.entities.data.BenthosBatch; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.MarineLitterBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.service.AbstractTuttiService; -import fr.ifremer.tutti.service.PersistenceService; -import fr.ifremer.tutti.service.TuttiServiceContext; -import freemarker.cache.ClassTemplateLoader; -import freemarker.ext.beans.BeansWrapper; -import freemarker.template.Configuration; -import freemarker.template.Template; -import org.apache.commons.collections.CollectionUtils; -import org.apache.commons.io.IOUtils; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.xhtmlrenderer.pdf.ITextRenderer; - -import java.io.File; -import java.io.FileOutputStream; -import java.io.OutputStream; -import java.io.StringWriter; -import java.io.Writer; -import java.util.List; -import java.util.Locale; -import java.util.Map; - -import static org.nuiton.i18n.I18n._; - -/** - * @author kmorin <kmorin@codelutin.com> - * @since 2.0 - */ -public class ExportCatchesReportService extends AbstractTuttiService { - - /** Logger. */ - private static final Log log = - LogFactory.getLog(ExportCatchesReportService.class); - - protected Configuration freemarkerConfiguration; - - protected PersistenceService persistenceService; - - protected WeightComputingService weightComputingService; - - public ExportCatchesReportService() { - super(); - - freemarkerConfiguration = new Configuration(); - - // needed to overwrite "Defaults to default system encoding." - // fix encoding issue on some systems - freemarkerConfiguration.setEncoding(Locale.getDefault(), "UTF-8"); - - // specific template loader to get template from jars (classpath) - ClassTemplateLoader templateLoader = new ClassTemplateLoader(ExportCatchesReportService.class, "/ftl"); - freemarkerConfiguration.setTemplateLoader(templateLoader); - - // pour les maps dans les template (entre autre) - freemarkerConfiguration.setObjectWrapper(new BeansWrapper()); - } - - @Override - public void setServiceContext(TuttiServiceContext context) { - super.setServiceContext(context); - persistenceService = getService(PersistenceService.class); - weightComputingService = getService(WeightComputingService.class); - } - - /** - * Generate the PDF report for the fiven cruise. - * - * @param targetFile pdf file to generate - * @param locale generated pdf locale - * @throws TuttiBusinessException - */ - public void generateCruisePDFFile(File targetFile, - String cruiseId, - Locale locale) throws TuttiBusinessException { - - - List<String> allFishingOperation = - persistenceService.getAllFishingOperationIds(cruiseId); - - List<Map<String, Object>> operations = Lists.newArrayList(); - for (String operationId : allFishingOperation) { - - prepareOperation(operationId, operations); - - } - - generatePdf(targetFile, locale, operations); - } - - /** - * Generate the PDF report for the given fishing operation. - * - * @param targetFile pdf file to generate - * @param fishingOperationId id of the fishing operation to export - * @param locale generated pdf locale - * @throws TuttiBusinessException - * @since 2.7 - */ - public void generateFishingOperationPDFFile(File targetFile, - String fishingOperationId, - Locale locale) throws TuttiBusinessException { - - List<Map<String, Object>> operations = Lists.newArrayList(); - - prepareOperation(fishingOperationId, operations); - - generatePdf(targetFile, locale, operations); - } - - protected void prepareOperation(String fishingOperationId, - List<Map<String, Object>> operations) { - - // get operation and catch data - boolean withCatchBatch = - persistenceService.isFishingOperationWithCatchBatch( - fishingOperationId); - - if (!withCatchBatch) { - if (log.isWarnEnabled()) { - log.warn("Skip fishing operation " + fishingOperationId + - " since no catchBatch associated."); - } - return; - } - - FishingOperation fishingOperation = - persistenceService.getFishingOperation(fishingOperationId); - - CatchBatch catchBatch = - persistenceService.getCatchBatchFromFishingOperation(fishingOperationId); - - BatchContainer<SpeciesBatch> rootSpeciesBatch = - weightComputingService.getComputedSpeciesBatches(fishingOperationId); - - BatchContainer<BenthosBatch> rootBenthosBatch = - weightComputingService.getComputedBenthosBatches(fishingOperationId); - - BatchContainer<MarineLitterBatch> marineLitterBatches = - weightComputingService.getComputedMarineLitterBatches( - fishingOperationId, - catchBatch.getMarineLitterTotalWeight()); - weightComputingService.computeCatchBatchWeights(catchBatch, - rootSpeciesBatch, - rootBenthosBatch, - marineLitterBatches); - - // create operation data model - Map<String, Object> op = createOperation(fishingOperation); - - float totalWeight = TuttiEntities.getValueOrComputedValue( - catchBatch.getCatchTotalWeight(), - catchBatch.getCatchTotalComputedWeight()); - - op.put("totalWeight", totalWeight); - - op.put("totalSortedWeight", catchBatch.getSpeciesTotalSampleSortedComputedWeight() + catchBatch.getBenthosTotalSampleSortedComputedWeight()); - - // create catches data model - - // Species - - Map<Species, SpeciesBatchEntry> catches = Maps.newHashMap(); - - float globalRatio = (totalWeight - catchBatch.getCatchTotalUnsortedComputedWeight()) / catchBatch.getCatchTotalSortedComputedWeight(); - - float speciesTotalSortedWeight = TuttiEntities.getValueOrComputedValue( - catchBatch.getSpeciesTotalSortedWeight(), - catchBatch.getSpeciesTotalSortedComputedWeight()); - - // ratio total species weight / total sorted sampled species weight - float speciesRatio = globalRatio * speciesTotalSortedWeight; - if (catchBatch.getSpeciesTotalSampleSortedComputedWeight() > 0) { - speciesRatio /= catchBatch.getSpeciesTotalSampleSortedComputedWeight(); - } - - // create catches rows - if (rootSpeciesBatch != null) { - - List<SpeciesBatch> speciesBatches = rootSpeciesBatch.getChildren(); - for (SpeciesBatch batch : speciesBatches) { - - createSpeciesCatch(batch, catches, speciesRatio); - } - } - - List<SpeciesBatchEntry> catchList = Lists.newArrayList(catches.values()); - - // Benthos - - float benthosTotalSortedWeight = TuttiEntities.getValueOrComputedValue( - catchBatch.getBenthosTotalSortedWeight(), - catchBatch.getBenthosTotalSortedComputedWeight()); - - // ratio total benthos weight / total sorted sampled benthos weight - float benthosRatio = globalRatio * benthosTotalSortedWeight; - if (catchBatch.getBenthosTotalSampleSortedComputedWeight() > 0) { - benthosRatio /= catchBatch.getBenthosTotalSampleSortedComputedWeight(); - } - - // add the benthos row - if (rootBenthosBatch != null) { - - if (CollectionUtils.isNotEmpty(rootBenthosBatch.getChildren())) { - SpeciesBatchEntry benthosCatch = - createBenthosCatch(rootBenthosBatch, benthosRatio); - catchList.add(benthosCatch); - } - } - - // Inert and living not itemized - SpeciesBatchEntry inertLivingNotItemizedCatch = - createInertAndLivingNotItemizedCatch(catchBatch, - speciesRatio, - benthosRatio); - if (inertLivingNotItemizedCatch.getSortedWeight() > 0f) { - catchList.add(inertLivingNotItemizedCatch); - } - - if (log.isDebugEnabled()) { - - // recompute total for check - float computedTotalWeight = 0f; - float computedPercentage = 0f; - for (SpeciesBatchEntry entry : catchList) { - entry.computePercentage(totalWeight); - computedTotalWeight += entry.getTotalWeight(); - computedPercentage += entry.getPercentage(); - } - log.debug("TotalWeight: " + totalWeight); - log.debug("ComputedTotalWeight: " + computedTotalWeight); - log.debug("ComputedPercentage: " + computedPercentage); - } - op.put("catches", catchList); - operations.add(op); - } - - protected void generatePdf(File targetFile, Locale locale, List<Map<String, Object>> operations) { - - Map<String, Object> data = Maps.newHashMap(); - data.put("operations", operations); - // generate the report - OutputStream os = null; - try { - - // render freemarker template - Template mapTemplate = freemarkerConfiguration.getTemplate("catchesReport.ftl", locale); - - Writer out = new StringWriter(); - mapTemplate.process(data, out); - out.flush(); - - // render template output as pdf - os = new FileOutputStream(targetFile); - - ITextRenderer renderer = new ITextRenderer(); - renderer.setDocumentFromString(out.toString()); - renderer.layout(); - renderer.createPDF(os); - - os.close(); - - } catch (Exception ex) { - throw new TuttiTechnicalException(_("tutti.service.operations.exportCatchesReport.error"), ex); - } finally { - IOUtils.closeQuietly(os); - } - } - - protected Map<String, Object> createOperation(FishingOperation fishingOperation) { - Map<String, Object> op = Maps.newHashMap(); - op.put("number", fishingOperation.getFishingOperationNumber()); - op.put("station", fishingOperation.getStationNumber()); - op.put("rigNumber", fishingOperation.getMultirigAggregation()); - op.put("startDate", fishingOperation.getGearShootingStartDate()); - op.put("endDate", fishingOperation.getGearShootingEndDate()); - - return op; - } - - protected void createSpeciesCatch(SpeciesBatch batch, - Map<Species, SpeciesBatchEntry> catches, - float ratio) { - - Species species = batch.getSpecies(); - - SpeciesBatchEntry ktch = catches.get(species); - if (ktch == null) { - Species speciesWithVerncularCode = - persistenceService.getSpeciesByReferenceTaxonIdWithVernacularCode(species.getReferenceTaxonId()); - - ktch = new SpeciesBatchEntry( - species.getRefTaxCode(), - species.getName(), - speciesWithVerncularCode.getVernacularCode() - ); - catches.put(species, ktch); - } - - float sortedWeight = TuttiEntities.getValueOrComputedValue( - batch.getSampleCategoryWeight(), - batch.getSampleCategoryComputedWeight()); - - ktch.addSortedWeight(sortedWeight); - - float speciesTotalWeight = sortedWeight; - if (persistenceService.isVracBatch(batch)) { - speciesTotalWeight *= ratio; - } - ktch.addTotalWeight(speciesTotalWeight); - } - - protected SpeciesBatchEntry createBenthosCatch(BatchContainer<BenthosBatch> rootBenthosBatch, - float ratio) { - SpeciesBatchEntry ktch = new SpeciesBatchEntry( - _("tutti.service.operations.exportCatchesReport.specialRows.benthos.code"), - "", - _("tutti.service.operations.exportCatchesReport.specialRows.benthos.name") - ); - - float sortedWeight = 0f; - float benthosTotalWeight = 0f; - List<BenthosBatch> benthosBatches = rootBenthosBatch.getChildren(); - for (BenthosBatch batch : benthosBatches) { - float batchWeight = TuttiEntities.getValueOrComputedValue( - batch.getSampleCategoryWeight(), - batch.getSampleCategoryComputedWeight()); - sortedWeight += batchWeight; - if (persistenceService.isVracBatch(batch)) { - batchWeight *= ratio; - } - benthosTotalWeight += batchWeight; - } - ktch.addSortedWeight(sortedWeight); - ktch.addTotalWeight(benthosTotalWeight); - - return ktch; - } - - protected SpeciesBatchEntry createInertAndLivingNotItemizedCatch(CatchBatch catchBatch, - float speciesRatio, - float benthosRatio) { - SpeciesBatchEntry ktch = new SpeciesBatchEntry( - _("tutti.service.operations.exportCatchesReport.specialRows.inertAndLivinngNotItemized.code"), - "", - _("tutti.service.operations.exportCatchesReport.specialRows.inertAndLivinngNotItemized.name")); - - float sortedWeight = 0f; - float totalWeight = 0f; - - Float speciesInterWeight = TuttiEntities.getValueOrComputedValue( - catchBatch.getSpeciesTotalInertWeight(), - catchBatch.getSpeciesTotalInertComputedWeight()); - - if (speciesInterWeight != null) { - sortedWeight += speciesInterWeight; - totalWeight += speciesInterWeight * speciesRatio; - } - - Float speciesLivingNotItemizedWeigth = TuttiEntities.getValueOrComputedValue( - catchBatch.getSpeciesTotalLivingNotItemizedWeight(), - catchBatch.getSpeciesTotalLivingNotItemizedComputedWeight()); - - if (speciesLivingNotItemizedWeigth != null) { - sortedWeight += speciesLivingNotItemizedWeigth; - totalWeight += speciesLivingNotItemizedWeigth * speciesRatio; - } - - Float benthosInterWeight = TuttiEntities.getValueOrComputedValue( - catchBatch.getBenthosTotalInertWeight(), - catchBatch.getBenthosTotalInertComputedWeight()); - - if (benthosInterWeight != null) { - sortedWeight += benthosInterWeight; - totalWeight += benthosInterWeight * benthosRatio; - } - - Float benthosLivingNotItemizedWeight = TuttiEntities.getValueOrComputedValue( - catchBatch.getBenthosTotalLivingNotItemizedWeight(), - catchBatch.getBenthosTotalLivingNotItemizedComputedWeight()); - - if (benthosLivingNotItemizedWeight != null) { - sortedWeight += benthosLivingNotItemizedWeight; - totalWeight += benthosLivingNotItemizedWeight * benthosRatio; - } - - ktch.addSortedWeight(sortedWeight); - ktch.addTotalWeight(totalWeight); - - return ktch; - } - - /** - * To store a species or batch entry within his speices informations, - * his sorted weight, total weight and percentage amoong the total catch - * weight. - * - * @since 2.10 - */ - public static class SpeciesBatchEntry { - - protected final String code; - - protected final String scientificName; - - protected final String commonName; - - float sortedWeight; - - float totalWeight; - - float percentage; - - SpeciesBatchEntry(String code, String scientificName, String commonName) { - this.code = code; - this.scientificName = scientificName; - this.commonName = commonName; - } - - public void addSortedWeight(float weight) { - sortedWeight += weight; - } - - public void addTotalWeight(float weight) { - totalWeight += weight; - } - - public void computePercentage(float totalWeight) { - this.percentage = 100 * this.totalWeight / totalWeight; - } - - public String getCode() { - return code; - } - - public String getScientificName() { - return scientificName; - } - - public String getCommonName() { - return commonName; - } - - public float getSortedWeight() { - return sortedWeight; - } - - public float getTotalWeight() { - return totalWeight; - } - - public float getPercentage() { - return percentage; - } - } -} Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/catches/WeightComputingService.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/catches/WeightComputingService.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/catches/WeightComputingService.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -301,8 +301,10 @@ marineLitterTotalComputedWeight += rowWeight; } } - catchBatch.setMarineLitterTotalComputedWeight( - TuttiEntities.roundKiloGram(marineLitterTotalComputedWeight)); + if (marineLitterTotalComputedWeight != null) { + catchBatch.setMarineLitterTotalComputedWeight( + TuttiEntities.roundKiloGram(marineLitterTotalComputedWeight)); + } Float marineLitterTotalWeight = catchBatch.getMarineLitterTotalWeight(); if (marineLitterTotalWeight == null) { Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/AccidentalCatchExportModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/AccidentalCatchExportModel.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/AccidentalCatchExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,170 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.CaracteristicMap; -import fr.ifremer.tutti.persistence.entities.data.AccidentalBatch; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.Gear; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.service.PersistenceService; -import fr.ifremer.tutti.service.TuttiCsvUtil; -import org.apache.commons.collections.CollectionUtils; -import org.apache.commons.collections.MapUtils; - -import java.io.Serializable; -import java.util.List; -import java.util.Map; - -/** - * TODO - * - * @author tchemit <chemit@codelutin.com> - * @since 2.2 - */ -public class AccidentalCatchExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<AccidentalCatchExportRow> { - - protected final Caracteristic caracteristicDeadOrAliveSize; - - protected final Caracteristic caracteristicGender; - - protected final Caracteristic caracteristicWeight; - - protected final Caracteristic caracteristicPmfmId; - - public AccidentalCatchExportModel( - char separator, - Caracteristic caracteristicDeadOrAliveSize, - Caracteristic caracteristicGender, - Caracteristic caracteristicWeight, - Caracteristic caracteristicPmfmId) { - super(separator); - - this.caracteristicDeadOrAliveSize = caracteristicDeadOrAliveSize; - this.caracteristicGender = caracteristicGender; - this.caracteristicWeight = caracteristicWeight; - this.caracteristicPmfmId = caracteristicPmfmId; - - newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); - newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); - newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); - newNullableColumnForExport("Engin", FishingOperation.PROPERTY_GEAR + "." + Gear.PROPERTY_NAME); - newColumnForExport("Code_station", FishingOperation.PROPERTY_STATION_NUMBER); - newColumnForExport("Numero_Trait", FishingOperation.PROPERTY_FISHING_OPERATION_NUMBER, TuttiCsvUtil.INTEGER); - newColumnForExport("Poche", FishingOperation.PROPERTY_MULTIRIG_AGGREGATION); - newColumnForExport("Navire", Cruise.PROPERTY_VESSEL, TuttiCsvUtil.VESSEL_VALUE_FORMATTER); - - newColumnForExport("BatchId", AccidentalCatchExportRow.PROPERTY_BATCH_ID, TuttiCsvUtil.PRIMITIVE_INTEGER); - newColumnForExport("ReferenceTaxonId", AccidentalBatch.PROPERTY_SPECIES + "." + Species.PROPERTY_REFERENCE_TAXON_ID, TuttiCsvUtil.PRIMITIVE_INTEGER); - newColumnForExport("ReferenceTaxonName", AccidentalBatch.PROPERTY_SPECIES + "." + Species.PROPERTY_NAME); - newColumnForExport("Commentaire", AccidentalBatch.PROPERTY_COMMENT); - newColumnForExport("CaracteristicId", AccidentalCatchExportRow.PROPERTY_CARACTERISTIC, Caracteristic.PROPERTY_ID); - newColumnForExport("CaracteristicValue", AccidentalCatchExportRow.PROPERTY_CARACTERISTIC_VALUE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); - } - - public void prepareRows(PersistenceService persistenceService, - List<AccidentalCatchExportRow> rows, - Cruise cruise, - FishingOperation operation) { - - List<AccidentalBatch> observations = - persistenceService.getAllAccidentalBatch(operation.getId()); - - if (CollectionUtils.isNotEmpty(observations)) { - for (AccidentalBatch child : observations) { - - addCaracteristicRow(rows, - cruise, - operation, - child, - caracteristicDeadOrAliveSize, - child.getDeadOrAlive()); - - addCaracteristicRow(rows, - cruise, - operation, - child, - caracteristicGender, - child.getGender()); - - addCaracteristicRow(rows, - cruise, - operation, - child, - caracteristicWeight, - child.getWeight()); - - if (child.getLengthStepCaracteristic() != null) { - addCaracteristicRow(rows, - cruise, - operation, - child, - caracteristicPmfmId, - child.getLengthStepCaracteristic().getIdAsInt()); - - addCaracteristicRow(rows, - cruise, - operation, - child, - child.getLengthStepCaracteristic(), - child.getSize()); - } - - CaracteristicMap caracteristics = child.getCaracteristics(); - if (MapUtils.isNotEmpty(caracteristics)) { - for (Map.Entry<Caracteristic, Serializable> entry : caracteristics.entrySet()) { - addCaracteristicRow(rows, - cruise, - operation, - child, - entry.getKey(), - entry.getValue()); - } - } - } - } - } - - private void addCaracteristicRow(List<AccidentalCatchExportRow> rows, - Cruise cruise, - FishingOperation operation, - AccidentalBatch child, - Caracteristic caracteristic, - Serializable caracteristicValue) { - if (caracteristicValue != null) { - - AccidentalCatchExportRow row = new AccidentalCatchExportRow(); - row.setCruise(cruise); - row.setFishingOperation(operation); - row.setBatch(child); - row.setCaracteristic(caracteristic); - row.setCaracteristicValue(caracteristicValue); - rows.add(row); - } - } -} \ No newline at end of file Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/AccidentalCatchExportRow.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/AccidentalCatchExportRow.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/AccidentalCatchExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,139 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.data.AccidentalBatch; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.Gear; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.persistence.entities.referential.Vessel; - -import java.io.Serializable; -import java.util.Date; - -/** - * A row in a accidental catch export. - * - * @author tchemit <chemit@codelutin.com> - * @since 2.2 - */ -public class AccidentalCatchExportRow implements Serializable { - - public static final String PROPERTY_BATCH = "batch"; - - private static final long serialVersionUID = 1L; - - public static final String PROPERTY_BATCH_ID = "batchId"; - - public static final String PROPERTY_CARACTERISTIC = "caracteristic"; - - public static final String PROPERTY_CARACTERISTIC_VALUE = "caracteristicValue"; - - protected Cruise cruise; - - protected FishingOperation fishingOperation; - - protected AccidentalBatch batch; - - protected Caracteristic caracteristic; - - protected Serializable caracteristicValue; - - public void setCruise(Cruise cruise) { - this.cruise = cruise; - } - - public void setFishingOperation(FishingOperation fishingOperation) { - this.fishingOperation = fishingOperation; - } - - public void setBatch(AccidentalBatch batch) { - this.batch = batch; - } - - public void setCaracteristic(Caracteristic caracteristic) { - this.caracteristic = caracteristic; - } - - public void setCaracteristicValue(Serializable caracteristicValue) { - this.caracteristicValue = caracteristicValue; - } - - public Integer getBatchId() { - return batch.getIdAsInt(); - } - - public Caracteristic getCaracteristic() { - return caracteristic; - } - - public Serializable getCaracteristicValue() { - return caracteristicValue; - } - - public String getComment() { - return batch.getComment(); - } - - public Species getSpecies() { - return batch.getSpecies(); - } - - public Date getBeginDate() { - return cruise.getBeginDate(); - } - - public Program getProgram() { - return cruise.getProgram(); - } - - public String getSurveyPart() { - return cruise.getSurveyPart(); - } - - public String getStationNumber() { - return fishingOperation.getStationNumber(); - } - - public Integer getFishingOperationNumber() { - return fishingOperation.getFishingOperationNumber(); - } - - public Gear getGear() { - return fishingOperation.getGear(); - } - - public Vessel getVessel() { - return fishingOperation.getVessel(); - } - - public String getMultirigAggregation() { - return fishingOperation.getMultirigAggregation(); - } - -} Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/CatchExportModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/CatchExportModel.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/CatchExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,457 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.TuttiEntities; -import fr.ifremer.tutti.persistence.entities.data.BatchContainer; -import fr.ifremer.tutti.persistence.entities.data.BenthosBatch; -import fr.ifremer.tutti.persistence.entities.data.BenthosBatchFrequency; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.data.SampleCategoryModel; -import fr.ifremer.tutti.persistence.entities.data.SampleCategoryModelEntry; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.Gear; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.service.DecoratorService; -import fr.ifremer.tutti.service.PersistenceService; -import fr.ifremer.tutti.service.TuttiCsvUtil; -import org.apache.commons.collections.CollectionUtils; - -import java.io.Serializable; -import java.util.List; - -/** - * Model of a catch export. - * - * @author tchemit <chemit@codelutin.com> - * @since 1.3 - */ -public class CatchExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<CatchExportRow> { - - public static final String WEIGHT_OR_VOL_TYPE = "Poids"; - - protected SampleCategoryModel sampleCategoryModel; - - public CatchExportModel(char separator, - SampleCategoryModel sampleCategoryModel, - DecoratorService decoratorService) { - super(separator); - this.sampleCategoryModel = sampleCategoryModel; - - newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); - newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); - newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); - newNullableColumnForExport("Engin", FishingOperation.PROPERTY_GEAR + "." + Gear.PROPERTY_NAME); - newColumnForExport("Code_station", FishingOperation.PROPERTY_STATION_NUMBER); - newColumnForExport("Numero_Trait", FishingOperation.PROPERTY_FISHING_OPERATION_NUMBER, TuttiCsvUtil.INTEGER); - newColumnForExport("Poche", FishingOperation.PROPERTY_MULTIRIG_AGGREGATION); - newColumnForExport("Navire", Cruise.PROPERTY_VESSEL, TuttiCsvUtil.VESSEL_VALUE_FORMATTER); - newColumnForExport("Taxon", SpeciesBatch.PROPERTY_SPECIES + "." + Species.PROPERTY_REFERENCE_TAXON_ID, TuttiCsvUtil.INTEGER); - newColumnForExport("Nom_scientifique", SpeciesBatch.PROPERTY_SPECIES + "." + Species.PROPERTY_NAME); - newColumnForExport("Commentaire", SpeciesBatch.PROPERTY_COMMENT); - - for (SampleCategoryModelEntry entry : sampleCategoryModel.getCategory()) { - addSampleCategory(entry.getCanonicalLabel(), entry.getOrder()); - } - - // mensuration - - newNullableColumnForExport("Code_Longueur", CatchExportRow.FREQUENCY_LENGTH_STEP_CARACTERISTIC + "." + Caracteristic.PROPERTY_ID); - newNullableColumnForExportByDecorator("Libelle_Longueur", CatchExportRow.FREQUENCY_LENGTH_STEP_CARACTERISTIC, decoratorService.getDecoratorByType(Caracteristic.class)); - newNullableColumnForExport("Taille", CatchExportRow.FREQUENCY_LENGTH_STEP, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("NumOrdre_Taille_H2", CatchExportRow.FREQUENCY_RANK_ORDER, TuttiCsvUtil.INTEGER); - newNullableColumnForExport("Poids_Classe_Taille", CatchExportRow.FREQUENCY_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Unite_Taille", CatchExportRow.FREQUENCY_LENGTH_STEP_CARACTERISTIC + "." + Caracteristic.PROPERTY_UNIT); - newNullableColumnForExport("Precision_Mesure", CatchExportRow.FREQUENCY_LENGTH_STEP_CARACTERISTIC + "." + Caracteristic.PROPERTY_PRECISION, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Nbr", CatchExportRow.BATCH_NUMBER, TuttiCsvUtil.INTEGER); - - newColumnForExport("Poids_Reference", CatchExportRow.REFERENCE_WEIGHT, TuttiCsvUtil.PRIMITIVE_FLOAT); - newColumnForExport("Coef_Elev_Espece_Capture", CatchExportRow.RAISING_FACTOR, TuttiCsvUtil.PRIMITIVE_FLOAT); - } - - public void prepareRows(PersistenceService persistenceService, - List<CatchExportRow> rows, - Cruise cruise, - FishingOperation operation, - BatchContainer<SpeciesBatch> rootSpeciesBatch, - BatchContainer<BenthosBatch> rootBenthosBatch, - Float speciesCatchRaisingFactor, - Float benthosCatchRaisingFactor) { - - Caracteristic weightMeasuredCaracteristic = persistenceService.getWeightMeasuredCaracteristic(); - String batchWeightUnit = weightMeasuredCaracteristic.getUnit(); - - for (SpeciesBatch speciesBatch : rootSpeciesBatch.getChildren()) { - CatchExportRow row = new CatchExportRow(); - row.setCruise(cruise); - row.setFishingOperation(operation); - row.setSpecies(speciesBatch.getSpecies()); - row.setBatchWeightUnit(batchWeightUnit); - - if (persistenceService.isVracBatch(speciesBatch)) { - - // compute species total weight in catch - - Float sortedBatchWeight = TuttiEntities.getValueOrComputedValue( - speciesBatch.getSampleCategoryWeight(), - speciesBatch.getSampleCategoryComputedWeight()); - - float totalBatchWeight = sortedBatchWeight == null ? 0 : speciesCatchRaisingFactor * - sortedBatchWeight; - - prepareSortedRows(persistenceService, - row, - rows, - speciesBatch, - totalBatchWeight); - } else { - prepareUnsortedRows(row, rows, speciesBatch); - } - - } - for (BenthosBatch benthosBatch : rootBenthosBatch.getChildren()) { - CatchExportRow row = new CatchExportRow(); - row.setCruise(cruise); - row.setFishingOperation(operation); - row.setSpecies(benthosBatch.getSpecies()); - row.setBatchWeightUnit(batchWeightUnit); - - if (persistenceService.isVracBatch(benthosBatch)) { - - // compute species total weight in catch - - Float sortedBatchWeight = TuttiEntities.getValueOrComputedValue( - benthosBatch.getSampleCategoryWeight(), - benthosBatch.getSampleCategoryComputedWeight()); - - float totalBatchWeight = sortedBatchWeight == null ? 0 : benthosCatchRaisingFactor * - sortedBatchWeight; - - prepareSortedRows(persistenceService, - row, - rows, - benthosBatch, - totalBatchWeight); - } else { - prepareUnsortedRows(row, rows, benthosBatch); - } - } - } - - protected void prepareSortedRows(PersistenceService persistenceService, - CatchExportRow currentRow, - List<CatchExportRow> rows, - SpeciesBatch speciesBatch, - final float totalBatchWeight) { - - currentRow.addComment(speciesBatch.getComment()); - - prepareBatch(currentRow, - speciesBatch.getSampleCategoryId(), - speciesBatch.getSampleCategoryValue(), - speciesBatch.getSampleCategoryWeight(), - speciesBatch.getSampleCategoryComputedWeight(), - speciesBatch.getWeight(), - speciesBatch.getNumber(), - speciesBatch.getRankOrder()); - - if (speciesBatch.isChildBatchsEmpty()) { - - // on a leaf, get frequencies - - List<SpeciesBatchFrequency> speciesBatchFrequency = - persistenceService.getAllSpeciesBatchFrequency(speciesBatch.getId()); - - if (CollectionUtils.isEmpty(speciesBatchFrequency)) { - - // no frequency - - CatchExportRow row = currentRow.copy(); - - // Get reference weight - - Float referenceWeight = TuttiEntities.getValueOrComputedValue( - speciesBatch.getWeight(), - speciesBatch.getComputedWeight()); - - if (referenceWeight == null) { - - referenceWeight = TuttiEntities.getValueOrComputedValue( - speciesBatch.getSampleCategoryWeight(), - speciesBatch.getSampleCategoryComputedWeight()); - } - setRaisingFactor(row, totalBatchWeight, referenceWeight); - rows.add(row); - } else { - - // there is some frequencies - - boolean withNoWeightOnFrequencies = - speciesBatchFrequency.get(0).getWeight() == null; - - Float referenceWeight = null; - - if (withNoWeightOnFrequencies) { - - // no weight on frequencies use upper reference weight - - referenceWeight = TuttiEntities.getValueOrComputedValue( - speciesBatch.getWeight(), - speciesBatch.getComputedWeight()); - - if (referenceWeight == null) { - referenceWeight = TuttiEntities.getValueOrComputedValue( - speciesBatch.getSampleCategoryWeight(), - speciesBatch.getSampleCategoryComputedWeight()); - } - } - - for (SpeciesBatchFrequency batchFrequency : speciesBatchFrequency) { - CatchExportRow row = currentRow.copy(); - row.setSpeciesFrequency(batchFrequency); - rows.add(row); - - if (!withNoWeightOnFrequencies) { - - // use concrete frequency weight - referenceWeight = batchFrequency.getWeight(); - } - - setRaisingFactor(row, totalBatchWeight, referenceWeight); - } - } - - } else { - - for (SpeciesBatch childBatch : speciesBatch.getChildBatchs()) { - prepareSortedRows(persistenceService, - currentRow, - rows, - childBatch, - totalBatchWeight - ); - } - } - - // remove last comment (otherwise next brother will have this one too...) - currentRow.popLastComment(); - } - - protected void prepareUnsortedRows(CatchExportRow currentRow, - List<CatchExportRow> rows, - SpeciesBatch speciesBatch) { - - - prepareBatch(currentRow, - speciesBatch.getSampleCategoryId(), - speciesBatch.getSampleCategoryValue(), - speciesBatch.getSampleCategoryWeight(), - speciesBatch.getSampleCategoryComputedWeight(), - speciesBatch.getWeight(), - speciesBatch.getNumber(), - speciesBatch.getRankOrder()); - - CatchExportRow row = currentRow.copy(); - row.addComment(speciesBatch.getComment()); - float referenceWeight = TuttiEntities.getValueOrComputedValue( - speciesBatch.getSampleCategoryWeight(), - speciesBatch.getSampleCategoryComputedWeight()); - - setRaisingFactor(row, referenceWeight, referenceWeight); - rows.add(row); - } - - protected void prepareSortedRows(PersistenceService persistenceService, - CatchExportRow currentRow, - List<CatchExportRow> rows, - BenthosBatch benthosBatch, - final float totalBatchWeight) { - - currentRow.addComment(benthosBatch.getComment()); - - prepareBatch(currentRow, - benthosBatch.getSampleCategoryId(), - benthosBatch.getSampleCategoryValue(), - benthosBatch.getSampleCategoryWeight(), - benthosBatch.getSampleCategoryComputedWeight(), - benthosBatch.getWeight(), - benthosBatch.getNumber(), - benthosBatch.getRankOrder()); - - if (benthosBatch.isChildBatchsEmpty()) { - - // on a leaf, get frequencies - - List<BenthosBatchFrequency> benthosBatchFrequency = - persistenceService.getAllBenthosBatchFrequency(benthosBatch.getId()); - - if (CollectionUtils.isEmpty(benthosBatchFrequency)) { - - // no frequency - - CatchExportRow row = currentRow.copy(); - - // Get reference weight - - Float referenceWeight = TuttiEntities.getValueOrComputedValue( - benthosBatch.getWeight(), - benthosBatch.getComputedWeight()); - - if (referenceWeight == null) { - referenceWeight = TuttiEntities.getValueOrComputedValue( - benthosBatch.getSampleCategoryWeight(), - benthosBatch.getSampleCategoryComputedWeight()); - } - - setRaisingFactor(row, totalBatchWeight, referenceWeight); - rows.add(row); - } else { - - // there is some frequencies - - Float referenceWeight = null; - - boolean withNoWeightOnFrequencies = - benthosBatchFrequency.get(0).getWeight() == null; - - if (withNoWeightOnFrequencies) { - - // no weight on frequencies use upper reference weight - - referenceWeight = TuttiEntities.getValueOrComputedValue( - benthosBatch.getWeight(), - benthosBatch.getComputedWeight()); - - if (referenceWeight == null) { - referenceWeight = TuttiEntities.getValueOrComputedValue( - benthosBatch.getSampleCategoryWeight(), - benthosBatch.getSampleCategoryComputedWeight()); - } - } - - for (BenthosBatchFrequency batchFrequency : benthosBatchFrequency) { - CatchExportRow row = currentRow.copy(); - row.setBenthosFrequency(batchFrequency); - rows.add(row); - - if (!withNoWeightOnFrequencies) { - - // use concrete frequency weight - referenceWeight = batchFrequency.getWeight(); - } - - setRaisingFactor(row, totalBatchWeight, referenceWeight); - } - } - - } else { - - for (BenthosBatch childBatch : benthosBatch.getChildBatchs()) { - prepareSortedRows(persistenceService, - currentRow, - rows, - childBatch, - totalBatchWeight); - } - } - - // remove last comment (otherwise next brother will have this one too...) - currentRow.popLastComment(); - } - - protected void prepareUnsortedRows(CatchExportRow currentRow, - List<CatchExportRow> rows, - BenthosBatch benthosBatch) { - - prepareBatch(currentRow, - benthosBatch.getSampleCategoryId(), - benthosBatch.getSampleCategoryValue(), - benthosBatch.getSampleCategoryWeight(), - benthosBatch.getSampleCategoryComputedWeight(), - benthosBatch.getWeight(), - benthosBatch.getNumber(), - benthosBatch.getRankOrder()); - - CatchExportRow row = currentRow.copy(); - row.addComment(benthosBatch.getComment()); - - Float referenceWeight = TuttiEntities.getValueOrComputedValue( - benthosBatch.getSampleCategoryWeight(), - benthosBatch.getSampleCategoryComputedWeight()); - - setRaisingFactor(row, referenceWeight, referenceWeight); - - rows.add(row); - } - - protected void setRaisingFactor(CatchExportRow row, - float totalBatchWeight, - Float referenceWeight) { - row.setReferenceWeight(referenceWeight); - row.setRaisingFactor(referenceWeight == null ? 1.0f : (totalBatchWeight / referenceWeight)); - } - - protected void prepareBatch(CatchExportRow currentRow, - Integer sampleCategoryId, - Serializable sampleCategoryValue, - Float sampleCategoryWeight, - Float sampleCategoryComputedWeight, - Float batchWeight, - Integer batchNumber, - Integer batchRankOrder) { - currentRow.setBatchNumber(batchNumber); - - ExportSampleCategory<Serializable> sampleCategory = - new ExportSampleCategory<Serializable>(); - SampleCategoryModelEntry categoryById = - sampleCategoryModel.getCategoryById(sampleCategoryId); - sampleCategory.setCategoryDef(categoryById); - sampleCategory.setCategoryValue(sampleCategoryValue); - sampleCategory.setCategoryWeight(sampleCategoryWeight); - sampleCategory.setSampleWeight(batchWeight); - - sampleCategory.setComputedWeight(sampleCategoryComputedWeight); - sampleCategory.setWeightOrVolType(WEIGHT_OR_VOL_TYPE); - sampleCategory.setRankOrder(batchRankOrder); - - currentRow.addSampleCategory(sampleCategory); - } - - protected void addSampleCategory(String headerPrefix, int categoryOrder) { - - String categoryName = CatchExportRow.SAMPLE_CATEGORY; - newIndexNullableColumnForExport(headerPrefix, categoryName, categoryOrder, ExportSampleCategory.PROPERTY_CATEGORY_VALUE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); - newIndexNullableColumnForExport("Num_Ordre_" + headerPrefix + "_H2", categoryName, categoryOrder, ExportSampleCategory.PROPERTY_RANK_ORDER, TuttiCsvUtil.INTEGER); - newIndexNullableColumnForExport("Tot_" + headerPrefix, categoryName, categoryOrder, ExportSampleCategory.PROPERTY_CATEGORY_WEIGHT, TuttiCsvUtil.FLOAT); - newIndexNullableColumnForExport("Ech_" + headerPrefix, categoryName, categoryOrder, ExportSampleCategory.PROPERTY_SAMPLE_WEIGHT, TuttiCsvUtil.FLOAT); - newIndexNullableColumnForExport("Type_Volume_Poids_" + headerPrefix, categoryName, categoryOrder, ExportSampleCategory.PROPERTY_WEIGHT_OR_VOL_TYPE); - newNullableColumnForExport("Unite_Volume_Poids_" + headerPrefix, CatchExportRow.BATCH_WEIGHT_UNIT); - } - -} \ No newline at end of file Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/CatchExportRow.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/CatchExportRow.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/CatchExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,254 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import com.google.common.base.Joiner; -import com.google.common.base.Preconditions; -import com.google.common.collect.Lists; -import fr.ifremer.tutti.persistence.entities.data.BenthosBatchFrequency; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; -import fr.ifremer.tutti.persistence.entities.referential.Gear; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.persistence.entities.referential.Vessel; -import org.apache.commons.lang3.StringUtils; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; - -import java.io.Serializable; -import java.util.Date; -import java.util.List; - -/** - * A row in a catch export. - * - * @author tchemit <chemit@codelutin.com> - * @since 1.3 - */ -public class CatchExportRow implements Serializable { - - private static final long serialVersionUID = 1L; - - /** Logger. */ - private static final Log log = LogFactory.getLog(CatchExportRow.class); - - public static final String FREQUENCY_LENGTH_STEP = "frequency.lengthStep"; - - public static final String FREQUENCY_NUMBER = "frequency.number"; - - public static final String FREQUENCY_WEIGHT = "frequency.weight"; - - public static final String FREQUENCY_LENGTH_STEP_CARACTERISTIC = "frequency.lengthStepCaracteristic"; - - public static final String FREQUENCY_RANK_ORDER = "frequency.rankOrder"; - - public static final String SAMPLE_CATEGORY = "sampleCategory"; - - public static final String REFERENCE_WEIGHT = "referenceWeight"; - - public static final String RAISING_FACTOR = "raisingFactor"; - - public static final String BATCH_NUMBER = "batchNumber"; - - public static final String BATCH_WEIGHT_UNIT = "batchWeightUnit"; - - protected Cruise cruise; - - protected FishingOperation fishingOperation; - - protected final List<ExportSampleCategory> sampleCategory = Lists.newLinkedList(); - - protected SpeciesBatchFrequency speciesFrequency; - - protected BenthosBatchFrequency benthosFrequency; - - protected Species species; - - protected Float referenceWeight; - - protected float raisingFactor; - - protected Integer batchNumber; - - protected String batchWeightUnit; - - protected final List<String> comment = Lists.newArrayList(); - - public void setCruise(Cruise cruise) { - this.cruise = cruise; - } - - public void setFishingOperation(FishingOperation fishingOperation) { - this.fishingOperation = fishingOperation; - } - - public void setReferenceWeight(Float referenceWeight) { - this.referenceWeight = referenceWeight; - } - - public void setRaisingFactor(float raisingFactor) { - this.raisingFactor = raisingFactor; - } - - public void setBatchNumber(Integer batchNumber) { - this.batchNumber = batchNumber; - } - - public void addSampleCategory(ExportSampleCategory sampleCategory) { - int order = sampleCategory.getCategoryDef().getOrder(); - while (this.sampleCategory.size() <= order) { - this.sampleCategory.add(null); - } - this.sampleCategory.set(order, sampleCategory); - } - - public void setSpeciesFrequency(SpeciesBatchFrequency speciesFrequency) { - Preconditions.checkNotNull(speciesFrequency); - this.speciesFrequency = speciesFrequency; - this.batchNumber = speciesFrequency.getNumber(); - } - - public void setBenthosFrequency(BenthosBatchFrequency benthosFrequency) { - Preconditions.checkNotNull(benthosFrequency); - this.benthosFrequency = benthosFrequency; - this.batchNumber = benthosFrequency.getNumber(); - } - - public Date getBeginDate() { - return cruise.getBeginDate(); - } - - public Program getProgram() { - return cruise.getProgram(); - } - - public String getSurveyPart() { - return cruise.getSurveyPart(); - } - - public Vessel getVessel() { - return cruise.getVessel(); - } - - public String getStationNumber() { - return fishingOperation.getStationNumber(); - } - - public Integer getFishingOperationNumber() { - return fishingOperation.getFishingOperationNumber(); - } - - public Gear getGear() { - return fishingOperation.getGear(); - } - - public String getMultirigAggregation() { - return fishingOperation.getMultirigAggregation(); - } - - public Object getFrequency() { - return speciesFrequency == null ? benthosFrequency : speciesFrequency; - } - - public List<ExportSampleCategory> getSampleCategory() { - return sampleCategory; - } - - public Species getSpecies() { - return species; - } - - public void setSpecies(Species species) { - this.species = species; - } - - public Float getReferenceWeight() { - return referenceWeight; - } - - public float getRaisingFactor() { - return raisingFactor; - } - - public Integer getBatchNumber() { - return batchNumber; - } - - public String getBatchWeightUnit() { - return batchWeightUnit; - } - - public void setBatchWeightUnit(String batchWeightUnit) { - this.batchWeightUnit = batchWeightUnit; - } - - public CatchExportRow copy() { - CatchExportRow result = new CatchExportRow(); - result.setCruise(cruise); - result.setFishingOperation(fishingOperation); -// result.setSpeciesCategory(speciesCategory); - result.sampleCategory.addAll(sampleCategory); - if (benthosFrequency != null) { - result.setBenthosFrequency(benthosFrequency); - } - if (speciesFrequency != null) { - result.setSpeciesFrequency(speciesFrequency); - } - result.setSpecies(species); - result.setRaisingFactor(raisingFactor); - result.setReferenceWeight(referenceWeight); - result.setBatchNumber(batchNumber); - result.setBatchWeightUnit(batchWeightUnit); - result.comment.addAll(comment); - - return result; - } - - public void addComment(String comment) { - String safeComment = StringUtils.isEmpty(comment) ? "" : comment; - if (log.isDebugEnabled()) { - log.debug("Add comment: " + safeComment); - } - this.comment.add(safeComment); - } - - public void popLastComment() { - if (!comment.isEmpty()) { - this.comment.remove(this.comment.size() - 1); - } - } - - public String getComment() { - String result; - if (comment.isEmpty()) { - result = ""; - } else { - result = Joiner.on('|').join(comment); - } - return result; - } -} \ No newline at end of file Added: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ExportBatchEntry.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ExportBatchEntry.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ExportBatchEntry.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,53 @@ +package fr.ifremer.tutti.service.export; + +import fr.ifremer.tutti.persistence.entities.data.SpeciesAbleBatch; + +/** + * To store a species or batch entry within his speices informations, + * his sorted weight, total weight and percentage amoong the total catch + * weight. + * + * @since 2.10 + */ +public class ExportBatchEntry { + + protected final SpeciesAbleBatch batch; + + protected float sortedWeight; + + protected float totalWeight; + + protected int totalNumber; + + public ExportBatchEntry(SpeciesAbleBatch batch) { + this.batch = batch; + } + + public SpeciesAbleBatch getBatch() { + return batch; + } + + public void addSortedWeight(float weight) { + sortedWeight += weight; + } + + public void addTotalWeight(float weight) { + totalWeight += weight; + } + + public void addNumber(int number) { + totalNumber += number; + } + + public float getSortedWeight() { + return sortedWeight; + } + + public float getTotalWeight() { + return totalWeight; + } + + public int getTotalNumber() { + return totalNumber; + } +} Property changes on: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ExportBatchEntry.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision Added: svn:eol-style + native Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ExportSampleCategory.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ExportSampleCategory.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ExportSampleCategory.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,95 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.data.SampleCategory; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; - -import java.io.Serializable; - -/** - * Export sample category (extends {@link SampleCategory} to some computed - * stuff. - * - * @author tchemit <chemit@codelutin.com> - * @since 2.0 - */ -public class ExportSampleCategory<S extends Serializable> extends SampleCategory<S> { - - private static final long serialVersionUID = 1L; - - public static final String PROPERTY_CATEGORY_CARACTERISTIC = "categoryCaracteristic"; - - public static final String PROPERTY_CATEGORY_VALUE = "categoryValue"; - - public static final String PROPERTY_CATEGORY_WEIGHT = "categoryWeight"; - - public static final String PROPERTY_NUMBER = "number"; - - public static final String PROPERTY_COMPUTED_WEIGHT = "computedWeight"; - - public static final String PROPERTY_COMPUTED_NUMBER = "computedNumber"; - - public static final String PROPERTY_WEIGHT_OR_VOL_TYPE = "weightOrVolType"; - - public static final String PROPERTY_RANK_ORDER = "rankOrder"; - - public static final String PROPERTY_SAMPLE_WEIGHT = "sampleWeight"; - - private Integer rankOrder; - - private String weightOrVolType; - - private Float sampleWeight; - - public String getWeightOrVolType() { - return weightOrVolType; - } - - public void setWeightOrVolType(String weightOrVolType) { - this.weightOrVolType = weightOrVolType; - } - - public Integer getRankOrder() { - return rankOrder; - } - - public void setRankOrder(Integer rankOrder) { - this.rankOrder = rankOrder; - } - - public Float getSampleWeight() { - return sampleWeight; - } - - public void setSampleWeight(Float sampleWeight) { - this.sampleWeight = sampleWeight; - } - - public Caracteristic getCategoryCaracteristic() { - return categoryDef.getCaracteristic(); - } - -} Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/GearCaracteristicExportModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/GearCaracteristicExportModel.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/GearCaracteristicExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,76 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.CaracteristicMap; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.Gear; -import fr.ifremer.tutti.service.DecoratorService; -import fr.ifremer.tutti.service.TuttiCsvUtil; - -import java.io.Serializable; -import java.util.List; -import java.util.Map; - -/** - * To export gear caracteristics. - * - * @author tchemit <chemit@codelutin.com> - * @since 2.3.2 - */ -public class GearCaracteristicExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<GearCaracteristicExportRow> { - - public GearCaracteristicExportModel(char separator, DecoratorService decoratorService) { - super(separator); - - newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); - newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); - newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); - newColumnForExport("Engin", GearCaracteristicExportRow.PROPERTY_GEAR, Gear.PROPERTY_NAME); - newColumnForExport("Code_PMFM", GearCaracteristicExportRow.PROPERTY_CARACTERISTIC, Caracteristic.PROPERTY_ID); - newColumnForExportByDecorator("Libelle_PMFM", GearCaracteristicExportRow.PROPERTY_CARACTERISTIC, decoratorService.getDecoratorByType(Caracteristic.class)); - newColumnForExport("Valeur", GearCaracteristicExportRow.PROPERTY_VALUE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); - } - - public void prepareRows(List<GearCaracteristicExportRow> rows, Cruise cruise, - Gear gear) { - CaracteristicMap caracteristics = gear.getCaracteristics(); - if (caracteristics != null) { - for (Map.Entry<Caracteristic, Serializable> entry : caracteristics.entrySet()) { - Caracteristic caracteristic = entry.getKey(); - Serializable value = entry.getValue(); - GearCaracteristicExportRow row = new GearCaracteristicExportRow(); - row.setCruise(cruise); - row.setGear(gear); - row.setCaracteristic(caracteristic); - row.setValue(value); - rows.add(row); - } - } - } - -} \ No newline at end of file Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/GearCaracteristicExportRow.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/GearCaracteristicExportRow.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/GearCaracteristicExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,98 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.Gear; - -import java.io.Serializable; -import java.util.Date; - -/** - * A row in a gear caracteristics export. - * - * @author tchemit <chemit@codelutin.com> - * @since 2.3.2 - */ -public class GearCaracteristicExportRow implements Serializable { - - private static final long serialVersionUID = 1L; - - public static final String PROPERTY_GEAR = "gear"; - - public static final String PROPERTY_CARACTERISTIC = "caracteristic"; - - public static final String PROPERTY_VALUE = "value"; - - protected Cruise cruise; - - protected Gear gear; - - protected Caracteristic caracteristic; - - private Serializable value; - - public void setCruise(Cruise cruise) { - this.cruise = cruise; - } - - public void setGear(Gear gear) { - this.gear = gear; - } - - public void setCaracteristic(Caracteristic caracteristic) { - this.caracteristic = caracteristic; - } - - public void setValue(Serializable value) { - this.value = value; - } - - public Date getBeginDate() { - return cruise.getBeginDate(); - } - - public Program getProgram() { - return cruise.getProgram(); - } - - public String getSurveyPart() { - return cruise.getSurveyPart(); - } - - public Gear getGear() { - return gear; - } - - public Caracteristic getCaracteristic() { - return caracteristic; - } - - public Serializable getValue() { - return value; - } -} Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/IndividualObservationExportModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/IndividualObservationExportModel.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/IndividualObservationExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,170 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.CaracteristicMap; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.IndividualObservationBatch; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.Gear; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.service.PersistenceService; -import fr.ifremer.tutti.service.TuttiCsvUtil; -import org.apache.commons.collections.CollectionUtils; -import org.apache.commons.collections.MapUtils; - -import java.io.Serializable; -import java.util.List; -import java.util.Map; - -/** - * Model of a individual observation export. - * - * @author tchemit <chemit@codelutin.com> - * @since 2.0.1 - */ -public class IndividualObservationExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<IndividualObservationExportRow> { - -// protected final Caracteristic caracteristicSample; -// -// protected final Caracteristic caracteristicOtolithe; - - protected final Caracteristic caracteristicWeight; - - protected final Caracteristic caracteristicPmfmId; - - public IndividualObservationExportModel( - char separator, -// Caracteristic caracteristicSample, -// Caracteristic caracteristicOtolithe, - Caracteristic caracteristicWeight, - Caracteristic caracteristicPmfmId) { - super(separator); - -// this.caracteristicSample = caracteristicSample; -// this.caracteristicOtolithe = caracteristicOtolithe; - this.caracteristicWeight = caracteristicWeight; - this.caracteristicPmfmId = caracteristicPmfmId; - - newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); - newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); - newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); - newNullableColumnForExport("Engin", FishingOperation.PROPERTY_GEAR + "." + Gear.PROPERTY_NAME); - newColumnForExport("Code_station", FishingOperation.PROPERTY_STATION_NUMBER); - newColumnForExport("Numero_Trait", FishingOperation.PROPERTY_FISHING_OPERATION_NUMBER, TuttiCsvUtil.INTEGER); - newColumnForExport("Poche", FishingOperation.PROPERTY_MULTIRIG_AGGREGATION); - newColumnForExport("Navire", Cruise.PROPERTY_VESSEL, TuttiCsvUtil.VESSEL_VALUE_FORMATTER); - - newColumnForExport("BatchId", IndividualObservationExportRow.PROPERTY_BATCH_ID, TuttiCsvUtil.PRIMITIVE_INTEGER); - newColumnForExport("ReferenceTaxonId", IndividualObservationBatch.PROPERTY_SPECIES + "." + Species.PROPERTY_REFERENCE_TAXON_ID, TuttiCsvUtil.PRIMITIVE_INTEGER); - newColumnForExport("ReferenceTaxonName", IndividualObservationBatch.PROPERTY_SPECIES + "." + Species.PROPERTY_NAME); - newColumnForExport("Commentaire", IndividualObservationBatch.PROPERTY_COMMENT); - newColumnForExport("CaracteristicId", IndividualObservationExportRow.PROPERTY_CARACTERISTIC, Caracteristic.PROPERTY_ID); - newColumnForExport("CaracteristicValue", IndividualObservationExportRow.PROPERTY_CARACTERISTIC_VALUE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); - } - - public void prepareRows(PersistenceService persistenceService, - List<IndividualObservationExportRow> rows, - Cruise cruise, - FishingOperation operation) { - - List<IndividualObservationBatch> observations = - persistenceService.getAllIndividualObservationBatch(operation.getId()); - - if (CollectionUtils.isNotEmpty(observations)) { - for (IndividualObservationBatch child : observations) { - -// addCaracteristicRow(rows, -// cruise, -// operation, -// child, -// caracteristicSample, -// child.getSamplingCode()); -// -// addCaracteristicRow(rows, -// cruise, -// operation, -// child, -// caracteristicOtolithe, -// child.getCalcifiedPieceSamplingCode()); - - addCaracteristicRow(rows, - cruise, - operation, - child, - caracteristicWeight, - child.getWeight()); - - if (child.getLengthStepCaracteristic() != null) { - addCaracteristicRow(rows, - cruise, - operation, - child, - caracteristicPmfmId, - child.getLengthStepCaracteristic().getIdAsInt()); - - addCaracteristicRow(rows, - cruise, - operation, - child, - child.getLengthStepCaracteristic(), - child.getSize()); - } - - CaracteristicMap caracteristics = child.getCaracteristics(); - if (MapUtils.isNotEmpty(caracteristics)) { - for (Map.Entry<Caracteristic, Serializable> entry : caracteristics.entrySet()) { - addCaracteristicRow(rows, - cruise, - operation, - child, - entry.getKey(), - entry.getValue()); - } - } - } - } - } - - private void addCaracteristicRow(List<IndividualObservationExportRow> rows, - Cruise cruise, - FishingOperation operation, - IndividualObservationBatch child, - Caracteristic caracteristic, - Serializable caracteristicValue) { - if (caracteristicValue != null) { - - IndividualObservationExportRow row = new IndividualObservationExportRow(); - row.setCruise(cruise); - row.setFishingOperation(operation); - row.setBatch(child); - row.setCaracteristic(caracteristic); - row.setCaracteristicValue(caracteristicValue); - rows.add(row); - } - } -} Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/IndividualObservationExportRow.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/IndividualObservationExportRow.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/IndividualObservationExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,138 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.IndividualObservationBatch; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.Gear; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.persistence.entities.referential.Vessel; - -import java.io.Serializable; -import java.util.Date; - -/** - * A row in a individual observation export. - * - * @author tchemit <chemit@codelutin.com> - * @since 2.0.1 - */ -public class IndividualObservationExportRow implements Serializable { - - public static final String PROPERTY_BATCH = "batch"; - - private static final long serialVersionUID = 1L; - - public static final String PROPERTY_BATCH_ID = "batchId"; - - public static final String PROPERTY_CARACTERISTIC = "caracteristic"; - - public static final String PROPERTY_CARACTERISTIC_VALUE = "caracteristicValue"; - - protected Cruise cruise; - - protected FishingOperation fishingOperation; - - protected IndividualObservationBatch batch; - - protected Caracteristic caracteristic; - - protected Serializable caracteristicValue; - - public void setCruise(Cruise cruise) { - this.cruise = cruise; - } - - public void setFishingOperation(FishingOperation fishingOperation) { - this.fishingOperation = fishingOperation; - } - - public void setBatch(IndividualObservationBatch batch) { - this.batch = batch; - } - - public void setCaracteristic(Caracteristic caracteristic) { - this.caracteristic = caracteristic; - } - - public void setCaracteristicValue(Serializable caracteristicValue) { - this.caracteristicValue = caracteristicValue; - } - - public Integer getBatchId() { - return batch.getIdAsInt(); - } - - public Caracteristic getCaracteristic() { - return caracteristic; - } - - public Serializable getCaracteristicValue() { - return caracteristicValue; - } - - public String getComment() { - return batch.getComment(); - } - - public Date getBeginDate() { - return cruise.getBeginDate(); - } - - public Program getProgram() { - return cruise.getProgram(); - } - - public String getSurveyPart() { - return cruise.getSurveyPart(); - } - - public String getStationNumber() { - return fishingOperation.getStationNumber(); - } - - public Integer getFishingOperationNumber() { - return fishingOperation.getFishingOperationNumber(); - } - - public Gear getGear() { - return fishingOperation.getGear(); - } - - public Vessel getVessel() { - return fishingOperation.getVessel(); - } - - public String getMultirigAggregation() { - return fishingOperation.getMultirigAggregation(); - } - - public Species getSpecies() { - return batch.getSpecies(); - } -} Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/MarineLitterExportModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/MarineLitterExportModel.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/MarineLitterExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,86 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.data.BatchContainer; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.MarineLitterBatch; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.referential.Gear; -import fr.ifremer.tutti.persistence.entities.referential.Vessel; -import fr.ifremer.tutti.service.PersistenceService; -import fr.ifremer.tutti.service.TuttiCsvUtil; -import org.apache.commons.collections.CollectionUtils; - -import java.util.List; - -/** - * Model of a marine litter export. - * - * @author tchemit <chemit@codelutin.com> - * @since 2.0.1 - */ -public class MarineLitterExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<MarineLitterExportRow> { - - public MarineLitterExportModel(char separator) { - super(separator); - - newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); - newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); - newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); - newNullableColumnForExport("Engin", FishingOperation.PROPERTY_GEAR + "." + Gear.PROPERTY_NAME); - newColumnForExport("Code_station", FishingOperation.PROPERTY_STATION_NUMBER); - newColumnForExport("Numero_Trait", FishingOperation.PROPERTY_FISHING_OPERATION_NUMBER, TuttiCsvUtil.INTEGER); - newColumnForExport("Poche", FishingOperation.PROPERTY_MULTIRIG_AGGREGATION); - newColumnForExport("Navire", Cruise.PROPERTY_VESSEL, TuttiCsvUtil.VESSEL_VALUE_FORMATTER); - - newColumnForExport("MarineLitterCategory", MarineLitterBatch.PROPERTY_MARINE_LITTER_CATEGORY, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); - newColumnForExport("MarineLitterSizeCategory", MarineLitterBatch.PROPERTY_MARINE_LITTER_SIZE_CATEGORY, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); - newColumnForExport("Number", MarineLitterBatch.PROPERTY_NUMBER, TuttiCsvUtil.INTEGER); - newColumnForExport("Weight", MarineLitterBatch.PROPERTY_WEIGHT, TuttiCsvUtil.FLOAT); - newColumnForExport("Commentaire", MarineLitterBatch.PROPERTY_COMMENT); - } - - public void prepareRows(PersistenceService persistenceService, - List<MarineLitterExportRow> rows, - Cruise cruise, - FishingOperation operation) { - - BatchContainer<MarineLitterBatch> rootMarineLitterBatch = - persistenceService.getRootMarineLitterBatch(operation.getId()); - - List<MarineLitterBatch> children = rootMarineLitterBatch.getChildren(); - if (CollectionUtils.isNotEmpty(children)) { - for (MarineLitterBatch child : children) { - MarineLitterExportRow row = new MarineLitterExportRow(); - row.setCruise(cruise); - row.setFishingOperation(operation); - row.setBatch(child); - rows.add(row); - } - } - } -} Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/MarineLitterExportRow.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/MarineLitterExportRow.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/MarineLitterExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,121 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.MarineLitterBatch; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; -import fr.ifremer.tutti.persistence.entities.referential.Gear; -import fr.ifremer.tutti.persistence.entities.referential.Vessel; - -import java.io.Serializable; -import java.util.Date; - -/** - * A row in a marine litter export. - * - * @author tchemit <chemit@codelutin.com> - * @since 2.0.1 - */ -public class MarineLitterExportRow implements Serializable { - - public static final String PROPERTY_TOTAL_WEIGHT = "totalWeight"; - - public static final String PROPERTY_BATCH = "batch"; - - private static final long serialVersionUID = 1L; - - protected Cruise cruise; - - protected FishingOperation fishingOperation; - - protected MarineLitterBatch batch; - - public void setCruise(Cruise cruise) { - this.cruise = cruise; - } - - public void setFishingOperation(FishingOperation fishingOperation) { - this.fishingOperation = fishingOperation; - } - - public void setBatch(MarineLitterBatch batch) { - this.batch = batch; - } - - public CaracteristicQualitativeValue getMarineLitterCategory() { - return batch.getMarineLitterCategory(); - } - - public CaracteristicQualitativeValue getMarineLitterSizeCategory() { - return batch.getMarineLitterSizeCategory(); - } - - public Integer getNumber() { - return batch.getNumber(); - } - - public Float getWeight() { - return batch.getWeight(); - } - - public String getComment() { - return batch.getComment(); - } - - public Date getBeginDate() { - return cruise.getBeginDate(); - } - - public Program getProgram() { - return cruise.getProgram(); - } - - public String getSurveyPart() { - return cruise.getSurveyPart(); - } - - public String getStationNumber() { - return fishingOperation.getStationNumber(); - } - - public Integer getFishingOperationNumber() { - return fishingOperation.getFishingOperationNumber(); - } - - public Gear getGear() { - return fishingOperation.getGear(); - } - - public Vessel getVessel() { - return fishingOperation.getVessel(); - } - - public String getMultirigAggregation() { - return fishingOperation.getMultirigAggregation(); - } -} Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/OperationExportModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/OperationExportModel.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/OperationExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,166 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.Gear; -import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; -import fr.ifremer.tutti.persistence.entities.referential.Vessel; -import fr.ifremer.tutti.service.TuttiCsvUtil; -import org.nuiton.decorator.Decorator; - -import java.util.List; - -/** - * Model of a operation export. - * - * @author tchemit <chemit@codelutin.com> - * @since 1.3 - */ -public class OperationExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<OperationExportRow> { - - - protected final Caracteristic verticalOpeningCaracteristic; - - protected final Caracteristic horizontalOpeningWingCaracteristic; - - protected final Caracteristic horizontalOpeningDoorCaracteristic; - - public OperationExportModel(char separator, - Caracteristic verticalOpeningCaracteristic, - Caracteristic horizontalOpeningWingCaracteristic, - Caracteristic horizontalOpeningDoorCaracteristic, - Decorator<Vessel> vesselDecorator) { - super(separator); - this.verticalOpeningCaracteristic = verticalOpeningCaracteristic; - this.horizontalOpeningWingCaracteristic = horizontalOpeningWingCaracteristic; - this.horizontalOpeningDoorCaracteristic = horizontalOpeningDoorCaracteristic; - newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); - newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); - newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); - newColumnForExport("Code_Station", FishingOperation.PROPERTY_STATION_NUMBER); - newColumnForExport("Numero_Trait", FishingOperation.PROPERTY_FISHING_OPERATION_NUMBER, TuttiCsvUtil.INTEGER); - newColumnForExport("Poche", FishingOperation.PROPERTY_MULTIRIG_AGGREGATION); - - newNullableColumnForExport("Engin", FishingOperation.PROPERTY_GEAR + "." + Gear.PROPERTY_NAME); - newColumnForExport("Navire", FishingOperation.PROPERTY_VESSEL, TuttiCsvUtil.VESSEL_VALUE_FORMATTER); - newColumnForExport("DateDeb_Op", FishingOperation.PROPERTY_GEAR_SHOOTING_START_DATE, TuttiCsvUtil.DAY_TIME_SECOND); - newColumnForExport("LatDeb", FishingOperation.PROPERTY_GEAR_SHOOTING_START_LATITUDE, TuttiCsvUtil.FLOAT); - newColumnForExport("LongDeb", FishingOperation.PROPERTY_GEAR_SHOOTING_START_LONGITUDE, TuttiCsvUtil.FLOAT); - newColumnForExport("DateFin_Op", FishingOperation.PROPERTY_GEAR_SHOOTING_END_DATE, TuttiCsvUtil.DAY_TIME_SECOND); - newColumnForExport("LatFin", FishingOperation.PROPERTY_GEAR_SHOOTING_END_LATITUDE, TuttiCsvUtil.FLOAT); - newColumnForExport("LongFin", FishingOperation.PROPERTY_GEAR_SHOOTING_END_LONGITUDE, TuttiCsvUtil.FLOAT); - newColumnForExport("Duree", OperationExportRow.PROPERTY_DURATION); - newColumnForExport("Strate", FishingOperation.PROPERTY_STRATA, TuttiLocation.PROPERTY_NAME, "NA"); - newColumnForExport("Sous-Strate", FishingOperation.PROPERTY_SUB_STRATA, TuttiLocation.PROPERTY_NAME, "NA"); - newColumnForExport("Localite", FishingOperation.PROPERTY_LOCATION, TuttiLocation.PROPERTY_NAME, "NA"); - newColumnForExport("Validite_OP", FishingOperation.PROPERTY_FISHING_OPERATION_VALID, TuttiCsvUtil.BOOLEAN); - newColumnForExport("Rectiligne", FishingOperation.PROPERTY_FISHING_OPERATION_RECTILIGNE, TuttiCsvUtil.BOOLEAN); - newColumnForExport("Distance", FishingOperation.PROPERTY_TRAWL_DISTANCE, TuttiCsvUtil.FLOAT); - newColumnForExport("Ouv_Verticale", OperationExportRow.PROPERTY_VERTICAL_OPENING_GEAR_USE_FEATURE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); - newColumnForExport("Ouv_Horizontale_Ailes", OperationExportRow.PROPERTY_HORIZONTAL_OPENING_WING_GEAR_USE_FEATURE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); - newColumnForExport("Ouv_Horizontale_Panneaux", OperationExportRow.PROPERTY_HORIZONTAL_OPENING_DOOR_GEAR_USE_FEATURE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); - newColumnForExport("Saisisseur", FishingOperation.PROPERTY_RECORDER_PERSON, TuttiCsvUtil.LIST_PERSON_FORMATTER); - newColumnForExport("NavireAssocie", FishingOperation.PROPERTY_SECONDARY_VESSEL, TuttiCsvUtil.newListVesselFormatter(vesselDecorator)); - newColumnForExport("Commentaire", FishingOperation.PROPERTY_COMMENT); - - newNullableColumnForExport("Poids_Total", OperationExportRow.PROPERTY_CATCH_TOTAL_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Calcule", OperationExportRow.PROPERTY_CATCH_TOTAL_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Vrac", OperationExportRow.PROPERTY_CATCH_TOTAL_SORTED_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Vrac_Calcule", OperationExportRow.PROPERTY_CATCH_TOTAL_SORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_HorsVrac", OperationExportRow.PROPERTY_CATCH_TOTAL_UNSORTED_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_HorsVrac_Calcule", OperationExportRow.PROPERTY_CATCH_TOTAL_UNSORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Non_Trie", OperationExportRow.PROPERTY_CATCH_TOTAL_REJECTED_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Non_Trie_Calcule", OperationExportRow.PROPERTY_CATCH_TOTAL_REJECTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Tremis", OperationExportRow.PROPERTY_CATCH_TOTAL_SORTED_TREMIS_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Tremis_Calcule", OperationExportRow.PROPERTY_CATCH_TOTAL_SORTED_TREMIS_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Carroussel", OperationExportRow.PROPERTY_CATCH_TOTAL_SORTED_CAROUSSEL_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Carroussel_Calcule", OperationExportRow.PROPERTY_CATCH_TOTAL_SORTED_CAROUSSEL_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Espece", OperationExportRow.PROPERTY_SPECIES_TOTAL_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Espece_Calcule", OperationExportRow.PROPERTY_SPECIES_TOTAL_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Espece_Vrac", OperationExportRow.PROPERTY_SPECIES_TOTAL_SORTED_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Espece_Vrac_Calcule", OperationExportRow.PROPERTY_SPECIES_TOTAL_SORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Espece_Vrac_Trie", OperationExportRow.PROPERTY_SPECIES_TOTAL_SAMPLE_SORTED_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Espece_Vrac_Trie_Calcule", OperationExportRow.PROPERTY_SPECIES_TOTAL_SAMPLE_SORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Espece_HorsVrac", OperationExportRow.PROPERTY_SPECIES_TOTAL_UNSORTED_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Espece_HorsVrac_Calcule", OperationExportRow.PROPERTY_SPECIES_TOTAL_UNSORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Espece_Inerte_Trie", OperationExportRow.PROPERTY_SPECIES_TOTAL_INERT_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Espece_Inerte_Trie_Calcule", OperationExportRow.PROPERTY_SPECIES_TOTAL_INERT_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Espece_Vivant_non_detaille_trie", OperationExportRow.PROPERTY_SPECIES_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Espece_Vivant_non_detaille_trie_Calcule", OperationExportRow.PROPERTY_SPECIES_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Benthos", OperationExportRow.PROPERTY_BENTHOS_TOTAL_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Benthos_Calcule", OperationExportRow.PROPERTY_BENTHOS_TOTAL_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Benthos_Vrac", OperationExportRow.PROPERTY_BENTHOS_TOTAL_SORTED_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Benthos_Vrac_Calcule", OperationExportRow.PROPERTY_BENTHOS_TOTAL_SORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Benthos_Vrac_Trie", OperationExportRow.PROPERTY_BENTHOS_TOTAL_SAMPLE_SORTED_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Benthos_Vrac_Trie_Calcule", OperationExportRow.PROPERTY_BENTHOS_TOTAL_SAMPLE_SORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Benthos_HorsVrac", OperationExportRow.PROPERTY_BENTHOS_TOTAL_UNSORTED_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Benthos_HorsVrac_Calcule", OperationExportRow.PROPERTY_BENTHOS_TOTAL_UNSORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Benthos_Inerte_Trie", OperationExportRow.PROPERTY_BENTHOS_TOTAL_INERT_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Benthos_Inerte_Trie_Calcule", OperationExportRow.PROPERTY_BENTHOS_TOTAL_INERT_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Benthos_Vivant_non_detaille_trie", OperationExportRow.PROPERTY_BENTHOS_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Benthos_Vivant_non_detaille_trie_Calcule", OperationExportRow.PROPERTY_BENTHOS_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - - newNullableColumnForExport("Poids_Total_Macro_Dechet", OperationExportRow.PROPERTY_MARINE_LITTER_TOTAL_WEIGHT, TuttiCsvUtil.FLOAT); - newNullableColumnForExport("Poids_Total_Macro_Dechet_Calcule", OperationExportRow.PROPERTY_MARINE_LITTER_TOTAL_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); - } - - public void prepareRows(List<OperationExportRow> rows, - Cruise cruise, - FishingOperation operation, - CatchBatch catchBatch) { - - OperationExportRow row = new OperationExportRow( - verticalOpeningCaracteristic, - horizontalOpeningWingCaracteristic, - horizontalOpeningDoorCaracteristic); - row.setCruise(cruise); - row.setFishingOperation(operation); - row.setCatchBatch(catchBatch); - rows.add(row); - - } -} \ No newline at end of file Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/OperationExportRow.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/OperationExportRow.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/OperationExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,499 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.CaracteristicMap; -import fr.ifremer.tutti.persistence.entities.TuttiEntities; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.Gear; -import fr.ifremer.tutti.persistence.entities.referential.Person; -import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; -import fr.ifremer.tutti.persistence.entities.referential.Vessel; - -import java.io.Serializable; -import java.util.Date; -import java.util.List; - -/** - * A row in a operation export. - * - * @author tchemit <chemit@codelutin.com> - * @since 1.3 - */ -public class OperationExportRow implements Serializable { - - public static final String PROPERTY_DURATION = "duration"; - - public static final String PROPERTY_VERTICAL_OPENING_GEAR_USE_FEATURE = "verticalOpeningGearUseFeature"; - - public static final String PROPERTY_HORIZONTAL_OPENING_WING_GEAR_USE_FEATURE = "horizontalOpeningWingGearUseFeature"; - - public static final String PROPERTY_HORIZONTAL_OPENING_DOOR_GEAR_USE_FEATURE = "horizontalOpeningDoorGearUseFeature"; - - public static final String PROPERTY_CATCH_TOTAL_WEIGHT = "catchTotalWeight"; - - public static final String PROPERTY_CATCH_TOTAL_WEIGHT_COMPUTED = "catchTotalWeightComputed"; - - public static final String PROPERTY_CATCH_TOTAL_SORTED_TREMIS_WEIGHT = "catchTotalSortedTremisWeight"; - - public static final String PROPERTY_CATCH_TOTAL_SORTED_TREMIS_WEIGHT_COMPUTED = "catchTotalSortedTremisWeightComputed"; - - public static final String PROPERTY_CATCH_TOTAL_SORTED_CAROUSSEL_WEIGHT = "catchTotalSortedCarousselWeight"; - - public static final String PROPERTY_CATCH_TOTAL_SORTED_CAROUSSEL_WEIGHT_COMPUTED = "catchTotalSortedCarousselWeightComputed"; - - public static final String PROPERTY_CATCH_TOTAL_SORTED_WEIGHT = "catchTotalSortedWeight"; - - public static final String PROPERTY_CATCH_TOTAL_SORTED_WEIGHT_COMPUTED = "catchTotalSortedWeightComputed"; - - public static final String PROPERTY_CATCH_TOTAL_UNSORTED_WEIGHT = "catchTotalUnsortedWeight"; - - public static final String PROPERTY_CATCH_TOTAL_UNSORTED_WEIGHT_COMPUTED = "catchTotalUnsortedWeightComputed"; - - public static final String PROPERTY_CATCH_TOTAL_REJECTED_WEIGHT = "catchTotalRejectedWeight"; - - public static final String PROPERTY_CATCH_TOTAL_REJECTED_WEIGHT_COMPUTED = "catchTotalRejectedWeightComputed"; - - - public static final String PROPERTY_SPECIES_TOTAL_WEIGHT = "speciesTotalWeight"; - - public static final String PROPERTY_SPECIES_TOTAL_WEIGHT_COMPUTED = "speciesTotalWeightComputed"; - - public static final String PROPERTY_SPECIES_TOTAL_SORTED_WEIGHT = "speciesTotalSortedWeight"; - - public static final String PROPERTY_SPECIES_TOTAL_SORTED_WEIGHT_COMPUTED = "speciesTotalSortedWeightComputed"; - - public static final String PROPERTY_SPECIES_TOTAL_UNSORTED_WEIGHT = "speciesTotalUnsortedWeight"; - - public static final String PROPERTY_SPECIES_TOTAL_UNSORTED_WEIGHT_COMPUTED = "speciesTotalUnsortedWeightComputed"; - - public static final String PROPERTY_SPECIES_TOTAL_SAMPLE_SORTED_WEIGHT = "speciesTotalSampleSortedWeight"; - - public static final String PROPERTY_SPECIES_TOTAL_SAMPLE_SORTED_WEIGHT_COMPUTED = "speciesTotalSampleSortedWeightComputed"; - - public static final String PROPERTY_SPECIES_TOTAL_INERT_WEIGHT = "speciesTotalInertWeight"; - - public static final String PROPERTY_SPECIES_TOTAL_INERT_WEIGHT_COMPUTED = "speciesTotalInertWeightComputed"; - - public static final String PROPERTY_SPECIES_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT = "speciesTotalLivingNotItemizedWeight"; - - public static final String PROPERTY_SPECIES_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT_COMPUTED = "speciesTotalLivingNotItemizedWeightComputed"; - - public static final String PROPERTY_BENTHOS_TOTAL_WEIGHT = "benthosTotalWeight"; - - public static final String PROPERTY_BENTHOS_TOTAL_WEIGHT_COMPUTED = "benthosTotalWeightComputed"; - - public static final String PROPERTY_BENTHOS_TOTAL_SORTED_WEIGHT = "benthosTotalSortedWeight"; - - public static final String PROPERTY_BENTHOS_TOTAL_SORTED_WEIGHT_COMPUTED = "benthosTotalSortedWeightComputed"; - - public static final String PROPERTY_BENTHOS_TOTAL_UNSORTED_WEIGHT = "benthosTotalUnsortedWeight"; - - public static final String PROPERTY_BENTHOS_TOTAL_UNSORTED_WEIGHT_COMPUTED = "benthosTotalUnsortedWeightComputed"; - - public static final String PROPERTY_BENTHOS_TOTAL_SAMPLE_SORTED_WEIGHT = "benthosTotalSampleSortedWeight"; - - public static final String PROPERTY_BENTHOS_TOTAL_SAMPLE_SORTED_WEIGHT_COMPUTED = "benthosTotalSampleSortedWeightComputed"; - - public static final String PROPERTY_BENTHOS_TOTAL_INERT_WEIGHT = "benthosTotalInertWeight"; - - public static final String PROPERTY_BENTHOS_TOTAL_INERT_WEIGHT_COMPUTED = "benthosTotalInertWeightComputed"; - - public static final String PROPERTY_BENTHOS_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT = "benthosTotalLivingNotItemizedWeight"; - - public static final String PROPERTY_BENTHOS_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT_COMPUTED = "benthosTotalLivingNotItemizedWeightComputed"; - - public static final String PROPERTY_MARINE_LITTER_TOTAL_WEIGHT = "marineLitterTotalWeight"; - - public static final String PROPERTY_MARINE_LITTER_TOTAL_WEIGHT_COMPUTED = "marineLitterTotalWeightComputed"; - - private static final long serialVersionUID = 1L; - - protected Cruise cruise; - - protected FishingOperation fishingOperation; - - protected CatchBatch catchBatch; - - private Caracteristic verticalOpeningCaracteristic; - - private Caracteristic horizontalOpeningWingCaracteristic; - - private Caracteristic horizontalOpeningDoorCaracteristic; - - public OperationExportRow(Caracteristic verticalOpeningCaracteristic, - Caracteristic horizontalOpeningWingCaracteristic, - Caracteristic horizontalOpeningDoorCaracteristic) { - - this.verticalOpeningCaracteristic = verticalOpeningCaracteristic; - this.horizontalOpeningWingCaracteristic = horizontalOpeningWingCaracteristic; - this.horizontalOpeningDoorCaracteristic = horizontalOpeningDoorCaracteristic; - } - - public void setCruise(Cruise cruise) { - this.cruise = cruise; - } - - public void setFishingOperation(FishingOperation fishingOperation) { - this.fishingOperation = fishingOperation; - } - - public void setCatchBatch(CatchBatch catchBatch) { - this.catchBatch = catchBatch; - } - - public Date getBeginDate() { - return cruise.getBeginDate(); - } - - public Program getProgram() { - return cruise.getProgram(); - } - - public String getSurveyPart() { - return cruise.getSurveyPart(); - } - - public String getStationNumber() { - return fishingOperation.getStationNumber(); - } - - public Integer getFishingOperationNumber() { - return fishingOperation.getFishingOperationNumber(); - } - - public String getMultirigAggregation() { - return fishingOperation.getMultirigAggregation(); - } - - public Gear getGear() { - return fishingOperation.getGear(); - } - - public Vessel getVessel() { - return fishingOperation.getVessel(); - } - - public Date getGearShootingStartDate() { - return fishingOperation.getGearShootingStartDate(); - } - - public Float getGearShootingStartLatitude() { - return fishingOperation.getGearShootingStartLatitude(); - } - - public Float getGearShootingStartLongitude() { - return fishingOperation.getGearShootingStartLongitude(); - } - - public Date getGearShootingEndDate() { - return fishingOperation.getGearShootingEndDate(); - } - - public Float getGearShootingEndLatitude() { - return fishingOperation.getGearShootingEndLatitude(); - } - - public Float getGearShootingEndLongitude() { - return fishingOperation.getGearShootingEndLongitude(); - } - - public TuttiLocation getStrata() { - return fishingOperation.getStrata(); - } - - public TuttiLocation getSubStrata() { - return fishingOperation.getSubStrata(); - } - - public TuttiLocation getLocation() { - return fishingOperation.getLocation(); - } - - public Boolean getFishingOperationValid() { - return fishingOperation.getFishingOperationValid(); - } - - public boolean isFishingOperationRectiligne() { - return fishingOperation.isFishingOperationRectiligne(); - } - - public Float getTrawlDistance() { - return fishingOperation.getTrawlDistance(); - } - - public String getComment() { - return fishingOperation.getComment(); - } - - public List<Person> getRecorderPerson() { - return fishingOperation.getRecorderPerson(); - } - - public List<Vessel> getSecondaryVessel() { - return fishingOperation.getSecondaryVessel(); - } - - public String getDuration() { - return TuttiEntities.getDuration( - getGearShootingStartDate(), - getGearShootingEndDate(), - "mm"); - } - - public Serializable getVerticalOpeningGearUseFeature() { - Serializable result = getGearUseFeature(verticalOpeningCaracteristic); - return result; - } - - public Serializable getHorizontalOpeningWingGearUseFeature() { - Serializable result = getGearUseFeature(horizontalOpeningWingCaracteristic); - return result; - } - - public Serializable getHorizontalOpeningDoorGearUseFeature() { - Serializable result = getGearUseFeature(horizontalOpeningDoorCaracteristic); - return result; - } - - public Float getCatchTotalWeight() { - return TuttiEntities.getValueOrComputedValue( - catchBatch.getCatchTotalWeight(), - catchBatch.getCatchTotalComputedWeight()); - } - - public Boolean getCatchTotalWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - catchBatch.getCatchTotalWeight(), - catchBatch.getCatchTotalComputedWeight()); - } - - public Float getCatchTotalSortedTremisWeight() { - return TuttiEntities.getValueOrComputedValue( - catchBatch.getCatchTotalSortedTremisWeight(), null); - } - - public Boolean getCatchTotalSortedTremisWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - catchBatch.getCatchTotalSortedTremisWeight(), null); - } - - public Float getCatchTotalSortedCarousselWeight() { - return TuttiEntities.getValueOrComputedValue( - catchBatch.getCatchTotalSortedCarousselWeight(), null); - } - - public Boolean getCatchTotalSortedCarousselWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - catchBatch.getCatchTotalSortedCarousselWeight(), null); - } - - public Float getCatchTotalSortedWeight() { - return TuttiEntities.getValueOrComputedValue( - null, catchBatch.getCatchTotalSortedComputedWeight()); - } - - public Boolean getCatchTotalSortedWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - null, catchBatch.getCatchTotalSortedComputedWeight()); - } - - public Float getCatchTotalUnsortedWeight() { - return TuttiEntities.getValueOrComputedValue( - null, catchBatch.getCatchTotalUnsortedComputedWeight()); - } - - public Boolean getCatchTotalUnsortedWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - null, catchBatch.getCatchTotalUnsortedComputedWeight()); - } - - public Float getCatchTotalRejectedWeight() { - return TuttiEntities.getValueOrComputedValue( - catchBatch.getCatchTotalRejectedWeight(), - catchBatch.getCatchTotalRejectedComputedWeight()); - } - - public Boolean getCatchTotalRejectedWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - catchBatch.getCatchTotalRejectedWeight(), - catchBatch.getCatchTotalRejectedComputedWeight()); - } - - public Float getSpeciesTotalWeight() { - return TuttiEntities.getValueOrComputedValue( - null, catchBatch.getSpeciesTotalComputedWeight()); - } - - public Boolean getSpeciesTotalWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - null, catchBatch.getSpeciesTotalComputedWeight()); - } - - public Float getSpeciesTotalSortedWeight() { - return TuttiEntities.getValueOrComputedValue( - catchBatch.getSpeciesTotalSortedWeight(), - catchBatch.getSpeciesTotalSortedComputedWeight()); - } - - public Boolean getSpeciesTotalSortedWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - catchBatch.getSpeciesTotalSortedWeight(), - catchBatch.getSpeciesTotalSortedComputedWeight()); - } - - public Float getSpeciesTotalUnsortedWeight() { - return TuttiEntities.getValueOrComputedValue( - null, catchBatch.getSpeciesTotalUnsortedComputedWeight()); - } - - public Boolean getSpeciesTotalUnsortedWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - null, catchBatch.getSpeciesTotalUnsortedComputedWeight()); - } - - public Float getSpeciesTotalSampleSortedWeight() { - return TuttiEntities.getValueOrComputedValue( - catchBatch.getSpeciesTotalSampleSortedComputedWeight(), - catchBatch.getSpeciesTotalSampleSortedComputedWeight()); - } - - public Boolean getSpeciesTotalSampleSortedWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - null, catchBatch.getSpeciesTotalSampleSortedComputedWeight()); - } - - public Float getSpeciesTotalInertWeight() { - return TuttiEntities.getValueOrComputedValue( - catchBatch.getSpeciesTotalInertWeight(), - catchBatch.getSpeciesTotalInertComputedWeight()); - } - - public Boolean getSpeciesTotalInertWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - catchBatch.getSpeciesTotalInertWeight(), - catchBatch.getSpeciesTotalInertComputedWeight()); - } - - public Float getSpeciesTotalLivingNotItemizedWeight() { - return TuttiEntities.getValueOrComputedValue( - catchBatch.getSpeciesTotalLivingNotItemizedWeight(), - catchBatch.getSpeciesTotalLivingNotItemizedComputedWeight()); - } - - public Boolean getSpeciesTotalLivingNotItemizedWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - catchBatch.getSpeciesTotalLivingNotItemizedWeight(), - catchBatch.getSpeciesTotalLivingNotItemizedComputedWeight()); - } - - public Float getBenthosTotalWeight() { - return TuttiEntities.getValueOrComputedValue( - null, catchBatch.getBenthosTotalComputedWeight()); - } - - public Boolean getBenthosTotalWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - null, catchBatch.getBenthosTotalComputedWeight()); - } - - public Float getBenthosTotalSortedWeight() { - return TuttiEntities.getValueOrComputedValue( - catchBatch.getBenthosTotalSortedWeight(), - catchBatch.getBenthosTotalSortedComputedWeight()); - } - - public Boolean getBenthosTotalSortedWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - catchBatch.getBenthosTotalSortedWeight(), - catchBatch.getBenthosTotalSortedComputedWeight()); - } - - public Float getBenthosTotalUnsortedWeight() { - return TuttiEntities.getValueOrComputedValue( - null, catchBatch.getBenthosTotalUnsortedComputedWeight()); - } - - public Boolean getBenthosTotalUnsortedWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - null, catchBatch.getBenthosTotalUnsortedComputedWeight()); - } - - public Float getBenthosTotalSampleSortedWeight() { - return TuttiEntities.getValueOrComputedValue( - null, catchBatch.getBenthosTotalSampleSortedComputedWeight()); - } - - public Boolean getBenthosTotalSampleSortedWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - null, catchBatch.getBenthosTotalSampleSortedComputedWeight()); - } - - public Float getBenthosTotalInertWeight() { - return TuttiEntities.getValueOrComputedValue( - catchBatch.getBenthosTotalInertWeight(), - catchBatch.getBenthosTotalInertComputedWeight()); - } - - public Boolean getBenthosTotalInertWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - catchBatch.getBenthosTotalInertWeight(), - catchBatch.getBenthosTotalInertComputedWeight()); - } - - public Float getBenthosTotalLivingNotItemizedWeight() { - return TuttiEntities.getValueOrComputedValue( - catchBatch.getBenthosTotalLivingNotItemizedWeight(), - catchBatch.getBenthosTotalLivingNotItemizedComputedWeight()); - } - - public Boolean getBenthosTotalLivingNotItemizedWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - catchBatch.getBenthosTotalLivingNotItemizedWeight(), - catchBatch.getBenthosTotalLivingNotItemizedComputedWeight()); - } - - public Float getMarineLitterTotalWeight() { - return TuttiEntities.getValueOrComputedValue( - catchBatch.getMarineLitterTotalWeight(), - catchBatch.getMarineLitterTotalComputedWeight()); - } - - public Boolean getMarineLitterTotalWeightComputed() { - return TuttiEntities.getValueOrComputedValueComputed( - catchBatch.getMarineLitterTotalWeight(), - catchBatch.getMarineLitterTotalComputedWeight()); - } - - protected Serializable getGearUseFeature(Caracteristic caracteristic) { - CaracteristicMap gearUseFeatures = fishingOperation.getGearUseFeatures(); - Serializable serializable = gearUseFeatures == null ? null : gearUseFeatures.get(caracteristic); - return serializable; - } -} \ No newline at end of file Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ParameterExportModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ParameterExportModel.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ParameterExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,94 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.CaracteristicMap; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.service.DecoratorService; -import fr.ifremer.tutti.service.TuttiCsvUtil; - -import java.io.Serializable; -import java.util.List; -import java.util.Map; - -/** - * Model of a parameter export. - * - * @author tchemit <chemit@codelutin.com> - * @since 1.3 - */ -public class ParameterExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<ParameterExportRow> { - - public ParameterExportModel(char separator, DecoratorService decoratorService) { - super(separator); - - newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); - newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); - newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); - newColumnForExport("Code_station", FishingOperation.PROPERTY_STATION_NUMBER); - newColumnForExport("Numero_Trait", FishingOperation.PROPERTY_FISHING_OPERATION_NUMBER, TuttiCsvUtil.INTEGER); - newColumnForExport("Poche", FishingOperation.PROPERTY_MULTIRIG_AGGREGATION); - - newColumnForExport("Code_PMFM", ParameterExportRow.PROPERTY_CARACTERISTIC, Caracteristic.PROPERTY_ID); - newColumnForExportByDecorator("Libelle_PMFm", ParameterExportRow.PROPERTY_CARACTERISTIC, decoratorService.getDecoratorByType(Caracteristic.class)); - newColumnForExport("Valeur", ParameterExportRow.PROPERTY_VALUE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); - } - - public void prepareRows(List<ParameterExportRow> rows, - Cruise cruise, - FishingOperation operation) { - - CaracteristicMap gearUseFeatures = operation.getGearUseFeatures(); - if (gearUseFeatures != null) { - for (Map.Entry<Caracteristic, Serializable> entry : gearUseFeatures.entrySet()) { - Caracteristic caracteristic = entry.getKey(); - - ParameterExportRow row = new ParameterExportRow(); - row.setCruise(cruise); - row.setFishingOperation(operation); - row.setCaracteristic(caracteristic); - row.setValue(entry.getValue()); - rows.add(row); - } - } - CaracteristicMap vesselUseFeatures = operation.getVesselUseFeatures(); - if (vesselUseFeatures != null) { - for (Map.Entry<Caracteristic, Serializable> entry : vesselUseFeatures.entrySet()) { - Caracteristic caracteristic = entry.getKey(); - - ParameterExportRow row = new ParameterExportRow(); - row.setCruise(cruise); - row.setFishingOperation(operation); - row.setCaracteristic(caracteristic); - row.setValue(entry.getValue()); - rows.add(row); - } - } - } - -} \ No newline at end of file Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ParameterExportRow.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ParameterExportRow.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ParameterExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,105 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; - -import java.io.Serializable; -import java.util.Date; - -/** - * A row in a parameter export. - * - * @author tchemit <chemit@codelutin.com> - * @since 1.3 - */ -public class ParameterExportRow implements Serializable { - - private static final long serialVersionUID = 1L; - - public static final String PROPERTY_CARACTERISTIC = "caracteristic"; - - public static final String PROPERTY_VALUE = "value"; - - - protected Cruise cruise; - - protected FishingOperation fishingOperation; - - protected Caracteristic caracteristic; - - private Serializable value; - - public void setCruise(Cruise cruise) { - this.cruise = cruise; - } - - public void setFishingOperation(FishingOperation fishingOperation) { - this.fishingOperation = fishingOperation; - } - - public void setCaracteristic(Caracteristic caracteristic) { - this.caracteristic = caracteristic; - } - - public void setValue(Serializable value) { - this.value = value; - } - - public Date getBeginDate() { - return cruise.getBeginDate(); - } - - public Program getProgram() { - return cruise.getProgram(); - } - - public String getSurveyPart() { - return cruise.getSurveyPart(); - } - - public String getStationNumber() { - return fishingOperation.getStationNumber(); - } - - public Integer getFishingOperationNumber() { - return fishingOperation.getFishingOperationNumber(); - } - - public String getMultirigAggregation() { - return fishingOperation.getMultirigAggregation(); - } - - public Caracteristic getCaracteristic() { - return caracteristic; - } - - public Serializable getValue() { - return value; - } -} \ No newline at end of file Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SpeciesExportModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SpeciesExportModel.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SpeciesExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,77 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.data.BatchContainer; -import fr.ifremer.tutti.persistence.entities.data.BenthosBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.service.TuttiCsvUtil; - -import java.util.List; - -/** - * To export a species used in data to export. - * - * @author tchemit <chemit@codelutin.com> - * @since 2.3 - */ -public class SpeciesExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<SpeciesExportRow> { - - public SpeciesExportModel(char separator) { - super(separator); - newColumnForExport("Id", SpeciesExportRow.SPECIES + "." + Species.PROPERTY_REFERENCE_TAXON_ID, TuttiCsvUtil.PRIMITIVE_INTEGER); - newColumnForExport("Code_Rubin", SpeciesExportRow.SPECIES + "." + Species.PROPERTY_REF_TAX_CODE); - newColumnForExport("Nom Scientifique", SpeciesExportRow.SPECIES + "." + Species.PROPERTY_NAME); - newColumnForExport("Code campagne", SpeciesExportRow.SPECIES + "." + Species.PROPERTY_SURVEY_CODE); - } - - public void prepareBatchRows(TuttiExportService.ExportContext exportContext, - BatchContainer<SpeciesBatch> rootSpeciesBatch, - BatchContainer<BenthosBatch> rootBenthosBatch) { - - for (SpeciesBatch speciesBatch : rootSpeciesBatch.getChildren()) { - - exportContext.addSpecies(speciesBatch.getSpecies()); - } - for (BenthosBatch benthosBatch : rootBenthosBatch.getChildren()) { - exportContext.addSpecies(benthosBatch.getSpecies()); - } - } - - public void prepareIndividualRows(TuttiExportService.ExportContext exportContext, - List<IndividualObservationExportRow> rows) { - for (IndividualObservationExportRow row : rows) { - exportContext.addSpecies(row.getSpecies()); - } - } - - public void prepareAccidentalRows(TuttiExportService.ExportContext exportContext, - List<AccidentalCatchExportRow> rows) { - for (AccidentalCatchExportRow row : rows) { - exportContext.addSpecies(row.getSpecies()); - } - } -} \ No newline at end of file Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SpeciesExportRow.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SpeciesExportRow.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SpeciesExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,52 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.referential.Species; - -import java.io.Serializable; - -/** - * A species in a export. - * - * @author tchemit <chemit@codelutin.com> - * @since 2.3 - */ -public class SpeciesExportRow implements Serializable { - - private static final long serialVersionUID = 1L; - - public static final String SPECIES = "species"; - - protected Species species; - - public Species getSpecies() { - return species; - } - - public void setSpecies(Species species) { - this.species = species; - } -} Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SurveyExportModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SurveyExportModel.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SurveyExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,72 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; -import fr.ifremer.tutti.service.TuttiCsvUtil; - -import java.util.List; - -/** - * Model of a survey export. - * - * @author tchemit <chemit@codelutin.com> - * @since 1.3 - */ -public class SurveyExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<SurveyExportRow> { - - public SurveyExportModel(char separator) { - super(separator); - - newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); - newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); - newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); - newColumnForExport("Navire", Cruise.PROPERTY_VESSEL, TuttiCsvUtil.VESSEL_VALUE_FORMATTER); - newColumnForExport("Pays", SurveyExportRow.PROPERTY_COUNTRY); - newColumnForExport("Zone_Etude", Program.PROPERTY_ZONE, TuttiLocation.PROPERTY_NAME); - newColumnForExport("Campagne", Cruise.PROPERTY_NAME); - newColumnForExport("Id_Sismer", SurveyExportRow.PROPERTY_ID_SISMER); -// newColumnForExport("Nombre_de_poche", Cruise.PROPERTY_MULTIRIG_NUMBER, TuttiCsvUtil.PRIMITIVE_INTEGER); - newColumnForExport("Date_Deb_Campagne", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.DAY_TIME_SECOND); - newColumnForExport("Port_Deb_Campagne", Cruise.PROPERTY_DEPARTURE_LOCATION, TuttiLocation.PROPERTY_NAME); - newColumnForExport("Date_Fin_Campagne", Cruise.PROPERTY_END_DATE, TuttiCsvUtil.DAY_TIME_SECOND); - newColumnForExport("Port_Fin_Campagne", Cruise.PROPERTY_RETURN_LOCATION, TuttiLocation.PROPERTY_NAME); -// newColumnForExport("Engin", Cruise.PROPERTY_GEAR, TuttiCsvUtil.LIST_GEAR_FORMATTER); - newColumnForExport("Chef_Mission", Cruise.PROPERTY_HEAD_OF_MISSION, TuttiCsvUtil.LIST_PERSON_FORMATTER); - newColumnForExport("Resp_Salle_Tri", Cruise.PROPERTY_HEAD_OF_SORT_ROOM, TuttiCsvUtil.LIST_PERSON_FORMATTER); - newColumnForExport("Commentaire", Cruise.PROPERTY_COMMENT); - } - - public void prepareRows(List<SurveyExportRow> rows, - Cruise cruise, - TuttiLocation country) { - SurveyExportRow row = new SurveyExportRow(); - row.setCruise(cruise); - row.setCountry(country); - rows.add(row); - } -} \ No newline at end of file Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SurveyExportRow.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SurveyExportRow.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SurveyExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,128 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.referential.GearWithOriginalRankOrder; -import fr.ifremer.tutti.persistence.entities.referential.Person; -import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; -import fr.ifremer.tutti.persistence.entities.referential.Vessel; - -import java.io.Serializable; -import java.util.Date; -import java.util.List; - -/** - * A row in a survey export. - * - * @author tchemit <chemit@codelutin.com> - * @since 1.3 - */ -public class SurveyExportRow implements Serializable { - - private static final long serialVersionUID = 1L; - - public static final String PROPERTY_COUNTRY = "country"; - - public static final String PROPERTY_ID_SISMER = "idSismer"; - - protected Cruise cruise; - - protected TuttiLocation country; - - public void setCruise(Cruise cruise) { - this.cruise = cruise; - } - - public void setCountry(TuttiLocation country) { - this.country = country; - } - - public Date getBeginDate() { - return cruise.getBeginDate(); - } - - public Program getProgram() { - return cruise.getProgram(); - } - - public String getSurveyPart() { - return cruise.getSurveyPart(); - } - - public TuttiLocation getZone() { - return cruise.getProgram().getZone(); - } - - public Vessel getVessel() { - return cruise.getVessel(); - } - - public String getCountry() { - return country.getLabel(); - } - - public String getName() { - return cruise.getName(); - } - - public List<GearWithOriginalRankOrder> getGear() { - return cruise.getGear(); - } - - public TuttiLocation getDepartureLocation() { - return cruise.getDepartureLocation(); - } - - public Date getEndDate() { - return cruise.getEndDate(); - } - - public TuttiLocation getReturnLocation() { - return cruise.getReturnLocation(); - } - - public String getComment() { - return cruise.getComment(); - } - - public List<Person> getHeadOfMission() { - return cruise.getHeadOfMission(); - } - - public List<Person> getHeadOfSortRoom() { - return cruise.getHeadOfSortRoom(); - } - - public Integer getMultirigNumber() { - return cruise.getMultirigNumber(); - } - - // see http://forge.codelutin.com/issues/2877 - public String getIdSismer() { - return ""; - } -} Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/TuttiExportService.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/TuttiExportService.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/TuttiExportService.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,953 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import com.google.common.base.Charsets; -import com.google.common.base.Preconditions; -import com.google.common.collect.Lists; -import com.google.common.collect.Maps; -import com.google.common.io.Files; -import fr.ifremer.tutti.TuttiBusinessException; -import fr.ifremer.tutti.TuttiIOUtil; -import fr.ifremer.tutti.TuttiTechnicalException; -import fr.ifremer.tutti.persistence.ProgressionModel; -import fr.ifremer.tutti.persistence.entities.CaracteristicMap; -import fr.ifremer.tutti.persistence.entities.TuttiEntities; -import fr.ifremer.tutti.persistence.entities.data.BatchContainer; -import fr.ifremer.tutti.persistence.entities.data.BenthosBatch; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.MarineLitterBatch; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.data.SampleCategoryModel; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.Gear; -import fr.ifremer.tutti.persistence.entities.referential.Gears; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; -import fr.ifremer.tutti.persistence.entities.referential.Vessel; -import fr.ifremer.tutti.service.AbstractTuttiService; -import fr.ifremer.tutti.service.DecoratorService; -import fr.ifremer.tutti.service.PersistenceService; -import fr.ifremer.tutti.service.TuttiCsvUtil; -import fr.ifremer.tutti.service.TuttiServiceContext; -import fr.ifremer.tutti.service.catches.WeightComputingService; -import org.apache.commons.collections.MapUtils; -import org.apache.commons.io.IOUtils; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.nuiton.decorator.Decorator; - -import java.io.BufferedWriter; -import java.io.Closeable; -import java.io.File; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.util.Collections; -import java.util.Comparator; -import java.util.List; -import java.util.Map; - -import static org.nuiton.i18n.I18n._; - -/** - * To export data in the generic format. - * <p/> - * See http://forge.codelutin.com/issues/1875. - * - * @author tchemit <chemit@codelutin.com> - * @since 1.3 - */ -public class TuttiExportService extends AbstractTuttiService { - - private static final Log log = - LogFactory.getLog(TuttiExportService.class); - - protected PersistenceService persistenceService; - - protected DecoratorService decoratorService; - - protected WeightComputingService weightComputingService; - - protected char csvSeparator; - - protected Caracteristic verticalOpeningCaracteristic; - - protected Caracteristic horizontalOpeningWingCaracteristic; - - protected Caracteristic horizontalOpeningDoorCaracteristic; - - protected TuttiLocation country; - - protected SampleCategoryModel sampleCategoryModel; - - protected Caracteristic deadOrAliveCaracteristic; - - protected Caracteristic genderCaracteristic; - - protected Caracteristic weightMeasuredCaracteristic; - - protected Caracteristic pmfmIdCaracteristic; - - @Override - public void setServiceContext(TuttiServiceContext context) { - super.setServiceContext(context); - persistenceService = getService(PersistenceService.class); - decoratorService = getService(DecoratorService.class); - weightComputingService = getService(WeightComputingService.class); - - sampleCategoryModel = context.getSampleCategoryModel(); - - csvSeparator = context.getConfig().getCsvSeparator(); - verticalOpeningCaracteristic = persistenceService.getVerticalOpeningCaracteristic(); - horizontalOpeningWingCaracteristic = persistenceService.getHorizontalOpeningWingCaracteristic(); - horizontalOpeningDoorCaracteristic = persistenceService.getHorizontalOpeningDoorCaracteristic(); - weightMeasuredCaracteristic = persistenceService.getWeightMeasuredCaracteristic(); - pmfmIdCaracteristic = persistenceService.getPmfmIdCaracteristic(); - deadOrAliveCaracteristic = persistenceService.getDeadOrAliveCaracteristic(); - genderCaracteristic = persistenceService.getSexCaracteristic(); - - List<TuttiLocation> allCountry = persistenceService.getAllCountry(); - String countryId = context.getConfig().getExportCountryId(); - country = TuttiEntities.splitById(allCountry).get(countryId); - } - - public void exportProgram(String programId, - File exportFile, - ProgressionModel progressionModel) { - Preconditions.checkNotNull(programId); - Preconditions.checkNotNull(exportFile); - - Program program = persistenceService.getProgram(programId); - Preconditions.checkNotNull(program); - - if (log.isDebugEnabled()) { - log.debug("Will export program: " + programId); - } - List<Cruise> allCruise = persistenceService.getAllCruise(programId); - - File basedir = new File(context.getConfig().newTempFile( - "exportProgram"), "exportProgram-" + programId); - - TuttiIOUtil.forceMkdir(basedir, _("tutti.service.mkDir.error", basedir)); - - ExportContext exportContext = createExportContext(basedir); - - try { - for (Cruise cruise : allCruise) { - // load full cruise - cruise = persistenceService.getCruise(cruise.getId()); - exportCruise(cruise, exportContext, progressionModel); - } - TuttiIOUtil.close(exportContext, _("tutti.service.export.closeContext.error")); - - progressionModel.setMessage( - _("tutti.service.exportCruise.buildZip", exportFile)); - - TuttiIOUtil.zip(basedir, exportFile, _("tutti.service.export.zip.error", exportFile)); - progressionModel.increments(1); - } finally { - IOUtils.closeQuietly(exportContext); - } - } - - public void exportCruise(String cruiseId, - File exportFile, - ProgressionModel progressionModel) { - - Preconditions.checkNotNull(cruiseId); - Preconditions.checkNotNull(exportFile); - - Cruise cruise = persistenceService.getCruise(cruiseId); - Preconditions.checkNotNull(cruise); - - if (log.isDebugEnabled()) { - log.debug("Will export cruise: " + cruiseId); - } - - // check cruise fishing operations - TuttiBusinessException checkError = null; - try { - checkCruise(progressionModel, cruise); - } catch (TuttiBusinessException e) { - // error while checking cruise - if (log.isDebugEnabled()) { - log.debug("Got a check cruise error", e); - } - checkError = e; - } - - File basedir = new File(context.getConfig().newTempFile( - "exportCruise"), "exportCruise-" + cruiseId); - - TuttiIOUtil.forceMkdir(basedir, _("tutti.service.mkDir.error", basedir)); - - ExportContext exportContext = createExportContext(basedir); - - try { - exportCruise(cruise, exportContext, progressionModel); - TuttiIOUtil.close(exportContext, _("tutti.service.export.closeContext.error")); - - progressionModel.setMessage( - _("tutti.service.exportCruise.buildZip", exportFile)); - - TuttiIOUtil.zip(basedir, exportFile, _("tutti.service.export.zip.error", exportFile)); - progressionModel.increments(1); - } finally { - IOUtils.closeQuietly(exportContext); - } - - if (checkError != null) { - // rethrow error - throw checkError; - } - } - - protected ExportContext createExportContext(File basedir) { - - - List<Species> allReferentSpecies = persistenceService.getAllReferentSpecies(); - Map<String, Species> speciesById = TuttiEntities.splitById(allReferentSpecies); - - return new ExportContext( - basedir, - csvSeparator, - decoratorService, - verticalOpeningCaracteristic, - horizontalOpeningWingCaracteristic, - horizontalOpeningDoorCaracteristic, - weightMeasuredCaracteristic, - deadOrAliveCaracteristic, - genderCaracteristic, - pmfmIdCaracteristic, - sampleCategoryModel, - speciesById); - } - - protected void checkCruise(ProgressionModel progressionModel, Cruise cruise) { - Preconditions.checkNotNull(cruise); - - - progressionModel.setMessage( - _("tutti.service.exportCruise.checkCruise", cruise.getName())); - - // check cruise fishing operations - Map<String, String> errors = - weightComputingService.checkCruise(cruise.getId()); - - progressionModel.increments(1); - - if (MapUtils.isNotEmpty(errors)) { - - // there is some fishing operations with some errors - - Decorator<Cruise> cruiseDecorator = - decoratorService.getDecoratorByType(Cruise.class); - - Decorator<FishingOperation> fishingOperationDecorator = - decoratorService.getDecoratorByType(FishingOperation.class); - StringBuilder sb = new StringBuilder(); - for (Map.Entry<String, String> entry : errors.entrySet()) { - String fishingOperationId = entry.getKey(); - FishingOperation fishingOperation = persistenceService.getFishingOperation(fishingOperationId); - String fishingOperationStr = fishingOperationDecorator.toString(fishingOperation); - sb.append(_("tutti.service.export.invalid.fishingOperation", fishingOperationStr, entry.getValue())); - } - String cruiseStr = cruiseDecorator.toString(cruise); - throw new TuttiBusinessException( - _("tutti.service.export.invalid.cruise", cruiseStr, sb.toString())); - } - } - - protected void exportCruise(Cruise cruise, - ExportContext exportContext, - ProgressionModel progressionModel) { - - List<FishingOperation> operations = - persistenceService.getAllFishingOperation(cruise.getId()); - - // load fully operations - List<FishingOperation> loadedOperations = - Lists.newArrayListWithCapacity(operations.size()); - for (FishingOperation operation : operations) { - FishingOperation loadedOeration = - persistenceService.getFishingOperation(operation.getId()); - loadedOperations.add(loadedOeration); - } - - String cruiseName = cruise.getName(); - progressionModel.setMessage( - _("tutti.service.exportCruise.exportSurvey", cruiseName)); - exportSurvey(exportContext, cruise); - progressionModel.increments(1); - - progressionModel.setMessage( - _("tutti.service.exportCruise.exportGearCaracteristics", cruiseName)); - exportGearCaracteristics(exportContext, cruise); - progressionModel.increments(1); - - progressionModel.setMessage( - _("tutti.service.exportCruise.exportOperations", cruiseName)); - exportOperations(exportContext, cruise, loadedOperations); - progressionModel.increments(1); - - progressionModel.setMessage( - _("tutti.service.exportCruise.exportParameters", cruiseName)); - exportParameters(exportContext, cruise, loadedOperations); - progressionModel.increments(1); - - progressionModel.setMessage( - _("tutti.service.exportCruise.exportMarineLitters", cruiseName)); - exportMarineLitters(exportContext, cruise, loadedOperations); - progressionModel.increments(1); - - progressionModel.setMessage( - _("tutti.service.exportCruise.exportIndividualObservations", cruiseName)); - exportIndividualObservations(exportContext, cruise, loadedOperations); - progressionModel.increments(1); - - progressionModel.setMessage( - _("tutti.service.exportCruise.exportAccidentalCatches", cruiseName)); - exportAccidentalCatch(exportContext, cruise, loadedOperations); - progressionModel.increments(1); - - progressionModel.setMessage( - _("tutti.service.exportCruise.exportCatches", cruiseName)); - exportCatches(exportContext, cruise, loadedOperations); - progressionModel.increments(1); - - progressionModel.setMessage( - _("tutti.service.exportCruise.exportSpecies", cruiseName)); - - exportSpecies(exportContext, exportContext.getSpeciesToExport()); - progressionModel.increments(1); - } - - protected void exportSurvey(ExportContext exportContext, - Cruise cruise) { - try { - - List<SurveyExportRow> rows = Lists.newArrayList(); - exportContext.surveyModel.prepareRows(rows, cruise, country); - exportContext.surveyExport.write(rows, exportContext.surveyWriter); - } catch (Exception e) { - throw new TuttiTechnicalException(_("tutti.service.export.survey.error"), e); - } - } - - protected void exportGearCaracteristics(ExportContext exportContext, - Cruise cruise) { - try { - - List<GearCaracteristicExportRow> rows = Lists.newArrayList(); - - for (Gear gear : cruise.getGear()) { - - CaracteristicMap caracteristics = - persistenceService.getGearCaracteristics( - cruise.getId(), - gear.getId(), - gear.getRankOrder()); - - Gear gearWithCaracteristics = Gears.newGear(gear); - gearWithCaracteristics.setCaracteristics(caracteristics); - exportContext.gearCaracteristicsModel.prepareRows(rows, cruise, gearWithCaracteristics); - } - - exportContext.gearCaracteristicsExport.write(rows, exportContext.gearCaracteristicsWriter); - } catch (Exception e) { - throw new TuttiTechnicalException(_("tutti.service.export.survey.error"), e); - } - } - - protected void exportOperations(ExportContext exportContext, - Cruise cruise, - List<FishingOperation> operations) { - - try { - - List<OperationExportRow> rows = Lists.newArrayList(); - - for (FishingOperation operation : operations) { - - OperationContext operationContext = getOperationContext(operation); - CatchBatch catchBatch = operationContext.getCatchBatch(); - exportContext.operationModel.prepareRows(rows, - cruise, - operation, - catchBatch); - } - - exportContext.operationExport.write(rows, exportContext.operationWriter); - } catch (Exception e) { - throw new TuttiTechnicalException(_("tutti.service.export.operations.error"), e); - } - } - - protected void exportParameters(ExportContext exportContext, - Cruise cruise, - List<FishingOperation> operations) { - - try { - - for (FishingOperation operation : operations) { - List<ParameterExportRow> rows = Lists.newArrayList(); - exportContext.parameterModel.prepareRows(rows, cruise, operation); - exportContext.parameterExport.write(rows, exportContext.parameterWriter); - } - - } catch (Exception e) { - throw new TuttiTechnicalException(_("tutti.service.export.parameters.error"), e); - } - } - - protected void exportMarineLitters(ExportContext exportContext, - Cruise cruise, - List<FishingOperation> operations) { - - try { - - for (FishingOperation operation : operations) { - OperationContext operationContext = getOperationContext(operation); - - boolean withCatchBatch = operationContext.isWithCatchBatch(); - if (!withCatchBatch) { - continue; - } - List<MarineLitterExportRow> rows = Lists.newArrayList(); - exportContext.marineLitterModel.prepareRows(persistenceService, rows, cruise, operation); - exportContext.marineLitterExport.write(rows, exportContext.marineLitterWriter); - } - - } catch (Exception e) { - throw new TuttiTechnicalException(_("tutti.service.export.parameters.error"), e); - } - } - - protected void exportIndividualObservations(ExportContext exportContext, - Cruise cruise, - List<FishingOperation> operations) { - - try { - - for (FishingOperation operation : operations) { - OperationContext operationContext = getOperationContext(operation); - - boolean withCatchBatch = operationContext.isWithCatchBatch(); - if (!withCatchBatch) { - continue; - } - List<IndividualObservationExportRow> rows = Lists.newArrayList(); - exportContext.individualObservationModel.prepareRows(persistenceService, rows, cruise, operation); - exportContext.speciesModel.prepareIndividualRows( - exportContext, - rows); - exportContext.individualObservationExport.write(rows, exportContext.individualObservationWriter); - } - - } catch (Exception e) { - throw new TuttiTechnicalException(_("tutti.service.export.parameters.error"), e); - } - } - - protected void exportAccidentalCatch(ExportContext exportContext, - Cruise cruise, - List<FishingOperation> operations) { - try { - - for (FishingOperation operation : operations) { - List<AccidentalCatchExportRow> rows = Lists.newArrayList(); - exportContext.accidentalCatchModel.prepareRows(persistenceService, rows, cruise, operation); - exportContext.speciesModel.prepareAccidentalRows( - exportContext, - rows); - exportContext.accidentalCatchExport.write(rows, exportContext.accidentalCatchWriter); - } - - } catch (Exception e) { - throw new TuttiTechnicalException(_("tutti.service.export.parameters.error"), e); - } - } - - protected void exportCatches(ExportContext exportContext, - Cruise cruise, - List<FishingOperation> operations) { - try { - - for (FishingOperation operation : operations) { - - OperationContext operationContext = getOperationContext(operation); - - boolean withCatchBatch = operationContext.isWithCatchBatch(); - if (!withCatchBatch) { - continue; - } - - CatchBatch catchBatch = operationContext.getCatchBatch(); - - BatchContainer<SpeciesBatch> rootSpeciesBatch = - operationContext.getRootSpeciesBatch(); - - BatchContainer<BenthosBatch> rootBenthosBatch = - operationContext.getRootBenthosBatch(); - - exportContext.speciesModel.prepareBatchRows( - exportContext, - rootSpeciesBatch, - rootBenthosBatch); - - Float totalWeight = TuttiEntities.getValueOrComputedValue( - catchBatch.getCatchTotalWeight(), - catchBatch.getCatchTotalComputedWeight()); - - Float totalUnsortedWeight = - catchBatch.getCatchTotalUnsortedComputedWeight(); - - - Float totalSortedSpeciesWeight = TuttiEntities.getValueOrComputedValue( - catchBatch.getSpeciesTotalSortedWeight(), - catchBatch.getSpeciesTotalSortedComputedWeight()); - - Float totalSampleSortedSpeciesWeight = - catchBatch.getSpeciesTotalSampleSortedComputedWeight(); - - Float totalSortedBenthosWeight = TuttiEntities.getValueOrComputedValue( - catchBatch.getBenthosTotalSortedWeight(), - catchBatch.getBenthosTotalSortedComputedWeight()); - - Float totalSampleSortedBenthosWeight = - catchBatch.getBenthosTotalSampleSortedComputedWeight(); - - Float totalSortedWeight = catchBatch.getCatchTotalSortedComputedWeight(); - - //FIXME tchemit 2013-07-12 J'utilise en fait la formule (Poids de la capture totale - poids du HV dans la capture totale) / (poids total capture triée) - // (Poids de la capture totale - poids du HV dans la capture totale) / (poids total capture triée - poids du HV dans la capture totale) - - Float catchRaisingFactor = totalWeight == null || totalUnsortedWeight == null || totalSortedWeight == null ? 1 : (totalWeight - totalUnsortedWeight) / totalSortedWeight; - - Float speciesCatchRaisingFactor = totalSampleSortedSpeciesWeight == null || totalSortedSpeciesWeight == null || totalSampleSortedSpeciesWeight == null ? 1 : (totalSampleSortedSpeciesWeight == 0 ? 0 : (totalSortedSpeciesWeight / totalSampleSortedSpeciesWeight) * catchRaisingFactor); - Float benthosCatchRaisingFactor = totalSampleSortedBenthosWeight == null || totalSortedBenthosWeight == null || totalSampleSortedBenthosWeight == null ? 1 : (totalSampleSortedBenthosWeight == 0 ? 0 : (totalSortedBenthosWeight / totalSampleSortedBenthosWeight) * catchRaisingFactor); - - if (log.isDebugEnabled()) { - String message = "\ncatchTotalWeight : " + totalWeight + - "\ncatchTotalUnsortedWeight : " + totalUnsortedWeight + - "\ntotalSampleSortedSpeciesWeight : " + totalSampleSortedSpeciesWeight + - "\ntotalSampleSortedBenthosWeight : " + totalSampleSortedBenthosWeight + - "\ntotalSortedWeight : " + totalSortedWeight + - "\ncatchRaisingFactor : " + catchRaisingFactor + - "\nspeciesCatchRaisingFactor : " + speciesCatchRaisingFactor + - "\nbenthosCatchRaisingFactor : " + benthosCatchRaisingFactor; - - log.debug(message); - } - - List<CatchExportRow> rows = Lists.newArrayList(); - exportContext.catchModel.prepareRows(persistenceService, - rows, - cruise, - operation, - rootSpeciesBatch, - rootBenthosBatch, - speciesCatchRaisingFactor, - benthosCatchRaisingFactor); - - exportContext.catchExport.write(rows, exportContext.catchWriter); - } - - } catch (Exception e) { - throw new TuttiTechnicalException( - _("tutti.service.export.catches.error"), e); - } - } - - protected void exportSpecies(ExportContext exportContext, - List<SpeciesExportRow> rows) { - - try { - - exportContext.speciesExport.write(rows, exportContext.speciesWriter); - - } catch (Exception e) { - throw new TuttiTechnicalException( - _("tutti.service.export.catches.error"), e); - } - } - - protected static class ExportContext implements Closeable { - - File surveyFile; - - File gearCaracteristicsFile; - - File operationFile; - - File parameterFile; - - File marineLitterFile; - - File individualObservationFile; - - File catchFile; - - File accidentalCatchFile; - - File speciesFile; - - BufferedWriter surveyWriter; - - BufferedWriter gearCaracteristicsWriter; - - BufferedWriter operationWriter; - - BufferedWriter parameterWriter; - - BufferedWriter marineLitterWriter; - - BufferedWriter catchWriter; - - BufferedWriter accidentalCatchWriter; - - BufferedWriter individualObservationWriter; - - BufferedWriter speciesWriter; - - SurveyExportModel surveyModel; - - GearCaracteristicExportModel gearCaracteristicsModel; - - OperationExportModel operationModel; - - MarineLitterExportModel marineLitterModel; - - ParameterExportModel parameterModel; - - CatchExportModel catchModel; - - AccidentalCatchExportModel accidentalCatchModel; - - IndividualObservationExportModel individualObservationModel; - - SpeciesExportModel speciesModel; - - final Map<String, SpeciesExportRow> speciesToExport = Maps.newTreeMap(); - - TuttiCsvUtil.TuttiRepeatableExport<SurveyExportRow> surveyExport; - - TuttiCsvUtil.TuttiRepeatableExport<GearCaracteristicExportRow> gearCaracteristicsExport; - - TuttiCsvUtil.TuttiRepeatableExport<OperationExportRow> operationExport; - - TuttiCsvUtil.TuttiRepeatableExport<MarineLitterExportRow> marineLitterExport; - - TuttiCsvUtil.TuttiRepeatableExport<ParameterExportRow> parameterExport; - - TuttiCsvUtil.TuttiRepeatableExport<CatchExportRow> catchExport; - - TuttiCsvUtil.TuttiRepeatableExport<AccidentalCatchExportRow> accidentalCatchExport; - - TuttiCsvUtil.TuttiRepeatableExport<IndividualObservationExportRow> individualObservationExport; - - TuttiCsvUtil.TuttiRepeatableExport<SpeciesExportRow> speciesExport; - - Map<String, Species> speciesById; - - String checkError; - - ExportContext(File basedir, - char csvSeparator, - DecoratorService decoratorService, - Caracteristic verticalOpeningCaracteristic, - Caracteristic horizontalOpeningWingCaracteristic, - Caracteristic horizontalOpeningDoorCaracteristic, - Caracteristic weightMeasuredCaracteristic, - Caracteristic deadOrAliveCaracteristic, - Caracteristic genderCaracteristic, - Caracteristic pmfmIdCaracteristic, - SampleCategoryModel sampleCategoryModel, - Map<String, Species> speciesById) { - - this.speciesById = speciesById; - try { - - surveyFile = new File(basedir, "survey.csv"); - surveyWriter = Files.newWriter(surveyFile, Charsets.UTF_8); - - gearCaracteristicsFile = new File(basedir, "gearCaracteristics.csv"); - gearCaracteristicsWriter = Files.newWriter(gearCaracteristicsFile, Charsets.UTF_8); - - operationFile = new File(basedir, "operation.csv"); - operationWriter = Files.newWriter(operationFile, Charsets.UTF_8); - - marineLitterFile = new File(basedir, "marineLitter.csv"); - marineLitterWriter = Files.newWriter(marineLitterFile, Charsets.UTF_8); - - parameterFile = new File(basedir, "parameter.csv"); - parameterWriter = Files.newWriter(parameterFile, Charsets.UTF_8); - - catchFile = new File(basedir, "catch.csv"); - catchWriter = Files.newWriter(catchFile, Charsets.UTF_8); - - accidentalCatchFile = new File(basedir, "accidentalCatch.csv"); - accidentalCatchWriter = Files.newWriter(accidentalCatchFile, Charsets.UTF_8); - - individualObservationFile = new File(basedir, "individualObservation.csv"); - individualObservationWriter = Files.newWriter(individualObservationFile, Charsets.UTF_8); - - speciesFile = new File(basedir, "species.csv"); - speciesWriter = Files.newWriter(speciesFile, Charsets.UTF_8); - - } catch (FileNotFoundException e) { - - // should never happen - throw new TuttiTechnicalException(_("tutti.service.export.context.error"), e); - } - - surveyModel = new SurveyExportModel(csvSeparator); - - gearCaracteristicsModel = new GearCaracteristicExportModel( - csvSeparator, decoratorService); - - operationModel = - new OperationExportModel( - csvSeparator, - verticalOpeningCaracteristic, - horizontalOpeningWingCaracteristic, - horizontalOpeningDoorCaracteristic, - decoratorService.getDecoratorByType(Vessel.class)); - - parameterModel = new ParameterExportModel( - csvSeparator, decoratorService); - - marineLitterModel = new MarineLitterExportModel(csvSeparator); - catchModel = new CatchExportModel(csvSeparator, - sampleCategoryModel, - decoratorService); - accidentalCatchModel = new AccidentalCatchExportModel( - csvSeparator, - deadOrAliveCaracteristic, - genderCaracteristic, - weightMeasuredCaracteristic, - pmfmIdCaracteristic); - individualObservationModel = new IndividualObservationExportModel( - csvSeparator, - weightMeasuredCaracteristic, - pmfmIdCaracteristic); - - speciesModel = new SpeciesExportModel( - csvSeparator); - - surveyExport = TuttiCsvUtil.newRepeatableExport(surveyModel); - - gearCaracteristicsExport = TuttiCsvUtil.newRepeatableExport( - gearCaracteristicsModel); - - operationExport = TuttiCsvUtil.newRepeatableExport( - operationModel); - - parameterExport = TuttiCsvUtil.newRepeatableExport( - parameterModel); - - marineLitterExport = TuttiCsvUtil.newRepeatableExport( - marineLitterModel); - - catchExport = TuttiCsvUtil.newRepeatableExport(catchModel); - accidentalCatchExport = TuttiCsvUtil.newRepeatableExport(accidentalCatchModel); - individualObservationExport = TuttiCsvUtil.newRepeatableExport(individualObservationModel); - speciesExport = TuttiCsvUtil.newRepeatableExport(speciesModel); - } - - @Override - public void close() throws IOException { - IOUtils.closeQuietly(surveyWriter); - IOUtils.closeQuietly(gearCaracteristicsWriter); - IOUtils.closeQuietly(operationWriter); - IOUtils.closeQuietly(parameterWriter); - IOUtils.closeQuietly(catchWriter); - IOUtils.closeQuietly(accidentalCatchWriter); - IOUtils.closeQuietly(marineLitterWriter); - IOUtils.closeQuietly(individualObservationWriter); - IOUtils.closeQuietly(speciesWriter); - } - - public String getCheckError() { - return checkError; - } - - public void setCheckError(String checkError) { - this.checkError = checkError; - } - - public void addSpecies(Species species) { - String speciesId = species.getId(); - if (!speciesToExport.containsKey(speciesId)) { - - // not treated species, add a new row - Species fullSpecies = speciesById.get(speciesId); - SpeciesExportRow row = new SpeciesExportRow(); - row.setSpecies(fullSpecies); - speciesToExport.put(speciesId, row); - } - } - - public List<SpeciesExportRow> getSpeciesToExport() { - List<SpeciesExportRow> result = - Lists.newArrayList(speciesToExport.values()); - - Collections.sort(result, new Comparator<SpeciesExportRow>() { - @Override - public int compare(SpeciesExportRow o1, SpeciesExportRow o2) { - return o1.getSpecies().getReferenceTaxonId().compareTo(o2.getSpecies().getReferenceTaxonId()); - } - }); - return result; - } - } - - protected static class OperationContext { - - protected final FishingOperation operation; - - private final CatchBatch catchBatch; - - private BatchContainer<MarineLitterBatch> rootMarineLitterBatch; - - private BatchContainer<SpeciesBatch> rootSpeciesBatch; - - private BatchContainer<BenthosBatch> rootBenthosBatch; - - - protected boolean withCatchBatch; - - public OperationContext(FishingOperation operation, - PersistenceService persistenceService, - WeightComputingService weightComputingService) { - this.operation = operation; - - String operationId = operation.getId(); - - withCatchBatch = - persistenceService.isFishingOperationWithCatchBatch( - operationId); - - if (withCatchBatch) { - - - // load batches - - catchBatch = - persistenceService.getCatchBatchFromFishingOperation( - operationId); - - boolean withError = false; - - try { - rootSpeciesBatch = weightComputingService.getComputedSpeciesBatches(operationId); - } catch (Exception e) { - withError = true; - rootSpeciesBatch = - persistenceService.getRootSpeciesBatch(operationId, null); - } - - try { - rootBenthosBatch = - weightComputingService.getComputedBenthosBatches(operationId); - } catch (Exception e) { - withError = true; - rootBenthosBatch = - persistenceService.getRootBenthosBatch(operationId, null); - } - - try { - rootMarineLitterBatch = - weightComputingService.getComputedMarineLitterBatches(operationId, catchBatch.getMarineLitterTotalWeight()); - } catch (Exception e) { - withError = true; - rootMarineLitterBatch = - persistenceService.getRootMarineLitterBatch(operationId); - } - - // apply compute weights - - if (!withError) { - weightComputingService.computeCatchBatchWeights( - catchBatch, - rootSpeciesBatch, - rootBenthosBatch, - rootMarineLitterBatch); - } - } else { - if (log.isWarnEnabled()) { - log.warn("Skip fishing operation " + operationId + - " since no catchBatch associated."); - } - catchBatch = null; - rootSpeciesBatch = null; - rootBenthosBatch = null; - rootMarineLitterBatch = null; - } - - } - - public CatchBatch getCatchBatch() { - return catchBatch; - } - - public BatchContainer<MarineLitterBatch> getRootMarineLitterBatch() { - return rootMarineLitterBatch; - } - - public BatchContainer<SpeciesBatch> getRootSpeciesBatch() { - return rootSpeciesBatch; - } - - public BatchContainer<BenthosBatch> getRootBenthosBatch() { - return rootBenthosBatch; - } - - public boolean isWithCatchBatch() { - return withCatchBatch; - } - } - - protected Map<String, OperationContext> operationContexts = Maps.newTreeMap(); - - protected OperationContext getOperationContext(FishingOperation operation) { - String operationId = operation.getId(); - - OperationContext result = operationContexts.get(operationId); - if (result == null) { - - // create it - result = new OperationContext(operation, - persistenceService, - weightComputingService); - operationContexts.put(operationId, result); - } - return result; - - } -} Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/AccidentalCatchExportModel.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/AccidentalCatchExportModel.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/AccidentalCatchExportModel.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/AccidentalCatchExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,170 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.CaracteristicMap; +import fr.ifremer.tutti.persistence.entities.data.AccidentalBatch; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.Gear; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.TuttiCsvUtil; +import org.apache.commons.collections.CollectionUtils; +import org.apache.commons.collections.MapUtils; + +import java.io.Serializable; +import java.util.List; +import java.util.Map; + +/** + * TODO + * + * @author tchemit <chemit@codelutin.com> + * @since 2.2 + */ +public class AccidentalCatchExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<AccidentalCatchExportRow> { + + protected final Caracteristic caracteristicDeadOrAliveSize; + + protected final Caracteristic caracteristicGender; + + protected final Caracteristic caracteristicWeight; + + protected final Caracteristic caracteristicPmfmId; + + public AccidentalCatchExportModel( + char separator, + Caracteristic caracteristicDeadOrAliveSize, + Caracteristic caracteristicGender, + Caracteristic caracteristicWeight, + Caracteristic caracteristicPmfmId) { + super(separator); + + this.caracteristicDeadOrAliveSize = caracteristicDeadOrAliveSize; + this.caracteristicGender = caracteristicGender; + this.caracteristicWeight = caracteristicWeight; + this.caracteristicPmfmId = caracteristicPmfmId; + + newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); + newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); + newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); + newNullableColumnForExport("Engin", FishingOperation.PROPERTY_GEAR + "." + Gear.PROPERTY_NAME); + newColumnForExport("Code_station", FishingOperation.PROPERTY_STATION_NUMBER); + newColumnForExport("Numero_Trait", FishingOperation.PROPERTY_FISHING_OPERATION_NUMBER, TuttiCsvUtil.INTEGER); + newColumnForExport("Poche", FishingOperation.PROPERTY_MULTIRIG_AGGREGATION); + newColumnForExport("Navire", Cruise.PROPERTY_VESSEL, TuttiCsvUtil.VESSEL_VALUE_FORMATTER); + + newColumnForExport("BatchId", AccidentalCatchExportRow.PROPERTY_BATCH_ID, TuttiCsvUtil.PRIMITIVE_INTEGER); + newColumnForExport("ReferenceTaxonId", AccidentalBatch.PROPERTY_SPECIES + "." + Species.PROPERTY_REFERENCE_TAXON_ID, TuttiCsvUtil.PRIMITIVE_INTEGER); + newColumnForExport("ReferenceTaxonName", AccidentalBatch.PROPERTY_SPECIES + "." + Species.PROPERTY_NAME); + newColumnForExport("Commentaire", AccidentalBatch.PROPERTY_COMMENT); + newColumnForExport("CaracteristicId", AccidentalCatchExportRow.PROPERTY_CARACTERISTIC, Caracteristic.PROPERTY_ID); + newColumnForExport("CaracteristicValue", AccidentalCatchExportRow.PROPERTY_CARACTERISTIC_VALUE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); + } + + public void prepareRows(PersistenceService persistenceService, + List<AccidentalCatchExportRow> rows, + Cruise cruise, + FishingOperation operation) { + + List<AccidentalBatch> observations = + persistenceService.getAllAccidentalBatch(operation.getId()); + + if (CollectionUtils.isNotEmpty(observations)) { + for (AccidentalBatch child : observations) { + + addCaracteristicRow(rows, + cruise, + operation, + child, + caracteristicDeadOrAliveSize, + child.getDeadOrAlive()); + + addCaracteristicRow(rows, + cruise, + operation, + child, + caracteristicGender, + child.getGender()); + + addCaracteristicRow(rows, + cruise, + operation, + child, + caracteristicWeight, + child.getWeight()); + + if (child.getLengthStepCaracteristic() != null) { + addCaracteristicRow(rows, + cruise, + operation, + child, + caracteristicPmfmId, + child.getLengthStepCaracteristic().getIdAsInt()); + + addCaracteristicRow(rows, + cruise, + operation, + child, + child.getLengthStepCaracteristic(), + child.getSize()); + } + + CaracteristicMap caracteristics = child.getCaracteristics(); + if (MapUtils.isNotEmpty(caracteristics)) { + for (Map.Entry<Caracteristic, Serializable> entry : caracteristics.entrySet()) { + addCaracteristicRow(rows, + cruise, + operation, + child, + entry.getKey(), + entry.getValue()); + } + } + } + } + } + + private void addCaracteristicRow(List<AccidentalCatchExportRow> rows, + Cruise cruise, + FishingOperation operation, + AccidentalBatch child, + Caracteristic caracteristic, + Serializable caracteristicValue) { + if (caracteristicValue != null) { + + AccidentalCatchExportRow row = new AccidentalCatchExportRow(); + row.setCruise(cruise); + row.setFishingOperation(operation); + row.setBatch(child); + row.setCaracteristic(caracteristic); + row.setCaracteristicValue(caracteristicValue); + rows.add(row); + } + } +} \ No newline at end of file Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/AccidentalCatchExportRow.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/AccidentalCatchExportRow.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/AccidentalCatchExportRow.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/AccidentalCatchExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,139 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.data.AccidentalBatch; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.Gear; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.persistence.entities.referential.Vessel; + +import java.io.Serializable; +import java.util.Date; + +/** + * A row in a accidental catch export. + * + * @author tchemit <chemit@codelutin.com> + * @since 2.2 + */ +public class AccidentalCatchExportRow implements Serializable { + + public static final String PROPERTY_BATCH = "batch"; + + private static final long serialVersionUID = 1L; + + public static final String PROPERTY_BATCH_ID = "batchId"; + + public static final String PROPERTY_CARACTERISTIC = "caracteristic"; + + public static final String PROPERTY_CARACTERISTIC_VALUE = "caracteristicValue"; + + protected Cruise cruise; + + protected FishingOperation fishingOperation; + + protected AccidentalBatch batch; + + protected Caracteristic caracteristic; + + protected Serializable caracteristicValue; + + public void setCruise(Cruise cruise) { + this.cruise = cruise; + } + + public void setFishingOperation(FishingOperation fishingOperation) { + this.fishingOperation = fishingOperation; + } + + public void setBatch(AccidentalBatch batch) { + this.batch = batch; + } + + public void setCaracteristic(Caracteristic caracteristic) { + this.caracteristic = caracteristic; + } + + public void setCaracteristicValue(Serializable caracteristicValue) { + this.caracteristicValue = caracteristicValue; + } + + public Integer getBatchId() { + return batch.getIdAsInt(); + } + + public Caracteristic getCaracteristic() { + return caracteristic; + } + + public Serializable getCaracteristicValue() { + return caracteristicValue; + } + + public String getComment() { + return batch.getComment(); + } + + public Species getSpecies() { + return batch.getSpecies(); + } + + public Date getBeginDate() { + return cruise.getBeginDate(); + } + + public Program getProgram() { + return cruise.getProgram(); + } + + public String getSurveyPart() { + return cruise.getSurveyPart(); + } + + public String getStationNumber() { + return fishingOperation.getStationNumber(); + } + + public Integer getFishingOperationNumber() { + return fishingOperation.getFishingOperationNumber(); + } + + public Gear getGear() { + return fishingOperation.getGear(); + } + + public Vessel getVessel() { + return fishingOperation.getVessel(); + } + + public String getMultirigAggregation() { + return fishingOperation.getMultirigAggregation(); + } + +} Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/CatchExportModel.java (from rev 1366, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/CatchExportModel.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/CatchExportModel.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/CatchExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,457 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.TuttiEntities; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.BenthosBatch; +import fr.ifremer.tutti.persistence.entities.data.BenthosBatchFrequency; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.data.SampleCategoryModel; +import fr.ifremer.tutti.persistence.entities.data.SampleCategoryModelEntry; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.Gear; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.service.DecoratorService; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.TuttiCsvUtil; +import org.apache.commons.collections.CollectionUtils; + +import java.io.Serializable; +import java.util.List; + +/** + * Model of a catch export. + * + * @author tchemit <chemit@codelutin.com> + * @since 1.3 + */ +public class CatchExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<CatchExportRow> { + + public static final String WEIGHT_OR_VOL_TYPE = "Poids"; + + protected SampleCategoryModel sampleCategoryModel; + + public CatchExportModel(char separator, + SampleCategoryModel sampleCategoryModel, + DecoratorService decoratorService) { + super(separator); + this.sampleCategoryModel = sampleCategoryModel; + + newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); + newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); + newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); + newNullableColumnForExport("Engin", FishingOperation.PROPERTY_GEAR + "." + Gear.PROPERTY_NAME); + newColumnForExport("Code_station", FishingOperation.PROPERTY_STATION_NUMBER); + newColumnForExport("Numero_Trait", FishingOperation.PROPERTY_FISHING_OPERATION_NUMBER, TuttiCsvUtil.INTEGER); + newColumnForExport("Poche", FishingOperation.PROPERTY_MULTIRIG_AGGREGATION); + newColumnForExport("Navire", Cruise.PROPERTY_VESSEL, TuttiCsvUtil.VESSEL_VALUE_FORMATTER); + newColumnForExport("Taxon", SpeciesBatch.PROPERTY_SPECIES + "." + Species.PROPERTY_REFERENCE_TAXON_ID, TuttiCsvUtil.INTEGER); + newColumnForExport("Nom_scientifique", SpeciesBatch.PROPERTY_SPECIES + "." + Species.PROPERTY_NAME); + newColumnForExport("Commentaire", SpeciesBatch.PROPERTY_COMMENT); + + for (SampleCategoryModelEntry entry : sampleCategoryModel.getCategory()) { + addSampleCategory(entry.getCanonicalLabel(), entry.getOrder()); + } + + // mensuration + + newNullableColumnForExport("Code_Longueur", CatchExportRow.FREQUENCY_LENGTH_STEP_CARACTERISTIC + "." + Caracteristic.PROPERTY_ID); + newNullableColumnForExportByDecorator("Libelle_Longueur", CatchExportRow.FREQUENCY_LENGTH_STEP_CARACTERISTIC, decoratorService.getDecoratorByType(Caracteristic.class)); + newNullableColumnForExport("Taille", CatchExportRow.FREQUENCY_LENGTH_STEP, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("NumOrdre_Taille_H2", CatchExportRow.FREQUENCY_RANK_ORDER, TuttiCsvUtil.INTEGER); + newNullableColumnForExport("Poids_Classe_Taille", CatchExportRow.FREQUENCY_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Unite_Taille", CatchExportRow.FREQUENCY_LENGTH_STEP_CARACTERISTIC + "." + Caracteristic.PROPERTY_UNIT); + newNullableColumnForExport("Precision_Mesure", CatchExportRow.FREQUENCY_LENGTH_STEP_CARACTERISTIC + "." + Caracteristic.PROPERTY_PRECISION, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Nbr", CatchExportRow.BATCH_NUMBER, TuttiCsvUtil.INTEGER); + + newColumnForExport("Poids_Reference", CatchExportRow.REFERENCE_WEIGHT, TuttiCsvUtil.PRIMITIVE_FLOAT); + newColumnForExport("Coef_Elev_Espece_Capture", CatchExportRow.RAISING_FACTOR, TuttiCsvUtil.PRIMITIVE_FLOAT); + } + + public void prepareRows(PersistenceService persistenceService, + List<CatchExportRow> rows, + Cruise cruise, + FishingOperation operation, + BatchContainer<SpeciesBatch> rootSpeciesBatch, + BatchContainer<BenthosBatch> rootBenthosBatch, + Float speciesCatchRaisingFactor, + Float benthosCatchRaisingFactor) { + + Caracteristic weightMeasuredCaracteristic = persistenceService.getWeightMeasuredCaracteristic(); + String batchWeightUnit = weightMeasuredCaracteristic.getUnit(); + + for (SpeciesBatch speciesBatch : rootSpeciesBatch.getChildren()) { + CatchExportRow row = new CatchExportRow(); + row.setCruise(cruise); + row.setFishingOperation(operation); + row.setSpecies(speciesBatch.getSpecies()); + row.setBatchWeightUnit(batchWeightUnit); + + if (persistenceService.isVracBatch(speciesBatch)) { + + // compute species total weight in catch + + Float sortedBatchWeight = TuttiEntities.getValueOrComputedValue( + speciesBatch.getSampleCategoryWeight(), + speciesBatch.getSampleCategoryComputedWeight()); + + float totalBatchWeight = sortedBatchWeight == null ? 0 : speciesCatchRaisingFactor * + sortedBatchWeight; + + prepareSortedRows(persistenceService, + row, + rows, + speciesBatch, + totalBatchWeight); + } else { + prepareUnsortedRows(row, rows, speciesBatch); + } + + } + for (BenthosBatch benthosBatch : rootBenthosBatch.getChildren()) { + CatchExportRow row = new CatchExportRow(); + row.setCruise(cruise); + row.setFishingOperation(operation); + row.setSpecies(benthosBatch.getSpecies()); + row.setBatchWeightUnit(batchWeightUnit); + + if (persistenceService.isVracBatch(benthosBatch)) { + + // compute species total weight in catch + + Float sortedBatchWeight = TuttiEntities.getValueOrComputedValue( + benthosBatch.getSampleCategoryWeight(), + benthosBatch.getSampleCategoryComputedWeight()); + + float totalBatchWeight = sortedBatchWeight == null ? 0 : benthosCatchRaisingFactor * + sortedBatchWeight; + + prepareSortedRows(persistenceService, + row, + rows, + benthosBatch, + totalBatchWeight); + } else { + prepareUnsortedRows(row, rows, benthosBatch); + } + } + } + + protected void prepareSortedRows(PersistenceService persistenceService, + CatchExportRow currentRow, + List<CatchExportRow> rows, + SpeciesBatch speciesBatch, + final float totalBatchWeight) { + + currentRow.addComment(speciesBatch.getComment()); + + prepareBatch(currentRow, + speciesBatch.getSampleCategoryId(), + speciesBatch.getSampleCategoryValue(), + speciesBatch.getSampleCategoryWeight(), + speciesBatch.getSampleCategoryComputedWeight(), + speciesBatch.getWeight(), + speciesBatch.getNumber(), + speciesBatch.getRankOrder()); + + if (speciesBatch.isChildBatchsEmpty()) { + + // on a leaf, get frequencies + + List<SpeciesBatchFrequency> speciesBatchFrequency = + persistenceService.getAllSpeciesBatchFrequency(speciesBatch.getId()); + + if (CollectionUtils.isEmpty(speciesBatchFrequency)) { + + // no frequency + + CatchExportRow row = currentRow.copy(); + + // Get reference weight + + Float referenceWeight = TuttiEntities.getValueOrComputedValue( + speciesBatch.getWeight(), + speciesBatch.getComputedWeight()); + + if (referenceWeight == null) { + + referenceWeight = TuttiEntities.getValueOrComputedValue( + speciesBatch.getSampleCategoryWeight(), + speciesBatch.getSampleCategoryComputedWeight()); + } + setRaisingFactor(row, totalBatchWeight, referenceWeight); + rows.add(row); + } else { + + // there is some frequencies + + boolean withNoWeightOnFrequencies = + speciesBatchFrequency.get(0).getWeight() == null; + + Float referenceWeight = null; + + if (withNoWeightOnFrequencies) { + + // no weight on frequencies use upper reference weight + + referenceWeight = TuttiEntities.getValueOrComputedValue( + speciesBatch.getWeight(), + speciesBatch.getComputedWeight()); + + if (referenceWeight == null) { + referenceWeight = TuttiEntities.getValueOrComputedValue( + speciesBatch.getSampleCategoryWeight(), + speciesBatch.getSampleCategoryComputedWeight()); + } + } + + for (SpeciesBatchFrequency batchFrequency : speciesBatchFrequency) { + CatchExportRow row = currentRow.copy(); + row.setSpeciesFrequency(batchFrequency); + rows.add(row); + + if (!withNoWeightOnFrequencies) { + + // use concrete frequency weight + referenceWeight = batchFrequency.getWeight(); + } + + setRaisingFactor(row, totalBatchWeight, referenceWeight); + } + } + + } else { + + for (SpeciesBatch childBatch : speciesBatch.getChildBatchs()) { + prepareSortedRows(persistenceService, + currentRow, + rows, + childBatch, + totalBatchWeight + ); + } + } + + // remove last comment (otherwise next brother will have this one too...) + currentRow.popLastComment(); + } + + protected void prepareUnsortedRows(CatchExportRow currentRow, + List<CatchExportRow> rows, + SpeciesBatch speciesBatch) { + + + prepareBatch(currentRow, + speciesBatch.getSampleCategoryId(), + speciesBatch.getSampleCategoryValue(), + speciesBatch.getSampleCategoryWeight(), + speciesBatch.getSampleCategoryComputedWeight(), + speciesBatch.getWeight(), + speciesBatch.getNumber(), + speciesBatch.getRankOrder()); + + CatchExportRow row = currentRow.copy(); + row.addComment(speciesBatch.getComment()); + float referenceWeight = TuttiEntities.getValueOrComputedValue( + speciesBatch.getSampleCategoryWeight(), + speciesBatch.getSampleCategoryComputedWeight()); + + setRaisingFactor(row, referenceWeight, referenceWeight); + rows.add(row); + } + + protected void prepareSortedRows(PersistenceService persistenceService, + CatchExportRow currentRow, + List<CatchExportRow> rows, + BenthosBatch benthosBatch, + final float totalBatchWeight) { + + currentRow.addComment(benthosBatch.getComment()); + + prepareBatch(currentRow, + benthosBatch.getSampleCategoryId(), + benthosBatch.getSampleCategoryValue(), + benthosBatch.getSampleCategoryWeight(), + benthosBatch.getSampleCategoryComputedWeight(), + benthosBatch.getWeight(), + benthosBatch.getNumber(), + benthosBatch.getRankOrder()); + + if (benthosBatch.isChildBatchsEmpty()) { + + // on a leaf, get frequencies + + List<BenthosBatchFrequency> benthosBatchFrequency = + persistenceService.getAllBenthosBatchFrequency(benthosBatch.getId()); + + if (CollectionUtils.isEmpty(benthosBatchFrequency)) { + + // no frequency + + CatchExportRow row = currentRow.copy(); + + // Get reference weight + + Float referenceWeight = TuttiEntities.getValueOrComputedValue( + benthosBatch.getWeight(), + benthosBatch.getComputedWeight()); + + if (referenceWeight == null) { + referenceWeight = TuttiEntities.getValueOrComputedValue( + benthosBatch.getSampleCategoryWeight(), + benthosBatch.getSampleCategoryComputedWeight()); + } + + setRaisingFactor(row, totalBatchWeight, referenceWeight); + rows.add(row); + } else { + + // there is some frequencies + + Float referenceWeight = null; + + boolean withNoWeightOnFrequencies = + benthosBatchFrequency.get(0).getWeight() == null; + + if (withNoWeightOnFrequencies) { + + // no weight on frequencies use upper reference weight + + referenceWeight = TuttiEntities.getValueOrComputedValue( + benthosBatch.getWeight(), + benthosBatch.getComputedWeight()); + + if (referenceWeight == null) { + referenceWeight = TuttiEntities.getValueOrComputedValue( + benthosBatch.getSampleCategoryWeight(), + benthosBatch.getSampleCategoryComputedWeight()); + } + } + + for (BenthosBatchFrequency batchFrequency : benthosBatchFrequency) { + CatchExportRow row = currentRow.copy(); + row.setBenthosFrequency(batchFrequency); + rows.add(row); + + if (!withNoWeightOnFrequencies) { + + // use concrete frequency weight + referenceWeight = batchFrequency.getWeight(); + } + + setRaisingFactor(row, totalBatchWeight, referenceWeight); + } + } + + } else { + + for (BenthosBatch childBatch : benthosBatch.getChildBatchs()) { + prepareSortedRows(persistenceService, + currentRow, + rows, + childBatch, + totalBatchWeight); + } + } + + // remove last comment (otherwise next brother will have this one too...) + currentRow.popLastComment(); + } + + protected void prepareUnsortedRows(CatchExportRow currentRow, + List<CatchExportRow> rows, + BenthosBatch benthosBatch) { + + prepareBatch(currentRow, + benthosBatch.getSampleCategoryId(), + benthosBatch.getSampleCategoryValue(), + benthosBatch.getSampleCategoryWeight(), + benthosBatch.getSampleCategoryComputedWeight(), + benthosBatch.getWeight(), + benthosBatch.getNumber(), + benthosBatch.getRankOrder()); + + CatchExportRow row = currentRow.copy(); + row.addComment(benthosBatch.getComment()); + + Float referenceWeight = TuttiEntities.getValueOrComputedValue( + benthosBatch.getSampleCategoryWeight(), + benthosBatch.getSampleCategoryComputedWeight()); + + setRaisingFactor(row, referenceWeight, referenceWeight); + + rows.add(row); + } + + protected void setRaisingFactor(CatchExportRow row, + float totalBatchWeight, + Float referenceWeight) { + row.setReferenceWeight(referenceWeight); + row.setRaisingFactor(referenceWeight == null ? 1.0f : (totalBatchWeight / referenceWeight)); + } + + protected void prepareBatch(CatchExportRow currentRow, + Integer sampleCategoryId, + Serializable sampleCategoryValue, + Float sampleCategoryWeight, + Float sampleCategoryComputedWeight, + Float batchWeight, + Integer batchNumber, + Integer batchRankOrder) { + currentRow.setBatchNumber(batchNumber); + + ExportSampleCategory<Serializable> sampleCategory = + new ExportSampleCategory<Serializable>(); + SampleCategoryModelEntry categoryById = + sampleCategoryModel.getCategoryById(sampleCategoryId); + sampleCategory.setCategoryDef(categoryById); + sampleCategory.setCategoryValue(sampleCategoryValue); + sampleCategory.setCategoryWeight(sampleCategoryWeight); + sampleCategory.setSampleWeight(batchWeight); + + sampleCategory.setComputedWeight(sampleCategoryComputedWeight); + sampleCategory.setWeightOrVolType(WEIGHT_OR_VOL_TYPE); + sampleCategory.setRankOrder(batchRankOrder); + + currentRow.addSampleCategory(sampleCategory); + } + + protected void addSampleCategory(String headerPrefix, int categoryOrder) { + + String categoryName = CatchExportRow.SAMPLE_CATEGORY; + newIndexNullableColumnForExport(headerPrefix, categoryName, categoryOrder, ExportSampleCategory.PROPERTY_CATEGORY_VALUE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); + newIndexNullableColumnForExport("Num_Ordre_" + headerPrefix + "_H2", categoryName, categoryOrder, ExportSampleCategory.PROPERTY_RANK_ORDER, TuttiCsvUtil.INTEGER); + newIndexNullableColumnForExport("Tot_" + headerPrefix, categoryName, categoryOrder, ExportSampleCategory.PROPERTY_CATEGORY_WEIGHT, TuttiCsvUtil.FLOAT); + newIndexNullableColumnForExport("Ech_" + headerPrefix, categoryName, categoryOrder, ExportSampleCategory.PROPERTY_SAMPLE_WEIGHT, TuttiCsvUtil.FLOAT); + newIndexNullableColumnForExport("Type_Volume_Poids_" + headerPrefix, categoryName, categoryOrder, ExportSampleCategory.PROPERTY_WEIGHT_OR_VOL_TYPE); + newNullableColumnForExport("Unite_Volume_Poids_" + headerPrefix, CatchExportRow.BATCH_WEIGHT_UNIT); + } + +} \ No newline at end of file Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/CatchExportRow.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/CatchExportRow.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/CatchExportRow.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/CatchExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,254 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.base.Joiner; +import com.google.common.base.Preconditions; +import com.google.common.collect.Lists; +import fr.ifremer.tutti.persistence.entities.data.BenthosBatchFrequency; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; +import fr.ifremer.tutti.persistence.entities.referential.Gear; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.persistence.entities.referential.Vessel; +import org.apache.commons.lang3.StringUtils; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; + +import java.io.Serializable; +import java.util.Date; +import java.util.List; + +/** + * A row in a catch export. + * + * @author tchemit <chemit@codelutin.com> + * @since 1.3 + */ +public class CatchExportRow implements Serializable { + + private static final long serialVersionUID = 1L; + + /** Logger. */ + private static final Log log = LogFactory.getLog(CatchExportRow.class); + + public static final String FREQUENCY_LENGTH_STEP = "frequency.lengthStep"; + + public static final String FREQUENCY_NUMBER = "frequency.number"; + + public static final String FREQUENCY_WEIGHT = "frequency.weight"; + + public static final String FREQUENCY_LENGTH_STEP_CARACTERISTIC = "frequency.lengthStepCaracteristic"; + + public static final String FREQUENCY_RANK_ORDER = "frequency.rankOrder"; + + public static final String SAMPLE_CATEGORY = "sampleCategory"; + + public static final String REFERENCE_WEIGHT = "referenceWeight"; + + public static final String RAISING_FACTOR = "raisingFactor"; + + public static final String BATCH_NUMBER = "batchNumber"; + + public static final String BATCH_WEIGHT_UNIT = "batchWeightUnit"; + + protected Cruise cruise; + + protected FishingOperation fishingOperation; + + protected final List<ExportSampleCategory> sampleCategory = Lists.newLinkedList(); + + protected SpeciesBatchFrequency speciesFrequency; + + protected BenthosBatchFrequency benthosFrequency; + + protected Species species; + + protected Float referenceWeight; + + protected float raisingFactor; + + protected Integer batchNumber; + + protected String batchWeightUnit; + + protected final List<String> comment = Lists.newArrayList(); + + public void setCruise(Cruise cruise) { + this.cruise = cruise; + } + + public void setFishingOperation(FishingOperation fishingOperation) { + this.fishingOperation = fishingOperation; + } + + public void setReferenceWeight(Float referenceWeight) { + this.referenceWeight = referenceWeight; + } + + public void setRaisingFactor(float raisingFactor) { + this.raisingFactor = raisingFactor; + } + + public void setBatchNumber(Integer batchNumber) { + this.batchNumber = batchNumber; + } + + public void addSampleCategory(ExportSampleCategory sampleCategory) { + int order = sampleCategory.getCategoryDef().getOrder(); + while (this.sampleCategory.size() <= order) { + this.sampleCategory.add(null); + } + this.sampleCategory.set(order, sampleCategory); + } + + public void setSpeciesFrequency(SpeciesBatchFrequency speciesFrequency) { + Preconditions.checkNotNull(speciesFrequency); + this.speciesFrequency = speciesFrequency; + this.batchNumber = speciesFrequency.getNumber(); + } + + public void setBenthosFrequency(BenthosBatchFrequency benthosFrequency) { + Preconditions.checkNotNull(benthosFrequency); + this.benthosFrequency = benthosFrequency; + this.batchNumber = benthosFrequency.getNumber(); + } + + public Date getBeginDate() { + return cruise.getBeginDate(); + } + + public Program getProgram() { + return cruise.getProgram(); + } + + public String getSurveyPart() { + return cruise.getSurveyPart(); + } + + public Vessel getVessel() { + return cruise.getVessel(); + } + + public String getStationNumber() { + return fishingOperation.getStationNumber(); + } + + public Integer getFishingOperationNumber() { + return fishingOperation.getFishingOperationNumber(); + } + + public Gear getGear() { + return fishingOperation.getGear(); + } + + public String getMultirigAggregation() { + return fishingOperation.getMultirigAggregation(); + } + + public Object getFrequency() { + return speciesFrequency == null ? benthosFrequency : speciesFrequency; + } + + public List<ExportSampleCategory> getSampleCategory() { + return sampleCategory; + } + + public Species getSpecies() { + return species; + } + + public void setSpecies(Species species) { + this.species = species; + } + + public Float getReferenceWeight() { + return referenceWeight; + } + + public float getRaisingFactor() { + return raisingFactor; + } + + public Integer getBatchNumber() { + return batchNumber; + } + + public String getBatchWeightUnit() { + return batchWeightUnit; + } + + public void setBatchWeightUnit(String batchWeightUnit) { + this.batchWeightUnit = batchWeightUnit; + } + + public CatchExportRow copy() { + CatchExportRow result = new CatchExportRow(); + result.setCruise(cruise); + result.setFishingOperation(fishingOperation); +// result.setSpeciesCategory(speciesCategory); + result.sampleCategory.addAll(sampleCategory); + if (benthosFrequency != null) { + result.setBenthosFrequency(benthosFrequency); + } + if (speciesFrequency != null) { + result.setSpeciesFrequency(speciesFrequency); + } + result.setSpecies(species); + result.setRaisingFactor(raisingFactor); + result.setReferenceWeight(referenceWeight); + result.setBatchNumber(batchNumber); + result.setBatchWeightUnit(batchWeightUnit); + result.comment.addAll(comment); + + return result; + } + + public void addComment(String comment) { + String safeComment = StringUtils.isEmpty(comment) ? "" : comment; + if (log.isDebugEnabled()) { + log.debug("Add comment: " + safeComment); + } + this.comment.add(safeComment); + } + + public void popLastComment() { + if (!comment.isEmpty()) { + this.comment.remove(this.comment.size() - 1); + } + } + + public String getComment() { + String result; + if (comment.isEmpty()) { + result = ""; + } else { + result = Joiner.on('|').join(comment); + } + return result; + } +} \ No newline at end of file Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/ExportSampleCategory.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ExportSampleCategory.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/ExportSampleCategory.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/ExportSampleCategory.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,95 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.data.SampleCategory; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; + +import java.io.Serializable; + +/** + * Export sample category (extends {@link SampleCategory} to some computed + * stuff. + * + * @author tchemit <chemit@codelutin.com> + * @since 2.0 + */ +public class ExportSampleCategory<S extends Serializable> extends SampleCategory<S> { + + private static final long serialVersionUID = 1L; + + public static final String PROPERTY_CATEGORY_CARACTERISTIC = "categoryCaracteristic"; + + public static final String PROPERTY_CATEGORY_VALUE = "categoryValue"; + + public static final String PROPERTY_CATEGORY_WEIGHT = "categoryWeight"; + + public static final String PROPERTY_NUMBER = "number"; + + public static final String PROPERTY_COMPUTED_WEIGHT = "computedWeight"; + + public static final String PROPERTY_COMPUTED_NUMBER = "computedNumber"; + + public static final String PROPERTY_WEIGHT_OR_VOL_TYPE = "weightOrVolType"; + + public static final String PROPERTY_RANK_ORDER = "rankOrder"; + + public static final String PROPERTY_SAMPLE_WEIGHT = "sampleWeight"; + + private Integer rankOrder; + + private String weightOrVolType; + + private Float sampleWeight; + + public String getWeightOrVolType() { + return weightOrVolType; + } + + public void setWeightOrVolType(String weightOrVolType) { + this.weightOrVolType = weightOrVolType; + } + + public Integer getRankOrder() { + return rankOrder; + } + + public void setRankOrder(Integer rankOrder) { + this.rankOrder = rankOrder; + } + + public Float getSampleWeight() { + return sampleWeight; + } + + public void setSampleWeight(Float sampleWeight) { + this.sampleWeight = sampleWeight; + } + + public Caracteristic getCategoryCaracteristic() { + return categoryDef.getCaracteristic(); + } + +} Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/GearCaracteristicExportModel.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/GearCaracteristicExportModel.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/GearCaracteristicExportModel.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/GearCaracteristicExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,76 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.CaracteristicMap; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.Gear; +import fr.ifremer.tutti.service.DecoratorService; +import fr.ifremer.tutti.service.TuttiCsvUtil; + +import java.io.Serializable; +import java.util.List; +import java.util.Map; + +/** + * To export gear caracteristics. + * + * @author tchemit <chemit@codelutin.com> + * @since 2.3.2 + */ +public class GearCaracteristicExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<GearCaracteristicExportRow> { + + public GearCaracteristicExportModel(char separator, DecoratorService decoratorService) { + super(separator); + + newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); + newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); + newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); + newColumnForExport("Engin", GearCaracteristicExportRow.PROPERTY_GEAR, Gear.PROPERTY_NAME); + newColumnForExport("Code_PMFM", GearCaracteristicExportRow.PROPERTY_CARACTERISTIC, Caracteristic.PROPERTY_ID); + newColumnForExportByDecorator("Libelle_PMFM", GearCaracteristicExportRow.PROPERTY_CARACTERISTIC, decoratorService.getDecoratorByType(Caracteristic.class)); + newColumnForExport("Valeur", GearCaracteristicExportRow.PROPERTY_VALUE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); + } + + public void prepareRows(List<GearCaracteristicExportRow> rows, Cruise cruise, + Gear gear) { + CaracteristicMap caracteristics = gear.getCaracteristics(); + if (caracteristics != null) { + for (Map.Entry<Caracteristic, Serializable> entry : caracteristics.entrySet()) { + Caracteristic caracteristic = entry.getKey(); + Serializable value = entry.getValue(); + GearCaracteristicExportRow row = new GearCaracteristicExportRow(); + row.setCruise(cruise); + row.setGear(gear); + row.setCaracteristic(caracteristic); + row.setValue(value); + rows.add(row); + } + } + } + +} \ No newline at end of file Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/GearCaracteristicExportRow.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/GearCaracteristicExportRow.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/GearCaracteristicExportRow.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/GearCaracteristicExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,98 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.Gear; + +import java.io.Serializable; +import java.util.Date; + +/** + * A row in a gear caracteristics export. + * + * @author tchemit <chemit@codelutin.com> + * @since 2.3.2 + */ +public class GearCaracteristicExportRow implements Serializable { + + private static final long serialVersionUID = 1L; + + public static final String PROPERTY_GEAR = "gear"; + + public static final String PROPERTY_CARACTERISTIC = "caracteristic"; + + public static final String PROPERTY_VALUE = "value"; + + protected Cruise cruise; + + protected Gear gear; + + protected Caracteristic caracteristic; + + private Serializable value; + + public void setCruise(Cruise cruise) { + this.cruise = cruise; + } + + public void setGear(Gear gear) { + this.gear = gear; + } + + public void setCaracteristic(Caracteristic caracteristic) { + this.caracteristic = caracteristic; + } + + public void setValue(Serializable value) { + this.value = value; + } + + public Date getBeginDate() { + return cruise.getBeginDate(); + } + + public Program getProgram() { + return cruise.getProgram(); + } + + public String getSurveyPart() { + return cruise.getSurveyPart(); + } + + public Gear getGear() { + return gear; + } + + public Caracteristic getCaracteristic() { + return caracteristic; + } + + public Serializable getValue() { + return value; + } +} Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/IndividualObservationExportModel.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/IndividualObservationExportModel.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/IndividualObservationExportModel.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/IndividualObservationExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,170 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.CaracteristicMap; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.IndividualObservationBatch; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.Gear; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.TuttiCsvUtil; +import org.apache.commons.collections.CollectionUtils; +import org.apache.commons.collections.MapUtils; + +import java.io.Serializable; +import java.util.List; +import java.util.Map; + +/** + * Model of a individual observation export. + * + * @author tchemit <chemit@codelutin.com> + * @since 2.0.1 + */ +public class IndividualObservationExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<IndividualObservationExportRow> { + +// protected final Caracteristic caracteristicSample; +// +// protected final Caracteristic caracteristicOtolithe; + + protected final Caracteristic caracteristicWeight; + + protected final Caracteristic caracteristicPmfmId; + + public IndividualObservationExportModel( + char separator, +// Caracteristic caracteristicSample, +// Caracteristic caracteristicOtolithe, + Caracteristic caracteristicWeight, + Caracteristic caracteristicPmfmId) { + super(separator); + +// this.caracteristicSample = caracteristicSample; +// this.caracteristicOtolithe = caracteristicOtolithe; + this.caracteristicWeight = caracteristicWeight; + this.caracteristicPmfmId = caracteristicPmfmId; + + newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); + newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); + newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); + newNullableColumnForExport("Engin", FishingOperation.PROPERTY_GEAR + "." + Gear.PROPERTY_NAME); + newColumnForExport("Code_station", FishingOperation.PROPERTY_STATION_NUMBER); + newColumnForExport("Numero_Trait", FishingOperation.PROPERTY_FISHING_OPERATION_NUMBER, TuttiCsvUtil.INTEGER); + newColumnForExport("Poche", FishingOperation.PROPERTY_MULTIRIG_AGGREGATION); + newColumnForExport("Navire", Cruise.PROPERTY_VESSEL, TuttiCsvUtil.VESSEL_VALUE_FORMATTER); + + newColumnForExport("BatchId", IndividualObservationExportRow.PROPERTY_BATCH_ID, TuttiCsvUtil.PRIMITIVE_INTEGER); + newColumnForExport("ReferenceTaxonId", IndividualObservationBatch.PROPERTY_SPECIES + "." + Species.PROPERTY_REFERENCE_TAXON_ID, TuttiCsvUtil.PRIMITIVE_INTEGER); + newColumnForExport("ReferenceTaxonName", IndividualObservationBatch.PROPERTY_SPECIES + "." + Species.PROPERTY_NAME); + newColumnForExport("Commentaire", IndividualObservationBatch.PROPERTY_COMMENT); + newColumnForExport("CaracteristicId", IndividualObservationExportRow.PROPERTY_CARACTERISTIC, Caracteristic.PROPERTY_ID); + newColumnForExport("CaracteristicValue", IndividualObservationExportRow.PROPERTY_CARACTERISTIC_VALUE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); + } + + public void prepareRows(PersistenceService persistenceService, + List<IndividualObservationExportRow> rows, + Cruise cruise, + FishingOperation operation) { + + List<IndividualObservationBatch> observations = + persistenceService.getAllIndividualObservationBatch(operation.getId()); + + if (CollectionUtils.isNotEmpty(observations)) { + for (IndividualObservationBatch child : observations) { + +// addCaracteristicRow(rows, +// cruise, +// operation, +// child, +// caracteristicSample, +// child.getSamplingCode()); +// +// addCaracteristicRow(rows, +// cruise, +// operation, +// child, +// caracteristicOtolithe, +// child.getCalcifiedPieceSamplingCode()); + + addCaracteristicRow(rows, + cruise, + operation, + child, + caracteristicWeight, + child.getWeight()); + + if (child.getLengthStepCaracteristic() != null) { + addCaracteristicRow(rows, + cruise, + operation, + child, + caracteristicPmfmId, + child.getLengthStepCaracteristic().getIdAsInt()); + + addCaracteristicRow(rows, + cruise, + operation, + child, + child.getLengthStepCaracteristic(), + child.getSize()); + } + + CaracteristicMap caracteristics = child.getCaracteristics(); + if (MapUtils.isNotEmpty(caracteristics)) { + for (Map.Entry<Caracteristic, Serializable> entry : caracteristics.entrySet()) { + addCaracteristicRow(rows, + cruise, + operation, + child, + entry.getKey(), + entry.getValue()); + } + } + } + } + } + + private void addCaracteristicRow(List<IndividualObservationExportRow> rows, + Cruise cruise, + FishingOperation operation, + IndividualObservationBatch child, + Caracteristic caracteristic, + Serializable caracteristicValue) { + if (caracteristicValue != null) { + + IndividualObservationExportRow row = new IndividualObservationExportRow(); + row.setCruise(cruise); + row.setFishingOperation(operation); + row.setBatch(child); + row.setCaracteristic(caracteristic); + row.setCaracteristicValue(caracteristicValue); + rows.add(row); + } + } +} Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/IndividualObservationExportRow.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/IndividualObservationExportRow.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/IndividualObservationExportRow.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/IndividualObservationExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,138 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.IndividualObservationBatch; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.Gear; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.persistence.entities.referential.Vessel; + +import java.io.Serializable; +import java.util.Date; + +/** + * A row in a individual observation export. + * + * @author tchemit <chemit@codelutin.com> + * @since 2.0.1 + */ +public class IndividualObservationExportRow implements Serializable { + + public static final String PROPERTY_BATCH = "batch"; + + private static final long serialVersionUID = 1L; + + public static final String PROPERTY_BATCH_ID = "batchId"; + + public static final String PROPERTY_CARACTERISTIC = "caracteristic"; + + public static final String PROPERTY_CARACTERISTIC_VALUE = "caracteristicValue"; + + protected Cruise cruise; + + protected FishingOperation fishingOperation; + + protected IndividualObservationBatch batch; + + protected Caracteristic caracteristic; + + protected Serializable caracteristicValue; + + public void setCruise(Cruise cruise) { + this.cruise = cruise; + } + + public void setFishingOperation(FishingOperation fishingOperation) { + this.fishingOperation = fishingOperation; + } + + public void setBatch(IndividualObservationBatch batch) { + this.batch = batch; + } + + public void setCaracteristic(Caracteristic caracteristic) { + this.caracteristic = caracteristic; + } + + public void setCaracteristicValue(Serializable caracteristicValue) { + this.caracteristicValue = caracteristicValue; + } + + public Integer getBatchId() { + return batch.getIdAsInt(); + } + + public Caracteristic getCaracteristic() { + return caracteristic; + } + + public Serializable getCaracteristicValue() { + return caracteristicValue; + } + + public String getComment() { + return batch.getComment(); + } + + public Date getBeginDate() { + return cruise.getBeginDate(); + } + + public Program getProgram() { + return cruise.getProgram(); + } + + public String getSurveyPart() { + return cruise.getSurveyPart(); + } + + public String getStationNumber() { + return fishingOperation.getStationNumber(); + } + + public Integer getFishingOperationNumber() { + return fishingOperation.getFishingOperationNumber(); + } + + public Gear getGear() { + return fishingOperation.getGear(); + } + + public Vessel getVessel() { + return fishingOperation.getVessel(); + } + + public String getMultirigAggregation() { + return fishingOperation.getMultirigAggregation(); + } + + public Species getSpecies() { + return batch.getSpecies(); + } +} Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/MarineLitterExportModel.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/MarineLitterExportModel.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/MarineLitterExportModel.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/MarineLitterExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,85 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.MarineLitterBatch; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.referential.Gear; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.TuttiCsvUtil; +import org.apache.commons.collections.CollectionUtils; + +import java.util.List; + +/** + * Model of a marine litter export. + * + * @author tchemit <chemit@codelutin.com> + * @since 2.0.1 + */ +public class MarineLitterExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<MarineLitterExportRow> { + + public MarineLitterExportModel(char separator) { + super(separator); + + newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); + newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); + newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); + newNullableColumnForExport("Engin", FishingOperation.PROPERTY_GEAR + "." + Gear.PROPERTY_NAME); + newColumnForExport("Code_station", FishingOperation.PROPERTY_STATION_NUMBER); + newColumnForExport("Numero_Trait", FishingOperation.PROPERTY_FISHING_OPERATION_NUMBER, TuttiCsvUtil.INTEGER); + newColumnForExport("Poche", FishingOperation.PROPERTY_MULTIRIG_AGGREGATION); + newColumnForExport("Navire", Cruise.PROPERTY_VESSEL, TuttiCsvUtil.VESSEL_VALUE_FORMATTER); + + newColumnForExport("MarineLitterCategory", MarineLitterBatch.PROPERTY_MARINE_LITTER_CATEGORY, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); + newColumnForExport("MarineLitterSizeCategory", MarineLitterBatch.PROPERTY_MARINE_LITTER_SIZE_CATEGORY, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); + newColumnForExport("Number", MarineLitterBatch.PROPERTY_NUMBER, TuttiCsvUtil.INTEGER); + newColumnForExport("Weight", MarineLitterBatch.PROPERTY_WEIGHT, TuttiCsvUtil.FLOAT); + newColumnForExport("Commentaire", MarineLitterBatch.PROPERTY_COMMENT); + } + + public void prepareRows(PersistenceService persistenceService, + List<MarineLitterExportRow> rows, + Cruise cruise, + FishingOperation operation) { + + BatchContainer<MarineLitterBatch> rootMarineLitterBatch = + persistenceService.getRootMarineLitterBatch(operation.getId()); + + List<MarineLitterBatch> children = rootMarineLitterBatch.getChildren(); + if (CollectionUtils.isNotEmpty(children)) { + for (MarineLitterBatch child : children) { + MarineLitterExportRow row = new MarineLitterExportRow(); + row.setCruise(cruise); + row.setFishingOperation(operation); + row.setBatch(child); + rows.add(row); + } + } + } +} Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/MarineLitterExportRow.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/MarineLitterExportRow.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/MarineLitterExportRow.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/MarineLitterExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,121 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.MarineLitterBatch; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; +import fr.ifremer.tutti.persistence.entities.referential.Gear; +import fr.ifremer.tutti.persistence.entities.referential.Vessel; + +import java.io.Serializable; +import java.util.Date; + +/** + * A row in a marine litter export. + * + * @author tchemit <chemit@codelutin.com> + * @since 2.0.1 + */ +public class MarineLitterExportRow implements Serializable { + + public static final String PROPERTY_TOTAL_WEIGHT = "totalWeight"; + + public static final String PROPERTY_BATCH = "batch"; + + private static final long serialVersionUID = 1L; + + protected Cruise cruise; + + protected FishingOperation fishingOperation; + + protected MarineLitterBatch batch; + + public void setCruise(Cruise cruise) { + this.cruise = cruise; + } + + public void setFishingOperation(FishingOperation fishingOperation) { + this.fishingOperation = fishingOperation; + } + + public void setBatch(MarineLitterBatch batch) { + this.batch = batch; + } + + public CaracteristicQualitativeValue getMarineLitterCategory() { + return batch.getMarineLitterCategory(); + } + + public CaracteristicQualitativeValue getMarineLitterSizeCategory() { + return batch.getMarineLitterSizeCategory(); + } + + public Integer getNumber() { + return batch.getNumber(); + } + + public Float getWeight() { + return batch.getWeight(); + } + + public String getComment() { + return batch.getComment(); + } + + public Date getBeginDate() { + return cruise.getBeginDate(); + } + + public Program getProgram() { + return cruise.getProgram(); + } + + public String getSurveyPart() { + return cruise.getSurveyPart(); + } + + public String getStationNumber() { + return fishingOperation.getStationNumber(); + } + + public Integer getFishingOperationNumber() { + return fishingOperation.getFishingOperationNumber(); + } + + public Gear getGear() { + return fishingOperation.getGear(); + } + + public Vessel getVessel() { + return fishingOperation.getVessel(); + } + + public String getMultirigAggregation() { + return fishingOperation.getMultirigAggregation(); + } +} Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/OperationExportModel.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/OperationExportModel.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/OperationExportModel.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/OperationExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,166 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.Gear; +import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; +import fr.ifremer.tutti.persistence.entities.referential.Vessel; +import fr.ifremer.tutti.service.TuttiCsvUtil; +import org.nuiton.decorator.Decorator; + +import java.util.List; + +/** + * Model of a operation export. + * + * @author tchemit <chemit@codelutin.com> + * @since 1.3 + */ +public class OperationExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<OperationExportRow> { + + + protected final Caracteristic verticalOpeningCaracteristic; + + protected final Caracteristic horizontalOpeningWingCaracteristic; + + protected final Caracteristic horizontalOpeningDoorCaracteristic; + + public OperationExportModel(char separator, + Caracteristic verticalOpeningCaracteristic, + Caracteristic horizontalOpeningWingCaracteristic, + Caracteristic horizontalOpeningDoorCaracteristic, + Decorator<Vessel> vesselDecorator) { + super(separator); + this.verticalOpeningCaracteristic = verticalOpeningCaracteristic; + this.horizontalOpeningWingCaracteristic = horizontalOpeningWingCaracteristic; + this.horizontalOpeningDoorCaracteristic = horizontalOpeningDoorCaracteristic; + newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); + newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); + newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); + newColumnForExport("Code_Station", FishingOperation.PROPERTY_STATION_NUMBER); + newColumnForExport("Numero_Trait", FishingOperation.PROPERTY_FISHING_OPERATION_NUMBER, TuttiCsvUtil.INTEGER); + newColumnForExport("Poche", FishingOperation.PROPERTY_MULTIRIG_AGGREGATION); + + newNullableColumnForExport("Engin", FishingOperation.PROPERTY_GEAR + "." + Gear.PROPERTY_NAME); + newColumnForExport("Navire", FishingOperation.PROPERTY_VESSEL, TuttiCsvUtil.VESSEL_VALUE_FORMATTER); + newColumnForExport("DateDeb_Op", FishingOperation.PROPERTY_GEAR_SHOOTING_START_DATE, TuttiCsvUtil.DAY_TIME_SECOND); + newColumnForExport("LatDeb", FishingOperation.PROPERTY_GEAR_SHOOTING_START_LATITUDE, TuttiCsvUtil.FLOAT); + newColumnForExport("LongDeb", FishingOperation.PROPERTY_GEAR_SHOOTING_START_LONGITUDE, TuttiCsvUtil.FLOAT); + newColumnForExport("DateFin_Op", FishingOperation.PROPERTY_GEAR_SHOOTING_END_DATE, TuttiCsvUtil.DAY_TIME_SECOND); + newColumnForExport("LatFin", FishingOperation.PROPERTY_GEAR_SHOOTING_END_LATITUDE, TuttiCsvUtil.FLOAT); + newColumnForExport("LongFin", FishingOperation.PROPERTY_GEAR_SHOOTING_END_LONGITUDE, TuttiCsvUtil.FLOAT); + newColumnForExport("Duree", OperationExportRow.PROPERTY_DURATION); + newColumnForExport("Strate", FishingOperation.PROPERTY_STRATA, TuttiLocation.PROPERTY_NAME, "NA"); + newColumnForExport("Sous-Strate", FishingOperation.PROPERTY_SUB_STRATA, TuttiLocation.PROPERTY_NAME, "NA"); + newColumnForExport("Localite", FishingOperation.PROPERTY_LOCATION, TuttiLocation.PROPERTY_NAME, "NA"); + newColumnForExport("Validite_OP", FishingOperation.PROPERTY_FISHING_OPERATION_VALID, TuttiCsvUtil.BOOLEAN); + newColumnForExport("Rectiligne", FishingOperation.PROPERTY_FISHING_OPERATION_RECTILIGNE, TuttiCsvUtil.BOOLEAN); + newColumnForExport("Distance", FishingOperation.PROPERTY_TRAWL_DISTANCE, TuttiCsvUtil.FLOAT); + newColumnForExport("Ouv_Verticale", OperationExportRow.PROPERTY_VERTICAL_OPENING_GEAR_USE_FEATURE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); + newColumnForExport("Ouv_Horizontale_Ailes", OperationExportRow.PROPERTY_HORIZONTAL_OPENING_WING_GEAR_USE_FEATURE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); + newColumnForExport("Ouv_Horizontale_Panneaux", OperationExportRow.PROPERTY_HORIZONTAL_OPENING_DOOR_GEAR_USE_FEATURE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); + newColumnForExport("Saisisseur", FishingOperation.PROPERTY_RECORDER_PERSON, TuttiCsvUtil.LIST_PERSON_FORMATTER); + newColumnForExport("NavireAssocie", FishingOperation.PROPERTY_SECONDARY_VESSEL, TuttiCsvUtil.newListVesselFormatter(vesselDecorator)); + newColumnForExport("Commentaire", FishingOperation.PROPERTY_COMMENT); + + newNullableColumnForExport("Poids_Total", OperationExportRow.PROPERTY_CATCH_TOTAL_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Calcule", OperationExportRow.PROPERTY_CATCH_TOTAL_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Vrac", OperationExportRow.PROPERTY_CATCH_TOTAL_SORTED_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Vrac_Calcule", OperationExportRow.PROPERTY_CATCH_TOTAL_SORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_HorsVrac", OperationExportRow.PROPERTY_CATCH_TOTAL_UNSORTED_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_HorsVrac_Calcule", OperationExportRow.PROPERTY_CATCH_TOTAL_UNSORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Non_Trie", OperationExportRow.PROPERTY_CATCH_TOTAL_REJECTED_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Non_Trie_Calcule", OperationExportRow.PROPERTY_CATCH_TOTAL_REJECTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Tremis", OperationExportRow.PROPERTY_CATCH_TOTAL_SORTED_TREMIS_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Tremis_Calcule", OperationExportRow.PROPERTY_CATCH_TOTAL_SORTED_TREMIS_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Carroussel", OperationExportRow.PROPERTY_CATCH_TOTAL_SORTED_CAROUSSEL_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Carroussel_Calcule", OperationExportRow.PROPERTY_CATCH_TOTAL_SORTED_CAROUSSEL_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Espece", OperationExportRow.PROPERTY_SPECIES_TOTAL_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Espece_Calcule", OperationExportRow.PROPERTY_SPECIES_TOTAL_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Espece_Vrac", OperationExportRow.PROPERTY_SPECIES_TOTAL_SORTED_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Espece_Vrac_Calcule", OperationExportRow.PROPERTY_SPECIES_TOTAL_SORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Espece_Vrac_Trie", OperationExportRow.PROPERTY_SPECIES_TOTAL_SAMPLE_SORTED_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Espece_Vrac_Trie_Calcule", OperationExportRow.PROPERTY_SPECIES_TOTAL_SAMPLE_SORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Espece_HorsVrac", OperationExportRow.PROPERTY_SPECIES_TOTAL_UNSORTED_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Espece_HorsVrac_Calcule", OperationExportRow.PROPERTY_SPECIES_TOTAL_UNSORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Espece_Inerte_Trie", OperationExportRow.PROPERTY_SPECIES_TOTAL_INERT_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Espece_Inerte_Trie_Calcule", OperationExportRow.PROPERTY_SPECIES_TOTAL_INERT_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Espece_Vivant_non_detaille_trie", OperationExportRow.PROPERTY_SPECIES_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Espece_Vivant_non_detaille_trie_Calcule", OperationExportRow.PROPERTY_SPECIES_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Benthos", OperationExportRow.PROPERTY_BENTHOS_TOTAL_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Benthos_Calcule", OperationExportRow.PROPERTY_BENTHOS_TOTAL_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Benthos_Vrac", OperationExportRow.PROPERTY_BENTHOS_TOTAL_SORTED_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Benthos_Vrac_Calcule", OperationExportRow.PROPERTY_BENTHOS_TOTAL_SORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Benthos_Vrac_Trie", OperationExportRow.PROPERTY_BENTHOS_TOTAL_SAMPLE_SORTED_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Benthos_Vrac_Trie_Calcule", OperationExportRow.PROPERTY_BENTHOS_TOTAL_SAMPLE_SORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Benthos_HorsVrac", OperationExportRow.PROPERTY_BENTHOS_TOTAL_UNSORTED_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Benthos_HorsVrac_Calcule", OperationExportRow.PROPERTY_BENTHOS_TOTAL_UNSORTED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Benthos_Inerte_Trie", OperationExportRow.PROPERTY_BENTHOS_TOTAL_INERT_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Benthos_Inerte_Trie_Calcule", OperationExportRow.PROPERTY_BENTHOS_TOTAL_INERT_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Benthos_Vivant_non_detaille_trie", OperationExportRow.PROPERTY_BENTHOS_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Benthos_Vivant_non_detaille_trie_Calcule", OperationExportRow.PROPERTY_BENTHOS_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + + newNullableColumnForExport("Poids_Total_Macro_Dechet", OperationExportRow.PROPERTY_MARINE_LITTER_TOTAL_WEIGHT, TuttiCsvUtil.FLOAT); + newNullableColumnForExport("Poids_Total_Macro_Dechet_Calcule", OperationExportRow.PROPERTY_MARINE_LITTER_TOTAL_WEIGHT_COMPUTED, TuttiCsvUtil.BOOLEAN); + } + + public void prepareRows(List<OperationExportRow> rows, + Cruise cruise, + FishingOperation operation, + CatchBatch catchBatch) { + + OperationExportRow row = new OperationExportRow( + verticalOpeningCaracteristic, + horizontalOpeningWingCaracteristic, + horizontalOpeningDoorCaracteristic); + row.setCruise(cruise); + row.setFishingOperation(operation); + row.setCatchBatch(catchBatch); + rows.add(row); + + } +} \ No newline at end of file Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/OperationExportRow.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/OperationExportRow.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/OperationExportRow.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/OperationExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,499 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.CaracteristicMap; +import fr.ifremer.tutti.persistence.entities.TuttiEntities; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.Gear; +import fr.ifremer.tutti.persistence.entities.referential.Person; +import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; +import fr.ifremer.tutti.persistence.entities.referential.Vessel; + +import java.io.Serializable; +import java.util.Date; +import java.util.List; + +/** + * A row in a operation export. + * + * @author tchemit <chemit@codelutin.com> + * @since 1.3 + */ +public class OperationExportRow implements Serializable { + + public static final String PROPERTY_DURATION = "duration"; + + public static final String PROPERTY_VERTICAL_OPENING_GEAR_USE_FEATURE = "verticalOpeningGearUseFeature"; + + public static final String PROPERTY_HORIZONTAL_OPENING_WING_GEAR_USE_FEATURE = "horizontalOpeningWingGearUseFeature"; + + public static final String PROPERTY_HORIZONTAL_OPENING_DOOR_GEAR_USE_FEATURE = "horizontalOpeningDoorGearUseFeature"; + + public static final String PROPERTY_CATCH_TOTAL_WEIGHT = "catchTotalWeight"; + + public static final String PROPERTY_CATCH_TOTAL_WEIGHT_COMPUTED = "catchTotalWeightComputed"; + + public static final String PROPERTY_CATCH_TOTAL_SORTED_TREMIS_WEIGHT = "catchTotalSortedTremisWeight"; + + public static final String PROPERTY_CATCH_TOTAL_SORTED_TREMIS_WEIGHT_COMPUTED = "catchTotalSortedTremisWeightComputed"; + + public static final String PROPERTY_CATCH_TOTAL_SORTED_CAROUSSEL_WEIGHT = "catchTotalSortedCarousselWeight"; + + public static final String PROPERTY_CATCH_TOTAL_SORTED_CAROUSSEL_WEIGHT_COMPUTED = "catchTotalSortedCarousselWeightComputed"; + + public static final String PROPERTY_CATCH_TOTAL_SORTED_WEIGHT = "catchTotalSortedWeight"; + + public static final String PROPERTY_CATCH_TOTAL_SORTED_WEIGHT_COMPUTED = "catchTotalSortedWeightComputed"; + + public static final String PROPERTY_CATCH_TOTAL_UNSORTED_WEIGHT = "catchTotalUnsortedWeight"; + + public static final String PROPERTY_CATCH_TOTAL_UNSORTED_WEIGHT_COMPUTED = "catchTotalUnsortedWeightComputed"; + + public static final String PROPERTY_CATCH_TOTAL_REJECTED_WEIGHT = "catchTotalRejectedWeight"; + + public static final String PROPERTY_CATCH_TOTAL_REJECTED_WEIGHT_COMPUTED = "catchTotalRejectedWeightComputed"; + + + public static final String PROPERTY_SPECIES_TOTAL_WEIGHT = "speciesTotalWeight"; + + public static final String PROPERTY_SPECIES_TOTAL_WEIGHT_COMPUTED = "speciesTotalWeightComputed"; + + public static final String PROPERTY_SPECIES_TOTAL_SORTED_WEIGHT = "speciesTotalSortedWeight"; + + public static final String PROPERTY_SPECIES_TOTAL_SORTED_WEIGHT_COMPUTED = "speciesTotalSortedWeightComputed"; + + public static final String PROPERTY_SPECIES_TOTAL_UNSORTED_WEIGHT = "speciesTotalUnsortedWeight"; + + public static final String PROPERTY_SPECIES_TOTAL_UNSORTED_WEIGHT_COMPUTED = "speciesTotalUnsortedWeightComputed"; + + public static final String PROPERTY_SPECIES_TOTAL_SAMPLE_SORTED_WEIGHT = "speciesTotalSampleSortedWeight"; + + public static final String PROPERTY_SPECIES_TOTAL_SAMPLE_SORTED_WEIGHT_COMPUTED = "speciesTotalSampleSortedWeightComputed"; + + public static final String PROPERTY_SPECIES_TOTAL_INERT_WEIGHT = "speciesTotalInertWeight"; + + public static final String PROPERTY_SPECIES_TOTAL_INERT_WEIGHT_COMPUTED = "speciesTotalInertWeightComputed"; + + public static final String PROPERTY_SPECIES_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT = "speciesTotalLivingNotItemizedWeight"; + + public static final String PROPERTY_SPECIES_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT_COMPUTED = "speciesTotalLivingNotItemizedWeightComputed"; + + public static final String PROPERTY_BENTHOS_TOTAL_WEIGHT = "benthosTotalWeight"; + + public static final String PROPERTY_BENTHOS_TOTAL_WEIGHT_COMPUTED = "benthosTotalWeightComputed"; + + public static final String PROPERTY_BENTHOS_TOTAL_SORTED_WEIGHT = "benthosTotalSortedWeight"; + + public static final String PROPERTY_BENTHOS_TOTAL_SORTED_WEIGHT_COMPUTED = "benthosTotalSortedWeightComputed"; + + public static final String PROPERTY_BENTHOS_TOTAL_UNSORTED_WEIGHT = "benthosTotalUnsortedWeight"; + + public static final String PROPERTY_BENTHOS_TOTAL_UNSORTED_WEIGHT_COMPUTED = "benthosTotalUnsortedWeightComputed"; + + public static final String PROPERTY_BENTHOS_TOTAL_SAMPLE_SORTED_WEIGHT = "benthosTotalSampleSortedWeight"; + + public static final String PROPERTY_BENTHOS_TOTAL_SAMPLE_SORTED_WEIGHT_COMPUTED = "benthosTotalSampleSortedWeightComputed"; + + public static final String PROPERTY_BENTHOS_TOTAL_INERT_WEIGHT = "benthosTotalInertWeight"; + + public static final String PROPERTY_BENTHOS_TOTAL_INERT_WEIGHT_COMPUTED = "benthosTotalInertWeightComputed"; + + public static final String PROPERTY_BENTHOS_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT = "benthosTotalLivingNotItemizedWeight"; + + public static final String PROPERTY_BENTHOS_TOTAL_LIVING_NOT_ITEMIZED_WEIGHT_COMPUTED = "benthosTotalLivingNotItemizedWeightComputed"; + + public static final String PROPERTY_MARINE_LITTER_TOTAL_WEIGHT = "marineLitterTotalWeight"; + + public static final String PROPERTY_MARINE_LITTER_TOTAL_WEIGHT_COMPUTED = "marineLitterTotalWeightComputed"; + + private static final long serialVersionUID = 1L; + + protected Cruise cruise; + + protected FishingOperation fishingOperation; + + protected CatchBatch catchBatch; + + private Caracteristic verticalOpeningCaracteristic; + + private Caracteristic horizontalOpeningWingCaracteristic; + + private Caracteristic horizontalOpeningDoorCaracteristic; + + public OperationExportRow(Caracteristic verticalOpeningCaracteristic, + Caracteristic horizontalOpeningWingCaracteristic, + Caracteristic horizontalOpeningDoorCaracteristic) { + + this.verticalOpeningCaracteristic = verticalOpeningCaracteristic; + this.horizontalOpeningWingCaracteristic = horizontalOpeningWingCaracteristic; + this.horizontalOpeningDoorCaracteristic = horizontalOpeningDoorCaracteristic; + } + + public void setCruise(Cruise cruise) { + this.cruise = cruise; + } + + public void setFishingOperation(FishingOperation fishingOperation) { + this.fishingOperation = fishingOperation; + } + + public void setCatchBatch(CatchBatch catchBatch) { + this.catchBatch = catchBatch; + } + + public Date getBeginDate() { + return cruise.getBeginDate(); + } + + public Program getProgram() { + return cruise.getProgram(); + } + + public String getSurveyPart() { + return cruise.getSurveyPart(); + } + + public String getStationNumber() { + return fishingOperation.getStationNumber(); + } + + public Integer getFishingOperationNumber() { + return fishingOperation.getFishingOperationNumber(); + } + + public String getMultirigAggregation() { + return fishingOperation.getMultirigAggregation(); + } + + public Gear getGear() { + return fishingOperation.getGear(); + } + + public Vessel getVessel() { + return fishingOperation.getVessel(); + } + + public Date getGearShootingStartDate() { + return fishingOperation.getGearShootingStartDate(); + } + + public Float getGearShootingStartLatitude() { + return fishingOperation.getGearShootingStartLatitude(); + } + + public Float getGearShootingStartLongitude() { + return fishingOperation.getGearShootingStartLongitude(); + } + + public Date getGearShootingEndDate() { + return fishingOperation.getGearShootingEndDate(); + } + + public Float getGearShootingEndLatitude() { + return fishingOperation.getGearShootingEndLatitude(); + } + + public Float getGearShootingEndLongitude() { + return fishingOperation.getGearShootingEndLongitude(); + } + + public TuttiLocation getStrata() { + return fishingOperation.getStrata(); + } + + public TuttiLocation getSubStrata() { + return fishingOperation.getSubStrata(); + } + + public TuttiLocation getLocation() { + return fishingOperation.getLocation(); + } + + public Boolean getFishingOperationValid() { + return fishingOperation.getFishingOperationValid(); + } + + public boolean isFishingOperationRectiligne() { + return fishingOperation.isFishingOperationRectiligne(); + } + + public Float getTrawlDistance() { + return fishingOperation.getTrawlDistance(); + } + + public String getComment() { + return fishingOperation.getComment(); + } + + public List<Person> getRecorderPerson() { + return fishingOperation.getRecorderPerson(); + } + + public List<Vessel> getSecondaryVessel() { + return fishingOperation.getSecondaryVessel(); + } + + public String getDuration() { + return TuttiEntities.getDuration( + getGearShootingStartDate(), + getGearShootingEndDate(), + "mm"); + } + + public Serializable getVerticalOpeningGearUseFeature() { + Serializable result = getGearUseFeature(verticalOpeningCaracteristic); + return result; + } + + public Serializable getHorizontalOpeningWingGearUseFeature() { + Serializable result = getGearUseFeature(horizontalOpeningWingCaracteristic); + return result; + } + + public Serializable getHorizontalOpeningDoorGearUseFeature() { + Serializable result = getGearUseFeature(horizontalOpeningDoorCaracteristic); + return result; + } + + public Float getCatchTotalWeight() { + return TuttiEntities.getValueOrComputedValue( + catchBatch.getCatchTotalWeight(), + catchBatch.getCatchTotalComputedWeight()); + } + + public Boolean getCatchTotalWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + catchBatch.getCatchTotalWeight(), + catchBatch.getCatchTotalComputedWeight()); + } + + public Float getCatchTotalSortedTremisWeight() { + return TuttiEntities.getValueOrComputedValue( + catchBatch.getCatchTotalSortedTremisWeight(), null); + } + + public Boolean getCatchTotalSortedTremisWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + catchBatch.getCatchTotalSortedTremisWeight(), null); + } + + public Float getCatchTotalSortedCarousselWeight() { + return TuttiEntities.getValueOrComputedValue( + catchBatch.getCatchTotalSortedCarousselWeight(), null); + } + + public Boolean getCatchTotalSortedCarousselWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + catchBatch.getCatchTotalSortedCarousselWeight(), null); + } + + public Float getCatchTotalSortedWeight() { + return TuttiEntities.getValueOrComputedValue( + null, catchBatch.getCatchTotalSortedComputedWeight()); + } + + public Boolean getCatchTotalSortedWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + null, catchBatch.getCatchTotalSortedComputedWeight()); + } + + public Float getCatchTotalUnsortedWeight() { + return TuttiEntities.getValueOrComputedValue( + null, catchBatch.getCatchTotalUnsortedComputedWeight()); + } + + public Boolean getCatchTotalUnsortedWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + null, catchBatch.getCatchTotalUnsortedComputedWeight()); + } + + public Float getCatchTotalRejectedWeight() { + return TuttiEntities.getValueOrComputedValue( + catchBatch.getCatchTotalRejectedWeight(), + catchBatch.getCatchTotalRejectedComputedWeight()); + } + + public Boolean getCatchTotalRejectedWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + catchBatch.getCatchTotalRejectedWeight(), + catchBatch.getCatchTotalRejectedComputedWeight()); + } + + public Float getSpeciesTotalWeight() { + return TuttiEntities.getValueOrComputedValue( + null, catchBatch.getSpeciesTotalComputedWeight()); + } + + public Boolean getSpeciesTotalWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + null, catchBatch.getSpeciesTotalComputedWeight()); + } + + public Float getSpeciesTotalSortedWeight() { + return TuttiEntities.getValueOrComputedValue( + catchBatch.getSpeciesTotalSortedWeight(), + catchBatch.getSpeciesTotalSortedComputedWeight()); + } + + public Boolean getSpeciesTotalSortedWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + catchBatch.getSpeciesTotalSortedWeight(), + catchBatch.getSpeciesTotalSortedComputedWeight()); + } + + public Float getSpeciesTotalUnsortedWeight() { + return TuttiEntities.getValueOrComputedValue( + null, catchBatch.getSpeciesTotalUnsortedComputedWeight()); + } + + public Boolean getSpeciesTotalUnsortedWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + null, catchBatch.getSpeciesTotalUnsortedComputedWeight()); + } + + public Float getSpeciesTotalSampleSortedWeight() { + return TuttiEntities.getValueOrComputedValue( + catchBatch.getSpeciesTotalSampleSortedComputedWeight(), + catchBatch.getSpeciesTotalSampleSortedComputedWeight()); + } + + public Boolean getSpeciesTotalSampleSortedWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + null, catchBatch.getSpeciesTotalSampleSortedComputedWeight()); + } + + public Float getSpeciesTotalInertWeight() { + return TuttiEntities.getValueOrComputedValue( + catchBatch.getSpeciesTotalInertWeight(), + catchBatch.getSpeciesTotalInertComputedWeight()); + } + + public Boolean getSpeciesTotalInertWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + catchBatch.getSpeciesTotalInertWeight(), + catchBatch.getSpeciesTotalInertComputedWeight()); + } + + public Float getSpeciesTotalLivingNotItemizedWeight() { + return TuttiEntities.getValueOrComputedValue( + catchBatch.getSpeciesTotalLivingNotItemizedWeight(), + catchBatch.getSpeciesTotalLivingNotItemizedComputedWeight()); + } + + public Boolean getSpeciesTotalLivingNotItemizedWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + catchBatch.getSpeciesTotalLivingNotItemizedWeight(), + catchBatch.getSpeciesTotalLivingNotItemizedComputedWeight()); + } + + public Float getBenthosTotalWeight() { + return TuttiEntities.getValueOrComputedValue( + null, catchBatch.getBenthosTotalComputedWeight()); + } + + public Boolean getBenthosTotalWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + null, catchBatch.getBenthosTotalComputedWeight()); + } + + public Float getBenthosTotalSortedWeight() { + return TuttiEntities.getValueOrComputedValue( + catchBatch.getBenthosTotalSortedWeight(), + catchBatch.getBenthosTotalSortedComputedWeight()); + } + + public Boolean getBenthosTotalSortedWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + catchBatch.getBenthosTotalSortedWeight(), + catchBatch.getBenthosTotalSortedComputedWeight()); + } + + public Float getBenthosTotalUnsortedWeight() { + return TuttiEntities.getValueOrComputedValue( + null, catchBatch.getBenthosTotalUnsortedComputedWeight()); + } + + public Boolean getBenthosTotalUnsortedWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + null, catchBatch.getBenthosTotalUnsortedComputedWeight()); + } + + public Float getBenthosTotalSampleSortedWeight() { + return TuttiEntities.getValueOrComputedValue( + null, catchBatch.getBenthosTotalSampleSortedComputedWeight()); + } + + public Boolean getBenthosTotalSampleSortedWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + null, catchBatch.getBenthosTotalSampleSortedComputedWeight()); + } + + public Float getBenthosTotalInertWeight() { + return TuttiEntities.getValueOrComputedValue( + catchBatch.getBenthosTotalInertWeight(), + catchBatch.getBenthosTotalInertComputedWeight()); + } + + public Boolean getBenthosTotalInertWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + catchBatch.getBenthosTotalInertWeight(), + catchBatch.getBenthosTotalInertComputedWeight()); + } + + public Float getBenthosTotalLivingNotItemizedWeight() { + return TuttiEntities.getValueOrComputedValue( + catchBatch.getBenthosTotalLivingNotItemizedWeight(), + catchBatch.getBenthosTotalLivingNotItemizedComputedWeight()); + } + + public Boolean getBenthosTotalLivingNotItemizedWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + catchBatch.getBenthosTotalLivingNotItemizedWeight(), + catchBatch.getBenthosTotalLivingNotItemizedComputedWeight()); + } + + public Float getMarineLitterTotalWeight() { + return TuttiEntities.getValueOrComputedValue( + catchBatch.getMarineLitterTotalWeight(), + catchBatch.getMarineLitterTotalComputedWeight()); + } + + public Boolean getMarineLitterTotalWeightComputed() { + return TuttiEntities.getValueOrComputedValueComputed( + catchBatch.getMarineLitterTotalWeight(), + catchBatch.getMarineLitterTotalComputedWeight()); + } + + protected Serializable getGearUseFeature(Caracteristic caracteristic) { + CaracteristicMap gearUseFeatures = fishingOperation.getGearUseFeatures(); + Serializable serializable = gearUseFeatures == null ? null : gearUseFeatures.get(caracteristic); + return serializable; + } +} \ No newline at end of file Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/ParameterExportModel.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ParameterExportModel.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/ParameterExportModel.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/ParameterExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,94 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.CaracteristicMap; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.service.DecoratorService; +import fr.ifremer.tutti.service.TuttiCsvUtil; + +import java.io.Serializable; +import java.util.List; +import java.util.Map; + +/** + * Model of a parameter export. + * + * @author tchemit <chemit@codelutin.com> + * @since 1.3 + */ +public class ParameterExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<ParameterExportRow> { + + public ParameterExportModel(char separator, DecoratorService decoratorService) { + super(separator); + + newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); + newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); + newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); + newColumnForExport("Code_station", FishingOperation.PROPERTY_STATION_NUMBER); + newColumnForExport("Numero_Trait", FishingOperation.PROPERTY_FISHING_OPERATION_NUMBER, TuttiCsvUtil.INTEGER); + newColumnForExport("Poche", FishingOperation.PROPERTY_MULTIRIG_AGGREGATION); + + newColumnForExport("Code_PMFM", ParameterExportRow.PROPERTY_CARACTERISTIC, Caracteristic.PROPERTY_ID); + newColumnForExportByDecorator("Libelle_PMFm", ParameterExportRow.PROPERTY_CARACTERISTIC, decoratorService.getDecoratorByType(Caracteristic.class)); + newColumnForExport("Valeur", ParameterExportRow.PROPERTY_VALUE, TuttiCsvUtil.CARACTERISTIC_VALUE_FORMATTER); + } + + public void prepareRows(List<ParameterExportRow> rows, + Cruise cruise, + FishingOperation operation) { + + CaracteristicMap gearUseFeatures = operation.getGearUseFeatures(); + if (gearUseFeatures != null) { + for (Map.Entry<Caracteristic, Serializable> entry : gearUseFeatures.entrySet()) { + Caracteristic caracteristic = entry.getKey(); + + ParameterExportRow row = new ParameterExportRow(); + row.setCruise(cruise); + row.setFishingOperation(operation); + row.setCaracteristic(caracteristic); + row.setValue(entry.getValue()); + rows.add(row); + } + } + CaracteristicMap vesselUseFeatures = operation.getVesselUseFeatures(); + if (vesselUseFeatures != null) { + for (Map.Entry<Caracteristic, Serializable> entry : vesselUseFeatures.entrySet()) { + Caracteristic caracteristic = entry.getKey(); + + ParameterExportRow row = new ParameterExportRow(); + row.setCruise(cruise); + row.setFishingOperation(operation); + row.setCaracteristic(caracteristic); + row.setValue(entry.getValue()); + rows.add(row); + } + } + } + +} \ No newline at end of file Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/ParameterExportRow.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/ParameterExportRow.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/ParameterExportRow.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/ParameterExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,105 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; + +import java.io.Serializable; +import java.util.Date; + +/** + * A row in a parameter export. + * + * @author tchemit <chemit@codelutin.com> + * @since 1.3 + */ +public class ParameterExportRow implements Serializable { + + private static final long serialVersionUID = 1L; + + public static final String PROPERTY_CARACTERISTIC = "caracteristic"; + + public static final String PROPERTY_VALUE = "value"; + + + protected Cruise cruise; + + protected FishingOperation fishingOperation; + + protected Caracteristic caracteristic; + + private Serializable value; + + public void setCruise(Cruise cruise) { + this.cruise = cruise; + } + + public void setFishingOperation(FishingOperation fishingOperation) { + this.fishingOperation = fishingOperation; + } + + public void setCaracteristic(Caracteristic caracteristic) { + this.caracteristic = caracteristic; + } + + public void setValue(Serializable value) { + this.value = value; + } + + public Date getBeginDate() { + return cruise.getBeginDate(); + } + + public Program getProgram() { + return cruise.getProgram(); + } + + public String getSurveyPart() { + return cruise.getSurveyPart(); + } + + public String getStationNumber() { + return fishingOperation.getStationNumber(); + } + + public Integer getFishingOperationNumber() { + return fishingOperation.getFishingOperationNumber(); + } + + public String getMultirigAggregation() { + return fishingOperation.getMultirigAggregation(); + } + + public Caracteristic getCaracteristic() { + return caracteristic; + } + + public Serializable getValue() { + return value; + } +} \ No newline at end of file Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SpeciesExportModel.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SpeciesExportModel.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SpeciesExportModel.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SpeciesExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,77 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.BenthosBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.service.TuttiCsvUtil; + +import java.util.List; + +/** + * To export a species used in data to export. + * + * @author tchemit <chemit@codelutin.com> + * @since 2.3 + */ +public class SpeciesExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<SpeciesExportRow> { + + public SpeciesExportModel(char separator) { + super(separator); + newColumnForExport("Id", SpeciesExportRow.SPECIES + "." + Species.PROPERTY_REFERENCE_TAXON_ID, TuttiCsvUtil.PRIMITIVE_INTEGER); + newColumnForExport("Code_Rubin", SpeciesExportRow.SPECIES + "." + Species.PROPERTY_REF_TAX_CODE); + newColumnForExport("Nom Scientifique", SpeciesExportRow.SPECIES + "." + Species.PROPERTY_NAME); + newColumnForExport("Code campagne", SpeciesExportRow.SPECIES + "." + Species.PROPERTY_SURVEY_CODE); + } + + public void prepareBatchRows(TuttiExportService.ExportContext exportContext, + BatchContainer<SpeciesBatch> rootSpeciesBatch, + BatchContainer<BenthosBatch> rootBenthosBatch) { + + for (SpeciesBatch speciesBatch : rootSpeciesBatch.getChildren()) { + + exportContext.addSpecies(speciesBatch.getSpecies()); + } + for (BenthosBatch benthosBatch : rootBenthosBatch.getChildren()) { + exportContext.addSpecies(benthosBatch.getSpecies()); + } + } + + public void prepareIndividualRows(TuttiExportService.ExportContext exportContext, + List<IndividualObservationExportRow> rows) { + for (IndividualObservationExportRow row : rows) { + exportContext.addSpecies(row.getSpecies()); + } + } + + public void prepareAccidentalRows(TuttiExportService.ExportContext exportContext, + List<AccidentalCatchExportRow> rows) { + for (AccidentalCatchExportRow row : rows) { + exportContext.addSpecies(row.getSpecies()); + } + } +} \ No newline at end of file Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SpeciesExportRow.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SpeciesExportRow.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SpeciesExportRow.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SpeciesExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,52 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.referential.Species; + +import java.io.Serializable; + +/** + * A species in a export. + * + * @author tchemit <chemit@codelutin.com> + * @since 2.3 + */ +public class SpeciesExportRow implements Serializable { + + private static final long serialVersionUID = 1L; + + public static final String SPECIES = "species"; + + protected Species species; + + public Species getSpecies() { + return species; + } + + public void setSpecies(Species species) { + this.species = species; + } +} Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SurveyExportModel.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SurveyExportModel.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SurveyExportModel.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SurveyExportModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,72 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; +import fr.ifremer.tutti.service.TuttiCsvUtil; + +import java.util.List; + +/** + * Model of a survey export. + * + * @author tchemit <chemit@codelutin.com> + * @since 1.3 + */ +public class SurveyExportModel extends TuttiCsvUtil.AbstractTuttiExportModel<SurveyExportRow> { + + public SurveyExportModel(char separator) { + super(separator); + + newColumnForExport("Annee", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.YEAR); + newColumnForExport("Serie", Cruise.PROPERTY_PROGRAM, Program.PROPERTY_NAME); + newColumnForExport("Serie_Partielle", Cruise.PROPERTY_SURVEY_PART); + newColumnForExport("Navire", Cruise.PROPERTY_VESSEL, TuttiCsvUtil.VESSEL_VALUE_FORMATTER); + newColumnForExport("Pays", SurveyExportRow.PROPERTY_COUNTRY); + newColumnForExport("Zone_Etude", Program.PROPERTY_ZONE, TuttiLocation.PROPERTY_NAME); + newColumnForExport("Campagne", Cruise.PROPERTY_NAME); + newColumnForExport("Id_Sismer", SurveyExportRow.PROPERTY_ID_SISMER); +// newColumnForExport("Nombre_de_poche", Cruise.PROPERTY_MULTIRIG_NUMBER, TuttiCsvUtil.PRIMITIVE_INTEGER); + newColumnForExport("Date_Deb_Campagne", Cruise.PROPERTY_BEGIN_DATE, TuttiCsvUtil.DAY_TIME_SECOND); + newColumnForExport("Port_Deb_Campagne", Cruise.PROPERTY_DEPARTURE_LOCATION, TuttiLocation.PROPERTY_NAME); + newColumnForExport("Date_Fin_Campagne", Cruise.PROPERTY_END_DATE, TuttiCsvUtil.DAY_TIME_SECOND); + newColumnForExport("Port_Fin_Campagne", Cruise.PROPERTY_RETURN_LOCATION, TuttiLocation.PROPERTY_NAME); +// newColumnForExport("Engin", Cruise.PROPERTY_GEAR, TuttiCsvUtil.LIST_GEAR_FORMATTER); + newColumnForExport("Chef_Mission", Cruise.PROPERTY_HEAD_OF_MISSION, TuttiCsvUtil.LIST_PERSON_FORMATTER); + newColumnForExport("Resp_Salle_Tri", Cruise.PROPERTY_HEAD_OF_SORT_ROOM, TuttiCsvUtil.LIST_PERSON_FORMATTER); + newColumnForExport("Commentaire", Cruise.PROPERTY_COMMENT); + } + + public void prepareRows(List<SurveyExportRow> rows, + Cruise cruise, + TuttiLocation country) { + SurveyExportRow row = new SurveyExportRow(); + row.setCruise(cruise); + row.setCountry(country); + rows.add(row); + } +} \ No newline at end of file Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SurveyExportRow.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/SurveyExportRow.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SurveyExportRow.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/SurveyExportRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,128 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.referential.GearWithOriginalRankOrder; +import fr.ifremer.tutti.persistence.entities.referential.Person; +import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; +import fr.ifremer.tutti.persistence.entities.referential.Vessel; + +import java.io.Serializable; +import java.util.Date; +import java.util.List; + +/** + * A row in a survey export. + * + * @author tchemit <chemit@codelutin.com> + * @since 1.3 + */ +public class SurveyExportRow implements Serializable { + + private static final long serialVersionUID = 1L; + + public static final String PROPERTY_COUNTRY = "country"; + + public static final String PROPERTY_ID_SISMER = "idSismer"; + + protected Cruise cruise; + + protected TuttiLocation country; + + public void setCruise(Cruise cruise) { + this.cruise = cruise; + } + + public void setCountry(TuttiLocation country) { + this.country = country; + } + + public Date getBeginDate() { + return cruise.getBeginDate(); + } + + public Program getProgram() { + return cruise.getProgram(); + } + + public String getSurveyPart() { + return cruise.getSurveyPart(); + } + + public TuttiLocation getZone() { + return cruise.getProgram().getZone(); + } + + public Vessel getVessel() { + return cruise.getVessel(); + } + + public String getCountry() { + return country.getLabel(); + } + + public String getName() { + return cruise.getName(); + } + + public List<GearWithOriginalRankOrder> getGear() { + return cruise.getGear(); + } + + public TuttiLocation getDepartureLocation() { + return cruise.getDepartureLocation(); + } + + public Date getEndDate() { + return cruise.getEndDate(); + } + + public TuttiLocation getReturnLocation() { + return cruise.getReturnLocation(); + } + + public String getComment() { + return cruise.getComment(); + } + + public List<Person> getHeadOfMission() { + return cruise.getHeadOfMission(); + } + + public List<Person> getHeadOfSortRoom() { + return cruise.getHeadOfSortRoom(); + } + + public Integer getMultirigNumber() { + return cruise.getMultirigNumber(); + } + + // see http://forge.codelutin.com/issues/2877 + public String getIdSismer() { + return ""; + } +} Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/TuttiExportService.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/TuttiExportService.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/TuttiExportService.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/TuttiExportService.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,953 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.base.Charsets; +import com.google.common.base.Preconditions; +import com.google.common.collect.Lists; +import com.google.common.collect.Maps; +import com.google.common.io.Files; +import fr.ifremer.tutti.TuttiBusinessException; +import fr.ifremer.tutti.TuttiIOUtil; +import fr.ifremer.tutti.TuttiTechnicalException; +import fr.ifremer.tutti.persistence.ProgressionModel; +import fr.ifremer.tutti.persistence.entities.CaracteristicMap; +import fr.ifremer.tutti.persistence.entities.TuttiEntities; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.BenthosBatch; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.MarineLitterBatch; +import fr.ifremer.tutti.persistence.entities.data.Program; +import fr.ifremer.tutti.persistence.entities.data.SampleCategoryModel; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.Gear; +import fr.ifremer.tutti.persistence.entities.referential.Gears; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; +import fr.ifremer.tutti.persistence.entities.referential.Vessel; +import fr.ifremer.tutti.service.AbstractTuttiService; +import fr.ifremer.tutti.service.DecoratorService; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.TuttiCsvUtil; +import fr.ifremer.tutti.service.TuttiServiceContext; +import fr.ifremer.tutti.service.catches.WeightComputingService; +import org.apache.commons.collections.MapUtils; +import org.apache.commons.io.IOUtils; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.nuiton.decorator.Decorator; + +import java.io.BufferedWriter; +import java.io.Closeable; +import java.io.File; +import java.io.FileNotFoundException; +import java.io.IOException; +import java.util.Collections; +import java.util.Comparator; +import java.util.List; +import java.util.Map; + +import static org.nuiton.i18n.I18n._; + +/** + * To export data in the generic format. + * <p/> + * See http://forge.codelutin.com/issues/1875. + * + * @author tchemit <chemit@codelutin.com> + * @since 1.3 + */ +public class TuttiExportService extends AbstractTuttiService { + + private static final Log log = + LogFactory.getLog(TuttiExportService.class); + + protected PersistenceService persistenceService; + + protected DecoratorService decoratorService; + + protected WeightComputingService weightComputingService; + + protected char csvSeparator; + + protected Caracteristic verticalOpeningCaracteristic; + + protected Caracteristic horizontalOpeningWingCaracteristic; + + protected Caracteristic horizontalOpeningDoorCaracteristic; + + protected TuttiLocation country; + + protected SampleCategoryModel sampleCategoryModel; + + protected Caracteristic deadOrAliveCaracteristic; + + protected Caracteristic genderCaracteristic; + + protected Caracteristic weightMeasuredCaracteristic; + + protected Caracteristic pmfmIdCaracteristic; + + @Override + public void setServiceContext(TuttiServiceContext context) { + super.setServiceContext(context); + persistenceService = getService(PersistenceService.class); + decoratorService = getService(DecoratorService.class); + weightComputingService = getService(WeightComputingService.class); + + sampleCategoryModel = context.getSampleCategoryModel(); + + csvSeparator = context.getConfig().getCsvSeparator(); + verticalOpeningCaracteristic = persistenceService.getVerticalOpeningCaracteristic(); + horizontalOpeningWingCaracteristic = persistenceService.getHorizontalOpeningWingCaracteristic(); + horizontalOpeningDoorCaracteristic = persistenceService.getHorizontalOpeningDoorCaracteristic(); + weightMeasuredCaracteristic = persistenceService.getWeightMeasuredCaracteristic(); + pmfmIdCaracteristic = persistenceService.getPmfmIdCaracteristic(); + deadOrAliveCaracteristic = persistenceService.getDeadOrAliveCaracteristic(); + genderCaracteristic = persistenceService.getSexCaracteristic(); + + List<TuttiLocation> allCountry = persistenceService.getAllCountry(); + String countryId = context.getConfig().getExportCountryId(); + country = TuttiEntities.splitById(allCountry).get(countryId); + } + + public void exportProgram(String programId, + File exportFile, + ProgressionModel progressionModel) { + Preconditions.checkNotNull(programId); + Preconditions.checkNotNull(exportFile); + + Program program = persistenceService.getProgram(programId); + Preconditions.checkNotNull(program); + + if (log.isDebugEnabled()) { + log.debug("Will export program: " + programId); + } + List<Cruise> allCruise = persistenceService.getAllCruise(programId); + + File basedir = new File(context.getConfig().newTempFile( + "exportProgram"), "exportProgram-" + programId); + + TuttiIOUtil.forceMkdir(basedir, _("tutti.service.mkDir.error", basedir)); + + ExportContext exportContext = createExportContext(basedir); + + try { + for (Cruise cruise : allCruise) { + // load full cruise + cruise = persistenceService.getCruise(cruise.getId()); + exportCruise(cruise, exportContext, progressionModel); + } + TuttiIOUtil.close(exportContext, _("tutti.service.export.closeContext.error")); + + progressionModel.setMessage( + _("tutti.service.exportCruise.buildZip", exportFile)); + + TuttiIOUtil.zip(basedir, exportFile, _("tutti.service.export.zip.error", exportFile)); + progressionModel.increments(1); + } finally { + IOUtils.closeQuietly(exportContext); + } + } + + public void exportCruise(String cruiseId, + File exportFile, + ProgressionModel progressionModel) { + + Preconditions.checkNotNull(cruiseId); + Preconditions.checkNotNull(exportFile); + + Cruise cruise = persistenceService.getCruise(cruiseId); + Preconditions.checkNotNull(cruise); + + if (log.isDebugEnabled()) { + log.debug("Will export cruise: " + cruiseId); + } + + // check cruise fishing operations + TuttiBusinessException checkError = null; + try { + checkCruise(progressionModel, cruise); + } catch (TuttiBusinessException e) { + // error while checking cruise + if (log.isDebugEnabled()) { + log.debug("Got a check cruise error", e); + } + checkError = e; + } + + File basedir = new File(context.getConfig().newTempFile( + "exportCruise"), "exportCruise-" + cruiseId); + + TuttiIOUtil.forceMkdir(basedir, _("tutti.service.mkDir.error", basedir)); + + ExportContext exportContext = createExportContext(basedir); + + try { + exportCruise(cruise, exportContext, progressionModel); + TuttiIOUtil.close(exportContext, _("tutti.service.export.closeContext.error")); + + progressionModel.setMessage( + _("tutti.service.exportCruise.buildZip", exportFile)); + + TuttiIOUtil.zip(basedir, exportFile, _("tutti.service.export.zip.error", exportFile)); + progressionModel.increments(1); + } finally { + IOUtils.closeQuietly(exportContext); + } + + if (checkError != null) { + // rethrow error + throw checkError; + } + } + + protected ExportContext createExportContext(File basedir) { + + + List<Species> allReferentSpecies = persistenceService.getAllReferentSpecies(); + Map<String, Species> speciesById = TuttiEntities.splitById(allReferentSpecies); + + return new ExportContext( + basedir, + csvSeparator, + decoratorService, + verticalOpeningCaracteristic, + horizontalOpeningWingCaracteristic, + horizontalOpeningDoorCaracteristic, + weightMeasuredCaracteristic, + deadOrAliveCaracteristic, + genderCaracteristic, + pmfmIdCaracteristic, + sampleCategoryModel, + speciesById); + } + + protected void checkCruise(ProgressionModel progressionModel, Cruise cruise) { + Preconditions.checkNotNull(cruise); + + + progressionModel.setMessage( + _("tutti.service.exportCruise.checkCruise", cruise.getName())); + + // check cruise fishing operations + Map<String, String> errors = + weightComputingService.checkCruise(cruise.getId()); + + progressionModel.increments(1); + + if (MapUtils.isNotEmpty(errors)) { + + // there is some fishing operations with some errors + + Decorator<Cruise> cruiseDecorator = + decoratorService.getDecoratorByType(Cruise.class); + + Decorator<FishingOperation> fishingOperationDecorator = + decoratorService.getDecoratorByType(FishingOperation.class); + StringBuilder sb = new StringBuilder(); + for (Map.Entry<String, String> entry : errors.entrySet()) { + String fishingOperationId = entry.getKey(); + FishingOperation fishingOperation = persistenceService.getFishingOperation(fishingOperationId); + String fishingOperationStr = fishingOperationDecorator.toString(fishingOperation); + sb.append(_("tutti.service.export.invalid.fishingOperation", fishingOperationStr, entry.getValue())); + } + String cruiseStr = cruiseDecorator.toString(cruise); + throw new TuttiBusinessException( + _("tutti.service.export.invalid.cruise", cruiseStr, sb.toString())); + } + } + + protected void exportCruise(Cruise cruise, + ExportContext exportContext, + ProgressionModel progressionModel) { + + List<FishingOperation> operations = + persistenceService.getAllFishingOperation(cruise.getId()); + + // load fully operations + List<FishingOperation> loadedOperations = + Lists.newArrayListWithCapacity(operations.size()); + for (FishingOperation operation : operations) { + FishingOperation loadedOeration = + persistenceService.getFishingOperation(operation.getId()); + loadedOperations.add(loadedOeration); + } + + String cruiseName = cruise.getName(); + progressionModel.setMessage( + _("tutti.service.exportCruise.exportSurvey", cruiseName)); + exportSurvey(exportContext, cruise); + progressionModel.increments(1); + + progressionModel.setMessage( + _("tutti.service.exportCruise.exportGearCaracteristics", cruiseName)); + exportGearCaracteristics(exportContext, cruise); + progressionModel.increments(1); + + progressionModel.setMessage( + _("tutti.service.exportCruise.exportOperations", cruiseName)); + exportOperations(exportContext, cruise, loadedOperations); + progressionModel.increments(1); + + progressionModel.setMessage( + _("tutti.service.exportCruise.exportParameters", cruiseName)); + exportParameters(exportContext, cruise, loadedOperations); + progressionModel.increments(1); + + progressionModel.setMessage( + _("tutti.service.exportCruise.exportMarineLitters", cruiseName)); + exportMarineLitters(exportContext, cruise, loadedOperations); + progressionModel.increments(1); + + progressionModel.setMessage( + _("tutti.service.exportCruise.exportIndividualObservations", cruiseName)); + exportIndividualObservations(exportContext, cruise, loadedOperations); + progressionModel.increments(1); + + progressionModel.setMessage( + _("tutti.service.exportCruise.exportAccidentalCatches", cruiseName)); + exportAccidentalCatch(exportContext, cruise, loadedOperations); + progressionModel.increments(1); + + progressionModel.setMessage( + _("tutti.service.exportCruise.exportCatches", cruiseName)); + exportCatches(exportContext, cruise, loadedOperations); + progressionModel.increments(1); + + progressionModel.setMessage( + _("tutti.service.exportCruise.exportSpecies", cruiseName)); + + exportSpecies(exportContext, exportContext.getSpeciesToExport()); + progressionModel.increments(1); + } + + protected void exportSurvey(ExportContext exportContext, + Cruise cruise) { + try { + + List<SurveyExportRow> rows = Lists.newArrayList(); + exportContext.surveyModel.prepareRows(rows, cruise, country); + exportContext.surveyExport.write(rows, exportContext.surveyWriter); + } catch (Exception e) { + throw new TuttiTechnicalException(_("tutti.service.export.survey.error"), e); + } + } + + protected void exportGearCaracteristics(ExportContext exportContext, + Cruise cruise) { + try { + + List<GearCaracteristicExportRow> rows = Lists.newArrayList(); + + for (Gear gear : cruise.getGear()) { + + CaracteristicMap caracteristics = + persistenceService.getGearCaracteristics( + cruise.getId(), + gear.getId(), + gear.getRankOrder()); + + Gear gearWithCaracteristics = Gears.newGear(gear); + gearWithCaracteristics.setCaracteristics(caracteristics); + exportContext.gearCaracteristicsModel.prepareRows(rows, cruise, gearWithCaracteristics); + } + + exportContext.gearCaracteristicsExport.write(rows, exportContext.gearCaracteristicsWriter); + } catch (Exception e) { + throw new TuttiTechnicalException(_("tutti.service.export.survey.error"), e); + } + } + + protected void exportOperations(ExportContext exportContext, + Cruise cruise, + List<FishingOperation> operations) { + + try { + + List<OperationExportRow> rows = Lists.newArrayList(); + + for (FishingOperation operation : operations) { + + OperationContext operationContext = getOperationContext(operation); + CatchBatch catchBatch = operationContext.getCatchBatch(); + exportContext.operationModel.prepareRows(rows, + cruise, + operation, + catchBatch); + } + + exportContext.operationExport.write(rows, exportContext.operationWriter); + } catch (Exception e) { + throw new TuttiTechnicalException(_("tutti.service.export.operations.error"), e); + } + } + + protected void exportParameters(ExportContext exportContext, + Cruise cruise, + List<FishingOperation> operations) { + + try { + + for (FishingOperation operation : operations) { + List<ParameterExportRow> rows = Lists.newArrayList(); + exportContext.parameterModel.prepareRows(rows, cruise, operation); + exportContext.parameterExport.write(rows, exportContext.parameterWriter); + } + + } catch (Exception e) { + throw new TuttiTechnicalException(_("tutti.service.export.parameters.error"), e); + } + } + + protected void exportMarineLitters(ExportContext exportContext, + Cruise cruise, + List<FishingOperation> operations) { + + try { + + for (FishingOperation operation : operations) { + OperationContext operationContext = getOperationContext(operation); + + boolean withCatchBatch = operationContext.isWithCatchBatch(); + if (!withCatchBatch) { + continue; + } + List<MarineLitterExportRow> rows = Lists.newArrayList(); + exportContext.marineLitterModel.prepareRows(persistenceService, rows, cruise, operation); + exportContext.marineLitterExport.write(rows, exportContext.marineLitterWriter); + } + + } catch (Exception e) { + throw new TuttiTechnicalException(_("tutti.service.export.parameters.error"), e); + } + } + + protected void exportIndividualObservations(ExportContext exportContext, + Cruise cruise, + List<FishingOperation> operations) { + + try { + + for (FishingOperation operation : operations) { + OperationContext operationContext = getOperationContext(operation); + + boolean withCatchBatch = operationContext.isWithCatchBatch(); + if (!withCatchBatch) { + continue; + } + List<IndividualObservationExportRow> rows = Lists.newArrayList(); + exportContext.individualObservationModel.prepareRows(persistenceService, rows, cruise, operation); + exportContext.speciesModel.prepareIndividualRows( + exportContext, + rows); + exportContext.individualObservationExport.write(rows, exportContext.individualObservationWriter); + } + + } catch (Exception e) { + throw new TuttiTechnicalException(_("tutti.service.export.parameters.error"), e); + } + } + + protected void exportAccidentalCatch(ExportContext exportContext, + Cruise cruise, + List<FishingOperation> operations) { + try { + + for (FishingOperation operation : operations) { + List<AccidentalCatchExportRow> rows = Lists.newArrayList(); + exportContext.accidentalCatchModel.prepareRows(persistenceService, rows, cruise, operation); + exportContext.speciesModel.prepareAccidentalRows( + exportContext, + rows); + exportContext.accidentalCatchExport.write(rows, exportContext.accidentalCatchWriter); + } + + } catch (Exception e) { + throw new TuttiTechnicalException(_("tutti.service.export.parameters.error"), e); + } + } + + protected void exportCatches(ExportContext exportContext, + Cruise cruise, + List<FishingOperation> operations) { + try { + + for (FishingOperation operation : operations) { + + OperationContext operationContext = getOperationContext(operation); + + boolean withCatchBatch = operationContext.isWithCatchBatch(); + if (!withCatchBatch) { + continue; + } + + CatchBatch catchBatch = operationContext.getCatchBatch(); + + BatchContainer<SpeciesBatch> rootSpeciesBatch = + operationContext.getRootSpeciesBatch(); + + BatchContainer<BenthosBatch> rootBenthosBatch = + operationContext.getRootBenthosBatch(); + + exportContext.speciesModel.prepareBatchRows( + exportContext, + rootSpeciesBatch, + rootBenthosBatch); + + Float totalWeight = TuttiEntities.getValueOrComputedValue( + catchBatch.getCatchTotalWeight(), + catchBatch.getCatchTotalComputedWeight()); + + Float totalUnsortedWeight = + catchBatch.getCatchTotalUnsortedComputedWeight(); + + + Float totalSortedSpeciesWeight = TuttiEntities.getValueOrComputedValue( + catchBatch.getSpeciesTotalSortedWeight(), + catchBatch.getSpeciesTotalSortedComputedWeight()); + + Float totalSampleSortedSpeciesWeight = + catchBatch.getSpeciesTotalSampleSortedComputedWeight(); + + Float totalSortedBenthosWeight = TuttiEntities.getValueOrComputedValue( + catchBatch.getBenthosTotalSortedWeight(), + catchBatch.getBenthosTotalSortedComputedWeight()); + + Float totalSampleSortedBenthosWeight = + catchBatch.getBenthosTotalSampleSortedComputedWeight(); + + Float totalSortedWeight = catchBatch.getCatchTotalSortedComputedWeight(); + + //FIXME tchemit 2013-07-12 J'utilise en fait la formule (Poids de la capture totale - poids du HV dans la capture totale) / (poids total capture triée) + // (Poids de la capture totale - poids du HV dans la capture totale) / (poids total capture triée - poids du HV dans la capture totale) + + Float catchRaisingFactor = totalWeight == null || totalUnsortedWeight == null || totalSortedWeight == null ? 1 : (totalWeight - totalUnsortedWeight) / totalSortedWeight; + + Float speciesCatchRaisingFactor = totalSampleSortedSpeciesWeight == null || totalSortedSpeciesWeight == null || totalSampleSortedSpeciesWeight == null ? 1 : (totalSampleSortedSpeciesWeight == 0 ? 0 : (totalSortedSpeciesWeight / totalSampleSortedSpeciesWeight) * catchRaisingFactor); + Float benthosCatchRaisingFactor = totalSampleSortedBenthosWeight == null || totalSortedBenthosWeight == null || totalSampleSortedBenthosWeight == null ? 1 : (totalSampleSortedBenthosWeight == 0 ? 0 : (totalSortedBenthosWeight / totalSampleSortedBenthosWeight) * catchRaisingFactor); + + if (log.isDebugEnabled()) { + String message = "\ncatchTotalWeight : " + totalWeight + + "\ncatchTotalUnsortedWeight : " + totalUnsortedWeight + + "\ntotalSampleSortedSpeciesWeight : " + totalSampleSortedSpeciesWeight + + "\ntotalSampleSortedBenthosWeight : " + totalSampleSortedBenthosWeight + + "\ntotalSortedWeight : " + totalSortedWeight + + "\ncatchRaisingFactor : " + catchRaisingFactor + + "\nspeciesCatchRaisingFactor : " + speciesCatchRaisingFactor + + "\nbenthosCatchRaisingFactor : " + benthosCatchRaisingFactor; + + log.debug(message); + } + + List<CatchExportRow> rows = Lists.newArrayList(); + exportContext.catchModel.prepareRows(persistenceService, + rows, + cruise, + operation, + rootSpeciesBatch, + rootBenthosBatch, + speciesCatchRaisingFactor, + benthosCatchRaisingFactor); + + exportContext.catchExport.write(rows, exportContext.catchWriter); + } + + } catch (Exception e) { + throw new TuttiTechnicalException( + _("tutti.service.export.catches.error"), e); + } + } + + protected void exportSpecies(ExportContext exportContext, + List<SpeciesExportRow> rows) { + + try { + + exportContext.speciesExport.write(rows, exportContext.speciesWriter); + + } catch (Exception e) { + throw new TuttiTechnicalException( + _("tutti.service.export.catches.error"), e); + } + } + + protected static class ExportContext implements Closeable { + + File surveyFile; + + File gearCaracteristicsFile; + + File operationFile; + + File parameterFile; + + File marineLitterFile; + + File individualObservationFile; + + File catchFile; + + File accidentalCatchFile; + + File speciesFile; + + BufferedWriter surveyWriter; + + BufferedWriter gearCaracteristicsWriter; + + BufferedWriter operationWriter; + + BufferedWriter parameterWriter; + + BufferedWriter marineLitterWriter; + + BufferedWriter catchWriter; + + BufferedWriter accidentalCatchWriter; + + BufferedWriter individualObservationWriter; + + BufferedWriter speciesWriter; + + SurveyExportModel surveyModel; + + GearCaracteristicExportModel gearCaracteristicsModel; + + OperationExportModel operationModel; + + MarineLitterExportModel marineLitterModel; + + ParameterExportModel parameterModel; + + CatchExportModel catchModel; + + AccidentalCatchExportModel accidentalCatchModel; + + IndividualObservationExportModel individualObservationModel; + + SpeciesExportModel speciesModel; + + final Map<String, SpeciesExportRow> speciesToExport = Maps.newTreeMap(); + + TuttiCsvUtil.TuttiRepeatableExport<SurveyExportRow> surveyExport; + + TuttiCsvUtil.TuttiRepeatableExport<GearCaracteristicExportRow> gearCaracteristicsExport; + + TuttiCsvUtil.TuttiRepeatableExport<OperationExportRow> operationExport; + + TuttiCsvUtil.TuttiRepeatableExport<MarineLitterExportRow> marineLitterExport; + + TuttiCsvUtil.TuttiRepeatableExport<ParameterExportRow> parameterExport; + + TuttiCsvUtil.TuttiRepeatableExport<CatchExportRow> catchExport; + + TuttiCsvUtil.TuttiRepeatableExport<AccidentalCatchExportRow> accidentalCatchExport; + + TuttiCsvUtil.TuttiRepeatableExport<IndividualObservationExportRow> individualObservationExport; + + TuttiCsvUtil.TuttiRepeatableExport<SpeciesExportRow> speciesExport; + + Map<String, Species> speciesById; + + String checkError; + + ExportContext(File basedir, + char csvSeparator, + DecoratorService decoratorService, + Caracteristic verticalOpeningCaracteristic, + Caracteristic horizontalOpeningWingCaracteristic, + Caracteristic horizontalOpeningDoorCaracteristic, + Caracteristic weightMeasuredCaracteristic, + Caracteristic deadOrAliveCaracteristic, + Caracteristic genderCaracteristic, + Caracteristic pmfmIdCaracteristic, + SampleCategoryModel sampleCategoryModel, + Map<String, Species> speciesById) { + + this.speciesById = speciesById; + try { + + surveyFile = new File(basedir, "survey.csv"); + surveyWriter = Files.newWriter(surveyFile, Charsets.UTF_8); + + gearCaracteristicsFile = new File(basedir, "gearCaracteristics.csv"); + gearCaracteristicsWriter = Files.newWriter(gearCaracteristicsFile, Charsets.UTF_8); + + operationFile = new File(basedir, "operation.csv"); + operationWriter = Files.newWriter(operationFile, Charsets.UTF_8); + + marineLitterFile = new File(basedir, "marineLitter.csv"); + marineLitterWriter = Files.newWriter(marineLitterFile, Charsets.UTF_8); + + parameterFile = new File(basedir, "parameter.csv"); + parameterWriter = Files.newWriter(parameterFile, Charsets.UTF_8); + + catchFile = new File(basedir, "catch.csv"); + catchWriter = Files.newWriter(catchFile, Charsets.UTF_8); + + accidentalCatchFile = new File(basedir, "accidentalCatch.csv"); + accidentalCatchWriter = Files.newWriter(accidentalCatchFile, Charsets.UTF_8); + + individualObservationFile = new File(basedir, "individualObservation.csv"); + individualObservationWriter = Files.newWriter(individualObservationFile, Charsets.UTF_8); + + speciesFile = new File(basedir, "species.csv"); + speciesWriter = Files.newWriter(speciesFile, Charsets.UTF_8); + + } catch (FileNotFoundException e) { + + // should never happen + throw new TuttiTechnicalException(_("tutti.service.export.context.error"), e); + } + + surveyModel = new SurveyExportModel(csvSeparator); + + gearCaracteristicsModel = new GearCaracteristicExportModel( + csvSeparator, decoratorService); + + operationModel = + new OperationExportModel( + csvSeparator, + verticalOpeningCaracteristic, + horizontalOpeningWingCaracteristic, + horizontalOpeningDoorCaracteristic, + decoratorService.getDecoratorByType(Vessel.class)); + + parameterModel = new ParameterExportModel( + csvSeparator, decoratorService); + + marineLitterModel = new MarineLitterExportModel(csvSeparator); + catchModel = new CatchExportModel(csvSeparator, + sampleCategoryModel, + decoratorService); + accidentalCatchModel = new AccidentalCatchExportModel( + csvSeparator, + deadOrAliveCaracteristic, + genderCaracteristic, + weightMeasuredCaracteristic, + pmfmIdCaracteristic); + individualObservationModel = new IndividualObservationExportModel( + csvSeparator, + weightMeasuredCaracteristic, + pmfmIdCaracteristic); + + speciesModel = new SpeciesExportModel( + csvSeparator); + + surveyExport = TuttiCsvUtil.newRepeatableExport(surveyModel); + + gearCaracteristicsExport = TuttiCsvUtil.newRepeatableExport( + gearCaracteristicsModel); + + operationExport = TuttiCsvUtil.newRepeatableExport( + operationModel); + + parameterExport = TuttiCsvUtil.newRepeatableExport( + parameterModel); + + marineLitterExport = TuttiCsvUtil.newRepeatableExport( + marineLitterModel); + + catchExport = TuttiCsvUtil.newRepeatableExport(catchModel); + accidentalCatchExport = TuttiCsvUtil.newRepeatableExport(accidentalCatchModel); + individualObservationExport = TuttiCsvUtil.newRepeatableExport(individualObservationModel); + speciesExport = TuttiCsvUtil.newRepeatableExport(speciesModel); + } + + @Override + public void close() throws IOException { + IOUtils.closeQuietly(surveyWriter); + IOUtils.closeQuietly(gearCaracteristicsWriter); + IOUtils.closeQuietly(operationWriter); + IOUtils.closeQuietly(parameterWriter); + IOUtils.closeQuietly(catchWriter); + IOUtils.closeQuietly(accidentalCatchWriter); + IOUtils.closeQuietly(marineLitterWriter); + IOUtils.closeQuietly(individualObservationWriter); + IOUtils.closeQuietly(speciesWriter); + } + + public String getCheckError() { + return checkError; + } + + public void setCheckError(String checkError) { + this.checkError = checkError; + } + + public void addSpecies(Species species) { + String speciesId = species.getId(); + if (!speciesToExport.containsKey(speciesId)) { + + // not treated species, add a new row + Species fullSpecies = speciesById.get(speciesId); + SpeciesExportRow row = new SpeciesExportRow(); + row.setSpecies(fullSpecies); + speciesToExport.put(speciesId, row); + } + } + + public List<SpeciesExportRow> getSpeciesToExport() { + List<SpeciesExportRow> result = + Lists.newArrayList(speciesToExport.values()); + + Collections.sort(result, new Comparator<SpeciesExportRow>() { + @Override + public int compare(SpeciesExportRow o1, SpeciesExportRow o2) { + return o1.getSpecies().getReferenceTaxonId().compareTo(o2.getSpecies().getReferenceTaxonId()); + } + }); + return result; + } + } + + protected static class OperationContext { + + protected final FishingOperation operation; + + private final CatchBatch catchBatch; + + private BatchContainer<MarineLitterBatch> rootMarineLitterBatch; + + private BatchContainer<SpeciesBatch> rootSpeciesBatch; + + private BatchContainer<BenthosBatch> rootBenthosBatch; + + + protected boolean withCatchBatch; + + public OperationContext(FishingOperation operation, + PersistenceService persistenceService, + WeightComputingService weightComputingService) { + this.operation = operation; + + String operationId = operation.getId(); + + withCatchBatch = + persistenceService.isFishingOperationWithCatchBatch( + operationId); + + if (withCatchBatch) { + + + // load batches + + catchBatch = + persistenceService.getCatchBatchFromFishingOperation( + operationId); + + boolean withError = false; + + try { + rootSpeciesBatch = weightComputingService.getComputedSpeciesBatches(operationId); + } catch (Exception e) { + withError = true; + rootSpeciesBatch = + persistenceService.getRootSpeciesBatch(operationId, null); + } + + try { + rootBenthosBatch = + weightComputingService.getComputedBenthosBatches(operationId); + } catch (Exception e) { + withError = true; + rootBenthosBatch = + persistenceService.getRootBenthosBatch(operationId, null); + } + + try { + rootMarineLitterBatch = + weightComputingService.getComputedMarineLitterBatches(operationId, catchBatch.getMarineLitterTotalWeight()); + } catch (Exception e) { + withError = true; + rootMarineLitterBatch = + persistenceService.getRootMarineLitterBatch(operationId); + } + + // apply compute weights + + if (!withError) { + weightComputingService.computeCatchBatchWeights( + catchBatch, + rootSpeciesBatch, + rootBenthosBatch, + rootMarineLitterBatch); + } + } else { + if (log.isWarnEnabled()) { + log.warn("Skip fishing operation " + operationId + + " since no catchBatch associated."); + } + catchBatch = null; + rootSpeciesBatch = null; + rootBenthosBatch = null; + rootMarineLitterBatch = null; + } + + } + + public CatchBatch getCatchBatch() { + return catchBatch; + } + + public BatchContainer<MarineLitterBatch> getRootMarineLitterBatch() { + return rootMarineLitterBatch; + } + + public BatchContainer<SpeciesBatch> getRootSpeciesBatch() { + return rootSpeciesBatch; + } + + public BatchContainer<BenthosBatch> getRootBenthosBatch() { + return rootBenthosBatch; + } + + public boolean isWithCatchBatch() { + return withCatchBatch; + } + } + + protected Map<String, OperationContext> operationContexts = Maps.newTreeMap(); + + protected OperationContext getOperationContext(FishingOperation operation) { + String operationId = operation.getId(); + + OperationContext result = operationContexts.get(operationId); + if (result == null) { + + // create it + result = new OperationContext(operation, + persistenceService, + weightComputingService); + operationContexts.put(operationId, result); + } + return result; + + } +} Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/CatchesPdfExportService.java (from rev 1366, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/catches/ExportCatchesReportService.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/CatchesPdfExportService.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/CatchesPdfExportService.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,296 @@ +package fr.ifremer.tutti.service.export.pdf; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.collect.Lists; +import com.google.common.collect.Maps; +import fr.ifremer.tutti.TuttiBusinessException; +import fr.ifremer.tutti.TuttiTechnicalException; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.SpeciesAbleBatch; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.service.AbstractTuttiService; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.TuttiServiceContext; +import fr.ifremer.tutti.service.catches.WeightComputingService; +import fr.ifremer.tutti.service.export.ExportBatchEntry; +import freemarker.cache.ClassTemplateLoader; +import freemarker.ext.beans.BeansWrapper; +import freemarker.template.Configuration; +import freemarker.template.Template; +import org.apache.commons.io.IOUtils; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.xhtmlrenderer.pdf.ITextRenderer; + +import java.io.File; +import java.io.FileOutputStream; +import java.io.OutputStream; +import java.io.StringWriter; +import java.io.Writer; +import java.util.List; +import java.util.Locale; +import java.util.Map; + +import static org.nuiton.i18n.I18n._; + +/** + * @author kmorin <kmorin@codelutin.com> + * @since 2.0 + */ +public class CatchesPdfExportService extends AbstractTuttiService { + + /** Logger. */ + private static final Log log = + LogFactory.getLog(CatchesPdfExportService.class); + + protected Configuration freemarkerConfiguration; + + protected PersistenceService persistenceService; + + protected WeightComputingService weightComputingService; + + public CatchesPdfExportService() { + super(); + + freemarkerConfiguration = new Configuration(); + + // needed to overwrite "Defaults to default system encoding." + // fix encoding issue on some systems + freemarkerConfiguration.setEncoding(Locale.getDefault(), "UTF-8"); + + // specific template loader to get template from jars (classpath) + ClassTemplateLoader templateLoader = new ClassTemplateLoader(CatchesPdfExportService.class, "/ftl"); + freemarkerConfiguration.setTemplateLoader(templateLoader); + + // pour les maps dans les template (entre autre) + freemarkerConfiguration.setObjectWrapper(new BeansWrapper()); + } + + @Override + public void setServiceContext(TuttiServiceContext context) { + super.setServiceContext(context); + persistenceService = getService(PersistenceService.class); + weightComputingService = getService(WeightComputingService.class); + } + + /** + * Generate the PDF report for the fiven cruise. + * + * @param targetFile pdf file to generate + * @param locale generated pdf locale + * @throws TuttiBusinessException + */ + public void generateCruisePDFFile(File targetFile, + String cruiseId, + Locale locale) throws TuttiBusinessException { + + + List<String> allFishingOperation = + persistenceService.getAllFishingOperationIds(cruiseId); + + List<Map<String, Object>> operations = Lists.newArrayList(); + for (String operationId : allFishingOperation) { + + prepareOperation(operationId, operations); + + } + + generatePdf(targetFile, locale, operations); + } + + /** + * Generate the PDF report for the given fishing operation. + * + * @param targetFile pdf file to generate + * @param fishingOperationId id of the fishing operation to export + * @param locale generated pdf locale + * @throws TuttiBusinessException + * @since 2.7 + */ + public void generateFishingOperationPDFFile(File targetFile, + String fishingOperationId, + Locale locale) throws TuttiBusinessException { + + List<Map<String, Object>> operations = Lists.newArrayList(); + + prepareOperation(fishingOperationId, operations); + + generatePdf(targetFile, locale, operations); + } + + protected void prepareOperation(String fishingOperationId, + List<Map<String, Object>> operations) { + + // get operation and catch data + boolean withCatchBatch = + persistenceService.isFishingOperationWithCatchBatch( + fishingOperationId); + + if (!withCatchBatch) { + if (log.isWarnEnabled()) { + log.warn("Skip fishing operation " + fishingOperationId + + " since no catchBatch associated."); + } + return; + } + + ExportCatchContext exportContext = ExportCatchContext.newExportContext( + persistenceService, weightComputingService, fishingOperationId); + + // create operation data model + Map<String, Object> op = createOperation(exportContext.getFishingOperation()); + + float totalWeight = exportContext.getCatchTotalWeight(); + + op.put("totalWeight", totalWeight); + op.put("totalSortedWeight", exportContext.getCatchTotalSortedWeight()); + + List<PdfExportBatchEntry> catchList = Lists.newArrayList(); + + // Species + if (exportContext.withSpeciesBatches()) { + List<ExportBatchEntry> speciesBatchEntries = + exportContext.getSpeciesBatchEntry(false); + + for (ExportBatchEntry entry : speciesBatchEntries) { + + SpeciesAbleBatch batch = entry.getBatch(); + Species species = batch.getSpecies(); + + Species speciesWithVerncularCode = + persistenceService.getSpeciesByReferenceTaxonIdWithVernacularCode(species.getReferenceTaxonId()); + + PdfExportBatchEntry pdfEntry = new PdfExportBatchEntry(species.getRefTaxCode(), + species.getName(), + speciesWithVerncularCode.getVernacularCode(), + entry.getSortedWeight(), + entry.getTotalWeight(), + totalWeight); + catchList.add(pdfEntry); + } + } + + // Benthos + if (exportContext.withBenthosBatches()) { + + List<ExportBatchEntry> benthosBatchEntries = + exportContext.getBenthosBatchEntry(false); + + float sortedWeight = 0f; + float benthosTotalWeight = 0f; + + for (ExportBatchEntry entry : benthosBatchEntries) { + sortedWeight += entry.getSortedWeight(); + benthosTotalWeight += entry.getTotalWeight(); + } + + PdfExportBatchEntry pdfEntry = new PdfExportBatchEntry( + _("tutti.service.operations.exportCatchesReport.specialRows.benthos.code"), + "", + _("tutti.service.operations.exportCatchesReport.specialRows.benthos.name"), + sortedWeight, + benthosTotalWeight, + totalWeight); + catchList.add(pdfEntry); + } + + // Inert and living not itemized + ExportBatchEntry inertLivingNotItemizedCatch = exportContext.getInertAndLivingNotItemizedCatch(); + + if (inertLivingNotItemizedCatch.getSortedWeight() > 0f) { + + PdfExportBatchEntry pdfExportBatchEntry = + new PdfExportBatchEntry( + _("tutti.service.operations.exportCatchesReport.specialRows.inertAndLivinngNotItemized.code"), + "", + _("tutti.service.operations.exportCatchesReport.specialRows.inertAndLivinngNotItemized.name"), + inertLivingNotItemizedCatch.getSortedWeight(), + inertLivingNotItemizedCatch.getTotalWeight(), + totalWeight); + catchList.add(pdfExportBatchEntry); + } + + if (log.isDebugEnabled()) { + + // recompute total for check + float computedTotalWeight = 0f; + float computedPercentage = 0f; + for (PdfExportBatchEntry entry : catchList) { + computedTotalWeight += entry.getTotalWeight(); + computedPercentage += entry.getPercentage(); + } + log.debug("TotalWeight: " + totalWeight); + log.debug("ComputedTotalWeight: " + computedTotalWeight); + log.debug("ComputedPercentage: " + computedPercentage); + } + op.put("catches", catchList); + operations.add(op); + } + + protected void generatePdf(File targetFile, Locale locale, List<Map<String, Object>> operations) { + + Map<String, Object> data = Maps.newHashMap(); + data.put("operations", operations); + // generate the report + OutputStream os = null; + try { + + // render freemarker template + Template mapTemplate = freemarkerConfiguration.getTemplate("catchesReport.ftl", locale); + + Writer out = new StringWriter(); + mapTemplate.process(data, out); + out.flush(); + + // render template output as pdf + os = new FileOutputStream(targetFile); + + ITextRenderer renderer = new ITextRenderer(); + renderer.setDocumentFromString(out.toString()); + renderer.layout(); + renderer.createPDF(os); + + os.close(); + + } catch (Exception ex) { + throw new TuttiTechnicalException(_("tutti.service.operations.exportCatchesReport.error"), ex); + } finally { + IOUtils.closeQuietly(os); + } + } + + protected Map<String, Object> createOperation(FishingOperation fishingOperation) { + Map<String, Object> op = Maps.newHashMap(); + op.put("number", fishingOperation.getFishingOperationNumber()); + op.put("station", fishingOperation.getStationNumber()); + op.put("rigNumber", fishingOperation.getMultirigAggregation()); + op.put("startDate", fishingOperation.getGearShootingStartDate()); + op.put("endDate", fishingOperation.getGearShootingEndDate()); + + return op; + } + +} Added: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/ExportCatchContext.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/ExportCatchContext.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/ExportCatchContext.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,337 @@ +package fr.ifremer.tutti.service.export.pdf; + +import com.google.common.base.Predicate; +import com.google.common.collect.Lists; +import com.google.common.collect.Maps; +import fr.ifremer.tutti.persistence.entities.TuttiEntities; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; +import fr.ifremer.tutti.persistence.entities.data.BenthosBatch; +import fr.ifremer.tutti.persistence.entities.data.CatchBatch; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.data.MarineLitterBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesAbleBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.catches.WeightComputingService; +import fr.ifremer.tutti.service.export.ExportBatchEntry; + +import java.util.List; +import java.util.Map; + +/** + * Created on 11/21/13. + * + * @author Tony Chemit <chemit@codelutin.com> + * @since XXX + */ +public class ExportCatchContext { + + final FishingOperation fishingOperation; + + final CatchBatch catchBatch; + + final BatchContainer<SpeciesBatch> rootSpeciesBatch; + + final BatchContainer<BenthosBatch> rootBenthosBatch; + + final BatchContainer<MarineLitterBatch> marineLitterBatches; + + final Predicate<SpeciesAbleBatch> vracPredicate; + + public static ExportCatchContext newExportContext(PersistenceService persistenceService, + WeightComputingService weightComputingService, + String fishingOperationId) { + + FishingOperation fishingOperation = + persistenceService.getFishingOperation(fishingOperationId); + + CatchBatch catchBatch = + persistenceService.getCatchBatchFromFishingOperation(fishingOperationId); + + BatchContainer<SpeciesBatch> rootSpeciesBatch = + weightComputingService.getComputedSpeciesBatches(fishingOperationId); + + BatchContainer<BenthosBatch> rootBenthosBatch = + weightComputingService.getComputedBenthosBatches(fishingOperationId); + + BatchContainer<MarineLitterBatch> marineLitterBatches = + weightComputingService.getComputedMarineLitterBatches( + fishingOperationId, + catchBatch.getMarineLitterTotalWeight()); + weightComputingService.computeCatchBatchWeights(catchBatch, + rootSpeciesBatch, + rootBenthosBatch, + marineLitterBatches); + + Predicate<SpeciesAbleBatch> vracPredicate = persistenceService.getVracBatchPredicate(); + + ExportCatchContext result = new ExportCatchContext(vracPredicate, + fishingOperation, + catchBatch, + rootSpeciesBatch, + rootBenthosBatch, + marineLitterBatches); + return result; + + } + + private ExportCatchContext(Predicate<SpeciesAbleBatch> vracPredicate, + FishingOperation fishingOperation, + CatchBatch catchBatch, + BatchContainer<SpeciesBatch> rootSpeciesBatch, + BatchContainer<BenthosBatch> rootBenthosBatch, + BatchContainer<MarineLitterBatch> marineLitterBatches) { + this.vracPredicate = vracPredicate; + this.fishingOperation = fishingOperation; + this.catchBatch = catchBatch; + this.rootSpeciesBatch = rootSpeciesBatch; + this.rootBenthosBatch = rootBenthosBatch; + this.marineLitterBatches = marineLitterBatches; + } + + public FishingOperation getFishingOperation() { + return fishingOperation; + } + + public float getCatchTotalWeight() { + float result = TuttiEntities.getValueOrComputedValue( + catchBatch.getCatchTotalWeight(), + catchBatch.getCatchTotalComputedWeight()); + return result; + } + + public float getCatchTotalSortedWeight() { + return catchBatch.getSpeciesTotalSampleSortedComputedWeight() + + catchBatch.getBenthosTotalSampleSortedComputedWeight(); + } + + public boolean withSpeciesBatches() { + return rootSpeciesBatch != null && !rootSpeciesBatch.isEmptyChildren(); + } + + public boolean withBenthosBatches() { + return rootBenthosBatch != null && !rootBenthosBatch.isEmptyChildren(); + } + + public List<ExportBatchEntry> getSpeciesBatchEntry(boolean computeNumber) { + List<ExportBatchEntry> catchList = Lists.newArrayList(); + + if (withSpeciesBatches()) { + + Map<Species, ExportBatchEntry> catches = Maps.newLinkedHashMap(); + + // ratio total species weight / total sorted sampled species weight + float speciesRatio = getSpeciesElevationRate(); + + List<SpeciesBatch> batches = rootSpeciesBatch.getChildren(); + for (SpeciesBatch batch : batches) { + + createExportBatchCatch( + batch, + catches, + speciesRatio, + computeNumber); + } + catchList.addAll(catches.values()); + } + return catchList; + } + + public List<ExportBatchEntry> getBenthosBatchEntry(boolean computeNumber) { + List<ExportBatchEntry> catchList = Lists.newArrayList(); + + if (withBenthosBatches()) { + + Map<Species, ExportBatchEntry> catches = Maps.newLinkedHashMap(); + + // ratio total species weight / total sorted sampled species weight + float speciesRatio = getBenthosElevationRate(); + + List<BenthosBatch> batches = rootBenthosBatch.getChildren(); + for (BenthosBatch batch : batches) { + + createExportBatchCatch( + batch, + catches, + speciesRatio, + computeNumber); + } + + catchList.addAll(catches.values()); + } + return catchList; + } + + public ExportBatchEntry getInertAndLivingNotItemizedCatch() { + + ExportBatchEntry result = new ExportBatchEntry(null); + + float speciesRatio = getSpeciesElevationRate(); + float benthosRatio = getBenthosElevationRate(); + + Float speciesInterWeight = TuttiEntities.getValueOrComputedValue( + catchBatch.getSpeciesTotalInertWeight(), + catchBatch.getSpeciesTotalInertComputedWeight()); + + if (speciesInterWeight != null) { + result.addSortedWeight(speciesInterWeight); + result.addTotalWeight(speciesInterWeight * speciesRatio); + } + + Float speciesLivingNotItemizedWeigth = TuttiEntities.getValueOrComputedValue( + catchBatch.getSpeciesTotalLivingNotItemizedWeight(), + catchBatch.getSpeciesTotalLivingNotItemizedComputedWeight()); + + if (speciesLivingNotItemizedWeigth != null) { + result.addSortedWeight(speciesLivingNotItemizedWeigth); + result.addTotalWeight(speciesLivingNotItemizedWeigth * speciesRatio); + } + + Float benthosInterWeight = TuttiEntities.getValueOrComputedValue( + catchBatch.getBenthosTotalInertWeight(), + catchBatch.getBenthosTotalInertComputedWeight()); + + if (benthosInterWeight != null) { + result.addSortedWeight(benthosInterWeight); + result.addTotalWeight(benthosInterWeight * benthosRatio); + } + + Float benthosLivingNotItemizedWeight = TuttiEntities.getValueOrComputedValue( + catchBatch.getBenthosTotalLivingNotItemizedWeight(), + catchBatch.getBenthosTotalLivingNotItemizedComputedWeight()); + + if (benthosLivingNotItemizedWeight != null) { + result.addSortedWeight(benthosLivingNotItemizedWeight); + result.addTotalWeight(benthosLivingNotItemizedWeight * benthosRatio); + } + + return result; + } + + public boolean isVracBatch(SpeciesAbleBatch batch) { + return vracPredicate.apply(batch); + } + + protected float getSpeciesElevationRate() { + + float globalRatio = (getCatchTotalWeight() - catchBatch.getCatchTotalUnsortedComputedWeight()) / catchBatch.getCatchTotalSortedComputedWeight(); + + float speciesTotalSortedWeight = TuttiEntities.getValueOrComputedValue( + catchBatch.getSpeciesTotalSortedWeight(), + catchBatch.getSpeciesTotalSortedComputedWeight()); + + // ratio total species weight / total sorted sampled species weight + float result = globalRatio * speciesTotalSortedWeight; + if (catchBatch.getSpeciesTotalSampleSortedComputedWeight() > 0) { + result /= catchBatch.getSpeciesTotalSampleSortedComputedWeight(); + } + return result; + } + + protected float getBenthosElevationRate() { + + float globalRatio = (getCatchTotalWeight() - catchBatch.getCatchTotalUnsortedComputedWeight()) / catchBatch.getCatchTotalSortedComputedWeight(); + + float benthosTotalSortedWeight = TuttiEntities.getValueOrComputedValue( + catchBatch.getBenthosTotalSortedWeight(), + catchBatch.getBenthosTotalSortedComputedWeight()); + + // ratio total benthos weight / total sorted sampled benthos weight + float result = globalRatio * benthosTotalSortedWeight; + if (catchBatch.getBenthosTotalSampleSortedComputedWeight() > 0) { + result /= catchBatch.getBenthosTotalSampleSortedComputedWeight(); + } + return result; + } + + protected void createExportBatchCatch(SpeciesAbleBatch batch, + Map<Species, ExportBatchEntry> catches, + float ratio, + boolean computeNumber) { + + Species species = batch.getSpecies(); + + ExportBatchEntry ktch = catches.get(species); + if (ktch == null) { + ktch = new ExportBatchEntry(batch); + catches.put(species, ktch); + } + + float sortedWeight = TuttiEntities.getValueOrComputedValue( + batch.getSampleCategoryWeight(), + batch.getSampleCategoryComputedWeight()); + + ktch.addSortedWeight(sortedWeight); + + boolean isVracBatch = isVracBatch(batch); + float speciesTotalWeight = sortedWeight; + if (isVracBatch) { + speciesTotalWeight *= ratio; + } + ktch.addTotalWeight(speciesTotalWeight); + + if (computeNumber) { + int number = Math.round(computeNumber(batch, 1.0f)); + if (isVracBatch) { + number *= ratio; + } + ktch.addNumber(number); + } + } + + protected float computeNumber(SpeciesAbleBatch batch, float rf) { + float result; + + float weight = TuttiEntities.getValueOrComputedValue( + batch.getSampleCategoryWeight(), + batch.getSampleCategoryComputedWeight()); + + if (batch.isChildBatchsEmpty()) { + + // on a leaf, get his weight + + Integer number = TuttiEntities.getValueOrComputedValue( + batch.getNumber(), + batch.getComputedNumber()); + if (number == null) { + + // no count + number = 0; + } + + // get the sample weight + Float subweight = TuttiEntities.getValueOrComputedValue( + batch.getWeight(), + batch.getComputedWeight()); + + if (subweight != null) { + + // with sub sample, update the raising factor + rf *= weight / subweight; + } + + result = number.floatValue() * rf; + } else { + + // get total weight of all childs + float totalWeight = 0.f; + for (SpeciesAbleBatch child : batch.getChildBatchs()) { + totalWeight += TuttiEntities.getValueOrComputedValue( + child.getSampleCategoryWeight(), + child.getSampleCategoryComputedWeight()); + } + + result = 0f; + + float rf2 = rf * weight / totalWeight; + // sum result of each child + for (SpeciesAbleBatch child : batch.getChildBatchs()) { + + result += computeNumber(child, rf2); + } + + } + return result; + } +} Property changes on: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/ExportCatchContext.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision Added: svn:eol-style + native Added: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/PdfExportBatchEntry.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/PdfExportBatchEntry.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/PdfExportBatchEntry.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,53 @@ +package fr.ifremer.tutti.service.export.pdf; + +import fr.ifremer.tutti.service.export.ExportBatchEntry; + +/** + * To store a species or batch entry within his speices informations, + * his sorted weight, total weight and percentage amoong the total catch + * weight. + * + * @since 2.10 + */ +public class PdfExportBatchEntry extends ExportBatchEntry { + + protected final String code; + + protected final String scientificName; + + protected final String commonName; + + protected float percentage; + + public PdfExportBatchEntry(String code, + String scientificName, + String commonName, + float sortedWeight, float totalWeight, + float catchTotalWeight) { + super(null); + + this.code = code; + this.scientificName = scientificName; + this.commonName = commonName; + + addSortedWeight(sortedWeight); + addTotalWeight(totalWeight); + this.percentage = 100 * totalWeight / catchTotalWeight; + } + + public String getCode() { + return code; + } + + public String getScientificName() { + return scientificName; + } + + public String getCommonName() { + return commonName; + } + + public float getPercentage() { + return percentage; + } +} Property changes on: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/pdf/PdfExportBatchEntry.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision Added: svn:eol-style + native Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/sumatra/CatchRow.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchRow.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/sumatra/CatchRow.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/sumatra/CatchRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,87 @@ +package fr.ifremer.tutti.service.export.sumatra; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.referential.Species; + +import java.io.Serializable; + +/** + * @author kmorin <kmorin@codelutin.com> + * @since 2.0 + */ +public class CatchRow implements Serializable { + + private static final long serialVersionUID = 1L; + + public static final String PROPERTY_FISHING_OPERATION = "fishingOperation"; + + public static final String PROPERTY_SPECIES = "species"; + + public static final String PROPERTY_WEIGHT = "weight"; + + public static final String PROPERTY_NUMBER = "number"; + + protected FishingOperation fishingOperation; + + protected Species species; + + protected Float weight; + + protected Integer number; + + public FishingOperation getFishingOperation() { + return fishingOperation; + } + + public void setFishingOperation(FishingOperation fishingOperation) { + this.fishingOperation = fishingOperation; + } + + public Species getSpecies() { + return species; + } + + public void setSpecies(Species species) { + this.species = species; + } + + public Float getWeight() { + return weight; + } + + public void setWeight(Float weight) { + this.weight = weight; + } + + public Integer getNumber() { + return number; + } + + public void setNumber(Integer number) { + this.number = number; + } +} Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/sumatra/CatchRowModel.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchRowModel.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/sumatra/CatchRowModel.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/sumatra/CatchRowModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,70 @@ +package fr.ifremer.tutti.service.export.sumatra; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.base.Preconditions; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.service.TuttiCsvUtil; +import org.nuiton.csv.Common; +import org.nuiton.csv.ValueFormatter; + +import static org.nuiton.i18n.I18n._; + +/** + * @author kmorin <kmorin@codelutin.com> + * @since 2.0 + */ +public class CatchRowModel extends TuttiCsvUtil.AbstractTuttiImportExportModel<CatchRow> { + + public CatchRowModel(char separator) { + super(separator); + + // export definition + + newColumnForExport(_("tutti.service.exportSumatra.header.station"), CatchRow.PROPERTY_FISHING_OPERATION, new ValueFormatter<FishingOperation>() { + @Override + public String format(FishingOperation o) { + Preconditions.checkNotNull(o, _("tutti.service.exportSumatra.error.station.null")); + return o.getStationNumber(); + } + }); + newColumnForExport(_("tutti.service.exportSumatra.header.species"), CatchRow.PROPERTY_SPECIES, new ValueFormatter<Species>() { + @Override + public String format(Species s) { + Preconditions.checkNotNull(s, _("tutti.service.exportSumatra.error.species.null")); + return s.getName(); + } + }); + newColumnForExport(_("tutti.service.exportSumatra.header.weight"), CatchRow.PROPERTY_WEIGHT, Common.PRIMITIVE_FLOAT); + newColumnForExport(_("tutti.service.exportSumatra.header.number"), CatchRow.PROPERTY_NUMBER, Common.PRIMITIVE_INTEGER); + } + + @Override + public CatchRow newEmptyInstance() { + return new CatchRow(); + } + +} Copied: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/sumatra/CatchesSumatraExportService.java (from rev 1361, trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchesSumatraExportService.java) =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/sumatra/CatchesSumatraExportService.java (rev 0) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/sumatra/CatchesSumatraExportService.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,375 @@ +package fr.ifremer.tutti.service.export.sumatra; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.base.Charsets; +import com.google.common.base.Preconditions; +import com.google.common.collect.Lists; +import com.google.common.io.Files; +import fr.ifremer.tutti.TuttiTechnicalException; +import fr.ifremer.tutti.persistence.entities.data.Cruise; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.service.AbstractTuttiService; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.TuttiServiceContext; +import fr.ifremer.tutti.service.catches.WeightComputingService; +import fr.ifremer.tutti.service.export.ExportBatchEntry; +import fr.ifremer.tutti.service.export.pdf.ExportCatchContext; +import org.apache.commons.io.IOUtils; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.nuiton.csv.Export; + +import java.io.BufferedWriter; +import java.io.File; +import java.util.List; + +import static org.nuiton.i18n.I18n._; + +/** + * @author kmorin <kmorin@codelutin.com> + * @since 2.0 + */ +public class CatchesSumatraExportService extends AbstractTuttiService { + + private static final Log log = + LogFactory.getLog(CatchesSumatraExportService.class); + + protected PersistenceService persistenceService; + + protected WeightComputingService weightComputingService; + + @Override + public void setServiceContext(TuttiServiceContext context) { + super.setServiceContext(context); + persistenceService = getService(PersistenceService.class); + weightComputingService = getService(WeightComputingService.class); + } + + /** + * Export selected cruise with the csv sumatra format. + * + * @param file where to generate report + * @param cruiseId id of the cruise to export + * @since 2.0 + */ + public void exportCruiseForSumatra(File file, + String cruiseId) { + + Preconditions.checkNotNull(cruiseId, "Cannot export a null cruise"); + Preconditions.checkNotNull(file, "Cannot export to a null file"); + + if (log.isInfoEnabled()) { + log.info("Will export cruise " + cruiseId + " to file: " + file); + } + + Cruise cruise = persistenceService.getCruise(cruiseId); + Preconditions.checkNotNull(cruise, "Cruise [" + cruiseId + "] not found"); + + List<String> operations = + persistenceService.getAllFishingOperationIds(cruiseId); + + prepareOperationsAndExport(file, operations); + } + + /** + * Export selected fishing operation with the csv sumatra format. + * + * @param file where to generate report + * @param cruiseId id of the cruise to export + * @param fishingOperationId id of the fishing operation to export + * @since 2.7 + */ + public void exportFishingOperationForSumatra(File file, + String cruiseId, + String fishingOperationId) { + + Preconditions.checkNotNull(file, "Cannot export to a null file"); + Preconditions.checkNotNull(cruiseId, "Cannot export a null cruise"); + Preconditions.checkNotNull(fishingOperationId, "Cannot export a null fishing operation"); + + if (log.isInfoEnabled()) { + log.info("Will export fishing operation " + + fishingOperationId + " to file: " + file); + } + + Cruise cruise = persistenceService.getCruise(cruiseId); + Preconditions.checkNotNull(cruise, "Cruise [" + cruiseId + "] not found"); + + List<String> operations = Lists.newArrayList(fishingOperationId); + + prepareOperationsAndExport(file, operations); + } + + protected void prepareOperationsAndExport(File file, + List<String> operations) { + + List<CatchRow> rows = Lists.newArrayList(); + + if (operations != null) { + for (String operationId : operations) { + + prepareFishingOperation(rows, operationId); + } + } + + CatchRowModel csvModel = + new CatchRowModel(context.getConfig().getCsvSeparator()); + + BufferedWriter writer = null; + try { + writer = Files.newWriter(file, Charsets.UTF_8); + Export export = Export.newExport(csvModel, rows); + export.write(writer); + writer.close(); + + } catch (Exception e) { + throw new TuttiTechnicalException(_("tutti.service.sumatra.export.error", file), e); + } finally { + IOUtils.closeQuietly(writer); + } + } + + protected void prepareFishingOperation(List<CatchRow> rows, String operationId) { + + ExportCatchContext exportContext = ExportCatchContext.newExportContext( + persistenceService, weightComputingService, operationId); + + FishingOperation operation = exportContext.getFishingOperation(); + + // Species + if (exportContext.withSpeciesBatches()) { + + List<ExportBatchEntry> entries = + exportContext.getSpeciesBatchEntry(true); + + for (ExportBatchEntry entry : entries) { + + CatchRow row = new CatchRow(); + row.setFishingOperation(operation); + row.setSpecies(entry.getBatch().getSpecies()); + row.setWeight(entry.getTotalWeight()); + row.setNumber(entry.getTotalNumber()); + rows.add(row); + } + } + + // Benthos + if (exportContext.withBenthosBatches()) { + + List<ExportBatchEntry> entries = + exportContext.getBenthosBatchEntry(true); + + for (ExportBatchEntry entry : entries) { + + CatchRow row = new CatchRow(); + row.setFishingOperation(operation); + row.setSpecies(entry.getBatch().getSpecies()); + row.setWeight(entry.getTotalWeight()); + row.setNumber(entry.getTotalNumber()); + rows.add(row); + } + } + +// FishingOperation operation = persistenceService.getFishingOperation(operationId); +// +// CatchBatch catchBatch = persistenceService.getCatchBatchFromFishingOperation( +// operationId); +// +// BatchContainer<SpeciesBatch> speciesBatchContainer = +// weightComputingService.getComputedSpeciesBatches(operationId); +// BatchContainer<BenthosBatch> benthosBatchContainer = +// weightComputingService.getComputedBenthosBatches(operationId); +// +// BatchContainer<MarineLitterBatch> marineLitterBatch = +// weightComputingService.getComputedMarineLitterBatches( +// operationId, catchBatch.getMarineLitterTotalWeight()); +// +// weightComputingService.computeCatchBatchWeights(catchBatch, +// speciesBatchContainer, +// benthosBatchContainer, +// marineLitterBatch); +// +// Float totalWeight = TuttiEntities.getValueOrComputedValue( +// catchBatch.getCatchTotalWeight(), +// catchBatch.getCatchTotalComputedWeight()); +// +// Float totalUnsortedWeight = +// TuttiEntities.getValueOrComputedValue( +// catchBatch.getCatchTotalUnsortedComputedWeight(), +// 0f); +// +// Float totalSortedSpeciesWeight = TuttiEntities.getValueOrComputedValue( +// catchBatch.getSpeciesTotalSortedWeight(), +// catchBatch.getSpeciesTotalSortedComputedWeight()); +// +// Float totalSampleSortedSpeciesWeight = +// catchBatch.getSpeciesTotalSampleSortedComputedWeight(); +// +// Float totalSortedBenthosWeight = TuttiEntities.getValueOrComputedValue( +// catchBatch.getBenthosTotalSortedWeight(), +// catchBatch.getBenthosTotalSortedComputedWeight()); +// +// Float totalSampleSortedBenthosWeight = +// catchBatch.getBenthosTotalSampleSortedComputedWeight(); +// +// Float totalSortedWeight = catchBatch.getCatchTotalSortedComputedWeight(); +// +// //FIXME tchemit 2013-07-12 J'utilise en fait la formule (Poids de la capture totale - poids du HV dans la capture totale) / (poids total capture triée) +// // (Poids de la capture totale - poids du HV dans la capture totale) / (poids total capture triée - poids du HV dans la capture totale) +// +// Float catchRaisingFactor = totalWeight == null || totalUnsortedWeight == null || totalSortedWeight == null ? 1 : (totalWeight - totalUnsortedWeight) / totalSortedWeight; +// +// Float speciesCatchRaisingFactor = totalSampleSortedSpeciesWeight == null || totalSortedSpeciesWeight == null || totalSampleSortedSpeciesWeight == null ? 1 : (totalSampleSortedSpeciesWeight == 0 ? 0 : (totalSortedSpeciesWeight / totalSampleSortedSpeciesWeight) * catchRaisingFactor); +// Float benthosCatchRaisingFactor = totalSampleSortedBenthosWeight == null || totalSortedBenthosWeight == null || totalSampleSortedBenthosWeight == null ? 1 : (totalSampleSortedBenthosWeight == 0 ? 0 : (totalSortedBenthosWeight / totalSampleSortedBenthosWeight) * catchRaisingFactor); +// +// speciesCatchRaisingFactor *= catchRaisingFactor; +// benthosCatchRaisingFactor *= catchRaisingFactor; +// +// // add species rows +// Map<Species, CatchRow> rowMap = Maps.newLinkedHashMap(); +// if (speciesBatchContainer != null) { +// List<SpeciesBatch> speciesBatches = speciesBatchContainer.getChildren(); +// for (SpeciesBatch batch : speciesBatches) { +// Species sp = batch.getSpecies(); +// +// int number = Math.round(computeNumber(batch, 1.0f)); +// +// Float weight = TuttiEntities.getValueOrComputedValue( +// batch.getSampleCategoryWeight(), +// batch.getSampleCategoryComputedWeight()); +// +// weight *= speciesCatchRaisingFactor; +// number = (int) (speciesCatchRaisingFactor * (float) number); +// +// CatchRow row = rowMap.get(sp); +// if (row == null) { +// row = new CatchRow(); +// row.setFishingOperation(operation); +// row.setSpecies(sp); +// row.setWeight(weight); +// row.setNumber(number); +// +// } else { +// row.setWeight(row.getWeight() + weight); +// row.setNumber(row.getNumber() + number); +// } +// rowMap.put(sp, row); +// } +// rows.addAll(rowMap.values()); +// } +// +// // add benthos rows +// rowMap.clear(); +// if (benthosBatchContainer != null) { +// List<BenthosBatch> benthosBatches = benthosBatchContainer.getChildren(); +// for (BenthosBatch batch : benthosBatches) { +// Species sp = batch.getSpecies(); +// +// int number = Math.round(computeNumber(batch, 1.0f)); +// +// Float weight = TuttiEntities.getValueOrComputedValue( +// batch.getSampleCategoryWeight(), +// batch.getSampleCategoryComputedWeight()); +// +// weight *= benthosCatchRaisingFactor; +// number = (int) (benthosCatchRaisingFactor * (float) number); +// +// CatchRow row = rowMap.get(sp); +// if (row == null) { +// row = new CatchRow(); +// row.setFishingOperation(operation); +// row.setSpecies(sp); +// row.setWeight(weight); +// row.setNumber(number); +// +// } else { +// row.setWeight(row.getWeight() + weight); +// row.setNumber(row.getNumber() + number); +// } +// rowMap.put(sp, row); +// } +// } +// +// rows.addAll(rowMap.values()); + } + + +// protected float computeNumber(SpeciesAbleBatch batch, float rf) { +// float result; +// +// float weight = TuttiEntities.getValueOrComputedValue( +// batch.getSampleCategoryWeight(), +// batch.getSampleCategoryComputedWeight()); +// +// if (batch.isChildBatchsEmpty()) { +// +// // on a leaf, get his weight +// +// Integer number = TuttiEntities.getValueOrComputedValue( +// batch.getNumber(), +// batch.getComputedNumber()); +// if (number == null) { +// +// // no count +// number = 0; +// } +// +// // get the sample weight +// Float subweight = TuttiEntities.getValueOrComputedValue( +// batch.getWeight(), +// batch.getComputedWeight()); +// +// if (subweight != null) { +// +// // with sub sample, update the raising factor +// rf *= weight / subweight; +// } +// +// result = number.floatValue() * rf; +// } else { +// +// // get total weight of all childs +// float totalWeight = 0.f; +// for (SpeciesAbleBatch child : batch.getChildBatchs()) { +// totalWeight += TuttiEntities.getValueOrComputedValue( +// child.getSampleCategoryWeight(), +// child.getSampleCategoryComputedWeight()); +// } +// +// result = 0f; +// +// float rf2 = rf * weight / totalWeight; +// // sum result of each child +// for (SpeciesAbleBatch child : batch.getChildBatchs()) { +// +// result += computeNumber(child, rf2); +// } +// +// } +// return result; +// } + +} Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchRow.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchRow.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchRow.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,87 +0,0 @@ -package fr.ifremer.tutti.service.sumatra; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.referential.Species; - -import java.io.Serializable; - -/** - * @author kmorin <kmorin@codelutin.com> - * @since 2.0 - */ -public class CatchRow implements Serializable { - - private static final long serialVersionUID = 1L; - - public static final String PROPERTY_FISHING_OPERATION = "fishingOperation"; - - public static final String PROPERTY_SPECIES = "species"; - - public static final String PROPERTY_WEIGHT = "weight"; - - public static final String PROPERTY_NUMBER = "number"; - - protected FishingOperation fishingOperation; - - protected Species species; - - protected Float weight; - - protected Integer number; - - public FishingOperation getFishingOperation() { - return fishingOperation; - } - - public void setFishingOperation(FishingOperation fishingOperation) { - this.fishingOperation = fishingOperation; - } - - public Species getSpecies() { - return species; - } - - public void setSpecies(Species species) { - this.species = species; - } - - public Float getWeight() { - return weight; - } - - public void setWeight(Float weight) { - this.weight = weight; - } - - public Integer getNumber() { - return number; - } - - public void setNumber(Integer number) { - this.number = number; - } -} Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchRowModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchRowModel.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchRowModel.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,70 +0,0 @@ -package fr.ifremer.tutti.service.sumatra; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import com.google.common.base.Preconditions; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.service.TuttiCsvUtil; -import org.nuiton.csv.Common; -import org.nuiton.csv.ValueFormatter; - -import static org.nuiton.i18n.I18n._; - -/** - * @author kmorin <kmorin@codelutin.com> - * @since 2.0 - */ -public class CatchRowModel extends TuttiCsvUtil.AbstractTuttiImportExportModel<CatchRow> { - - public CatchRowModel(char separator) { - super(separator); - - // export definition - - newColumnForExport(_("tutti.service.exportSumatra.header.station"), CatchRow.PROPERTY_FISHING_OPERATION, new ValueFormatter<FishingOperation>() { - @Override - public String format(FishingOperation o) { - Preconditions.checkNotNull(o, _("tutti.service.exportSumatra.error.station.null")); - return o.getStationNumber(); - } - }); - newColumnForExport(_("tutti.service.exportSumatra.header.species"), CatchRow.PROPERTY_SPECIES, new ValueFormatter<Species>() { - @Override - public String format(Species s) { - Preconditions.checkNotNull(s, _("tutti.service.exportSumatra.error.species.null")); - return s.getName(); - } - }); - newColumnForExport(_("tutti.service.exportSumatra.header.weight"), CatchRow.PROPERTY_WEIGHT, Common.PRIMITIVE_FLOAT); - newColumnForExport(_("tutti.service.exportSumatra.header.number"), CatchRow.PROPERTY_NUMBER, Common.PRIMITIVE_INTEGER); - } - - @Override - public CatchRow newEmptyInstance() { - return new CatchRow(); - } - -} Deleted: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchesSumatraExportService.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchesSumatraExportService.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/sumatra/CatchesSumatraExportService.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,344 +0,0 @@ -package fr.ifremer.tutti.service.sumatra; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import com.google.common.base.Charsets; -import com.google.common.base.Preconditions; -import com.google.common.collect.Lists; -import com.google.common.collect.Maps; -import com.google.common.io.Files; -import fr.ifremer.tutti.TuttiTechnicalException; -import fr.ifremer.tutti.persistence.entities.TuttiEntities; -import fr.ifremer.tutti.persistence.entities.data.BatchContainer; -import fr.ifremer.tutti.persistence.entities.data.BenthosBatch; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.MarineLitterBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesAbleBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.service.AbstractTuttiService; -import fr.ifremer.tutti.service.PersistenceService; -import fr.ifremer.tutti.service.TuttiServiceContext; -import fr.ifremer.tutti.service.catches.WeightComputingService; -import org.apache.commons.io.IOUtils; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.nuiton.csv.Export; - -import java.io.BufferedWriter; -import java.io.File; -import java.util.List; -import java.util.Map; - -import static org.nuiton.i18n.I18n._; - -/** - * @author kmorin <kmorin@codelutin.com> - * @since 2.0 - */ -public class CatchesSumatraExportService extends AbstractTuttiService { - - private static final Log log = - LogFactory.getLog(CatchesSumatraExportService.class); - - protected PersistenceService persistenceService; - - protected WeightComputingService weightComputingService; - - @Override - public void setServiceContext(TuttiServiceContext context) { - super.setServiceContext(context); - persistenceService = getService(PersistenceService.class); - weightComputingService = getService(WeightComputingService.class); - } - - /** - * Export selected cruise with the csv sumatra format. - * - * @param file where to generate report - * @param cruiseId id of the cruise to export - * @since 2.0 - */ - public void exportCruiseForSumatra(File file, - String cruiseId) { - - Preconditions.checkNotNull(cruiseId, "Cannot export a null cruise"); - Preconditions.checkNotNull(file, "Cannot export to a null file"); - - if (log.isInfoEnabled()) { - log.info("Will export cruise " + cruiseId + " to file: " + file); - } - - Cruise cruise = persistenceService.getCruise(cruiseId); - Preconditions.checkNotNull(cruise, "Cruise [" + cruiseId + "] not found"); - - List<String> operations = - persistenceService.getAllFishingOperationIds(cruiseId); - - prepareOperationsAndExport(file, operations); - } - - /** - * Export selected fishing operation with the csv sumatra format. - * - * @param file where to generate report - * @param cruiseId id of the cruise to export - * @param fishingOperationId id of the fishing operation to export - * @since 2.7 - */ - public void exportFishingOperationForSumatra(File file, - String cruiseId, - String fishingOperationId) { - - Preconditions.checkNotNull(file, "Cannot export to a null file"); - Preconditions.checkNotNull(cruiseId, "Cannot export a null cruise"); - Preconditions.checkNotNull(fishingOperationId, "Cannot export a null fishing operation"); - - if (log.isInfoEnabled()) { - log.info("Will export fishing operation " + - fishingOperationId + " to file: " + file); - } - - Cruise cruise = persistenceService.getCruise(cruiseId); - Preconditions.checkNotNull(cruise, "Cruise [" + cruiseId + "] not found"); - - List<String> operations = Lists.newArrayList(fishingOperationId); - - prepareOperationsAndExport(file, operations); - } - - protected void prepareOperationsAndExport(File file, - List<String> operations) { - - List<CatchRow> rows = Lists.newArrayList(); - - if (operations != null) { - for (String operationId : operations) { - - prepareFishingOperation(rows, operationId); - } - } - - CatchRowModel csvModel = - new CatchRowModel(context.getConfig().getCsvSeparator()); - - BufferedWriter writer = null; - try { - writer = Files.newWriter(file, Charsets.UTF_8); - Export export = Export.newExport(csvModel, rows); - export.write(writer); - writer.close(); - - } catch (Exception e) { - throw new TuttiTechnicalException(_("tutti.service.sumatra.export.error", file), e); - } finally { - IOUtils.closeQuietly(writer); - } - } - - protected void prepareFishingOperation(List<CatchRow> rows, String operationId) { - - FishingOperation operation = persistenceService.getFishingOperation(operationId); - - CatchBatch catchBatch = persistenceService.getCatchBatchFromFishingOperation( - operationId); - - BatchContainer<SpeciesBatch> speciesBatchContainer = - weightComputingService.getComputedSpeciesBatches(operationId); - BatchContainer<BenthosBatch> benthosBatchContainer = - weightComputingService.getComputedBenthosBatches(operationId); - - BatchContainer<MarineLitterBatch> marineLitterBatch = - weightComputingService.getComputedMarineLitterBatches( - operationId, catchBatch.getMarineLitterTotalWeight()); - - weightComputingService.computeCatchBatchWeights(catchBatch, - speciesBatchContainer, - benthosBatchContainer, - marineLitterBatch); - - Float totalWeight = TuttiEntities.getValueOrComputedValue( - catchBatch.getCatchTotalWeight(), - catchBatch.getCatchTotalComputedWeight()); - - Float totalUnsortedWeight = - TuttiEntities.getValueOrComputedValue( - catchBatch.getCatchTotalUnsortedComputedWeight(), - 0f); - - Float totalSortedSpeciesWeight = TuttiEntities.getValueOrComputedValue( - catchBatch.getSpeciesTotalSortedWeight(), - catchBatch.getSpeciesTotalSortedComputedWeight()); - - Float totalSampleSortedSpeciesWeight = - catchBatch.getSpeciesTotalSampleSortedComputedWeight(); - - Float totalSortedBenthosWeight = TuttiEntities.getValueOrComputedValue( - catchBatch.getBenthosTotalSortedWeight(), - catchBatch.getBenthosTotalSortedComputedWeight()); - - Float totalSampleSortedBenthosWeight = - catchBatch.getBenthosTotalSampleSortedComputedWeight(); - - Float totalSortedWeight = catchBatch.getCatchTotalSortedComputedWeight(); - - //FIXME tchemit 2013-07-12 J'utilise en fait la formule (Poids de la capture totale - poids du HV dans la capture totale) / (poids total capture triée) - // (Poids de la capture totale - poids du HV dans la capture totale) / (poids total capture triée - poids du HV dans la capture totale) - - Float catchRaisingFactor = totalWeight == null || totalUnsortedWeight == null || totalSortedWeight == null ? 1 : (totalWeight - totalUnsortedWeight) / totalSortedWeight; - - Float speciesCatchRaisingFactor = totalSampleSortedSpeciesWeight == null || totalSortedSpeciesWeight == null || totalSampleSortedSpeciesWeight == null ? 1 : (totalSampleSortedSpeciesWeight == 0 ? 0 : (totalSortedSpeciesWeight / totalSampleSortedSpeciesWeight) * catchRaisingFactor); - Float benthosCatchRaisingFactor = totalSampleSortedBenthosWeight == null || totalSortedBenthosWeight == null || totalSampleSortedBenthosWeight == null ? 1 : (totalSampleSortedBenthosWeight == 0 ? 0 : (totalSortedBenthosWeight / totalSampleSortedBenthosWeight) * catchRaisingFactor); - - speciesCatchRaisingFactor *= catchRaisingFactor; - benthosCatchRaisingFactor *= catchRaisingFactor; - - // add species rows - Map<Species, CatchRow> rowMap = Maps.newLinkedHashMap(); - if (speciesBatchContainer != null) { - List<SpeciesBatch> speciesBatches = speciesBatchContainer.getChildren(); - for (SpeciesBatch batch : speciesBatches) { - Species sp = batch.getSpecies(); - - int number = Math.round(computeNumber(batch, 1.0f)); - - Float weight = TuttiEntities.getValueOrComputedValue( - batch.getSampleCategoryWeight(), - batch.getSampleCategoryComputedWeight()); - - weight *= speciesCatchRaisingFactor; - number = (int) (speciesCatchRaisingFactor * (float) number); - - CatchRow row = rowMap.get(sp); - if (row == null) { - row = new CatchRow(); - row.setFishingOperation(operation); - row.setSpecies(sp); - row.setWeight(weight); - row.setNumber(number); - - } else { - row.setWeight(row.getWeight() + weight); - row.setNumber(row.getNumber() + number); - } - rowMap.put(sp, row); - } - rows.addAll(rowMap.values()); - } - - // add benthos rows - rowMap.clear(); - if (benthosBatchContainer != null) { - List<BenthosBatch> benthosBatches = benthosBatchContainer.getChildren(); - for (BenthosBatch batch : benthosBatches) { - Species sp = batch.getSpecies(); - - int number = Math.round(computeNumber(batch, 1.0f)); - - Float weight = TuttiEntities.getValueOrComputedValue( - batch.getSampleCategoryWeight(), - batch.getSampleCategoryComputedWeight()); - - weight *= benthosCatchRaisingFactor; - number = (int) (benthosCatchRaisingFactor * (float) number); - - CatchRow row = rowMap.get(sp); - if (row == null) { - row = new CatchRow(); - row.setFishingOperation(operation); - row.setSpecies(sp); - row.setWeight(weight); - row.setNumber(number); - - } else { - row.setWeight(row.getWeight() + weight); - row.setNumber(row.getNumber() + number); - } - rowMap.put(sp, row); - } - } - - rows.addAll(rowMap.values()); - } - - - protected float computeNumber(SpeciesAbleBatch batch, float rf) { - float result; - - float weight = TuttiEntities.getValueOrComputedValue( - batch.getSampleCategoryWeight(), - batch.getSampleCategoryComputedWeight()); - - if (batch.isChildBatchsEmpty()) { - - // on a leaf, get his weight - - Integer number = TuttiEntities.getValueOrComputedValue( - batch.getNumber(), - batch.getComputedNumber()); - if (number == null) { - - // no count - number = 0; - } - - // get the sample weight - Float subweight = TuttiEntities.getValueOrComputedValue( - batch.getWeight(), - batch.getComputedWeight()); - - if (subweight != null) { - - // with sub sample, update the raising factor - rf *= weight / subweight; - } - - result = number.floatValue() * rf; - } else { - - // get total weight of all childs - float totalWeight = 0.f; - for (SpeciesAbleBatch child : batch.getChildBatchs()) { - totalWeight += TuttiEntities.getValueOrComputedValue( - child.getSampleCategoryWeight(), - child.getSampleCategoryComputedWeight()); - } - - result = 0f; - - float rf2 = rf * weight / totalWeight; - // sum result of each child - for (SpeciesAbleBatch child : batch.getChildBatchs()) { - - result += computeNumber(child, rf2); - } - - } - return result; - } - -} Deleted: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/catches/ExportCatchesReportServiceTest.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/catches/ExportCatchesReportServiceTest.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/catches/ExportCatchesReportServiceTest.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,70 +0,0 @@ -package fr.ifremer.tutti.service.catches; - -import fr.ifremer.tutti.service.PersistenceService; -import fr.ifremer.tutti.service.ServiceDbResource; -import fr.ifremer.tutti.service.TuttiServiceContext; -import org.junit.After; -import org.junit.Assert; -import org.junit.Before; -import org.junit.ClassRule; -import org.junit.Test; - -import java.io.File; -import java.util.Locale; - -/** - * Created on 11/19/13. - * - * @author Tony Chemit <chemit@codelutin.com> - * @since 2.10 - */ -public class ExportCatchesReportServiceTest { - - @ClassRule - public static final ServiceDbResource dbResource = - ServiceDbResource.readDb("dbMedits"); - - public static final String PROGRAM_ID = "CAM-MEDITS"; - - public static final String CRUISE_ID = "100001"; - - public static final String OPERATION_1_ID = "100106"; - - protected ExportCatchesReportService exportService; - - protected PersistenceService persistenceService; - - protected File dataDirectory; - - @Before - public void setUp() throws Exception { - - dataDirectory = dbResource.getServiceConfig().getDataDirectory(); - - TuttiServiceContext serviceContext = dbResource.getServiceContext(); - - persistenceService = serviceContext.getService(PersistenceService.class); - - serviceContext.getDataContext().open(serviceContext.getConfig(), persistenceService); - exportService = serviceContext.getService(ExportCatchesReportService.class); - } - - @After - public void tearDown() throws Exception { - - } - - @Test - public void generateFishingOperationPDFFile() throws Exception { - - File exportFile = new File(dataDirectory, "exportOperation.pdf"); - - Assert.assertFalse(exportFile.exists()); - - exportService.generateFishingOperationPDFFile(exportFile, - OPERATION_1_ID, - Locale.FRENCH); - - Assert.assertTrue(exportFile.exists()); - } -} Deleted: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/TuttiExportService2Test.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/TuttiExportService2Test.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/TuttiExportService2Test.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,264 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import com.google.common.io.Files; -import fr.ifremer.tutti.TuttiBusinessException; -import fr.ifremer.tutti.persistence.ProgressionModel; -import fr.ifremer.tutti.service.PersistenceService; -import fr.ifremer.tutti.service.ServiceDbResource; -import fr.ifremer.tutti.service.TuttiServiceContext; -import fr.ifremer.tutti.service.catches.WeightComputingService; -import org.junit.Assert; -import org.junit.Before; -import org.junit.ClassRule; -import org.junit.Test; - -import java.io.File; -import java.net.URL; -import java.util.List; - -/** - * Test export of catches. - * - * @author tchemit <chemit@codelutin.com> - * @since 2.3.2 - */ -public class TuttiExportService2Test { - - @ClassRule - public static final ServiceDbResource dbResource = - ServiceDbResource.readDb("dbExport"); - - public static final String PROGRAM_ID = "CAM-TEST_ELEVATION"; - - public static final String CRUISE_ID = "100003"; - - public static final String OPERATION_1_ID = "100112"; - - public static final String OPERATION_2_ID = "100113"; - - public static final String OPERATION_3_ID = "100114"; - - protected TuttiExportService service; - - protected ServiceDbResource.DataContext dataContext; - - protected File dataDirectory; - - @Before - public void setUp() throws Exception { - - dataDirectory = dbResource.getServiceConfig().getDataDirectory(); - - dbResource.setCountryInConfig("12"); - - dbResource.openDataContext(); - - TuttiServiceContext serviceContext = dbResource.getServiceContext(); - - service = serviceContext.getService(TuttiExportService.class); - - } - - @Test - public void exportWithErrors() throws Exception { - - - TuttiServiceContext serviceContext = dbResource.getServiceContext(); - - PersistenceService persistenceService = serviceContext.getService(PersistenceService.class); - - // check there is a error while compute weight for a cruise - boolean errorDetected = false; - WeightComputingService computingService = serviceContext.getService(WeightComputingService.class); - List<String> allFishingOperation = persistenceService.getAllFishingOperationIds(CRUISE_ID); - for (String fishingOperation : allFishingOperation) { - try { - computingService.getComputedSpeciesBatches(fishingOperation); - } catch (Exception e) { - errorDetected = true; - break; - } - } - - Assert.assertTrue(errorDetected); - - File exportFile = new File(dataDirectory, "exportCruise.zip"); - - Files.createParentDirs(exportFile); - - Assert.assertFalse(exportFile.exists()); - - ProgressionModel progressionModel = new ProgressionModel(); - progressionModel.setTotal(9); - try { - service.exportCruise(CRUISE_ID, exportFile, progressionModel); - // got an error after but export was still performed - Assert.fail(); - } catch (TuttiBusinessException e) { - // got an error - Assert.assertTrue(true); - } - // export perform, file exist - Assert.assertTrue(exportFile.exists()); - - String urlPrefix = "jar:" + exportFile.toURI().toURL() + "!/exportCruise-" + CRUISE_ID + "/"; - { - // check species file content - - URL url = new URL(urlPrefix + "species.csv"); - ServiceDbResource.assertFileContent("species export:\n", - url, - "Id;Code_Rubin;Nom Scientifique;Code campagne\n" + - "380;ACANECH;Acanthocardia echinata;;\n" + - "1358;ALOSALO;Alosa alosa;;\n" + - "1938;AGONCAT;Agonus cataphractus;;\n" + - "4622;ABIEABI;Abietinaria abietina;;\n" + - "11183;;Brissopsis atlantica;;"); - - } - - { - // check accidentalCatch file content - - URL url = new URL(urlPrefix + "accidentalCatch.csv"); - ServiceDbResource.assertFileContent("accidentalCatch export:\n", - url, - "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;BatchId;ReferenceTaxonId;ReferenceTaxonName;Commentaire;CaracteristicId;CaracteristicValue"); - - } - - { - // check operation file content - - URL url = new URL(urlPrefix + "operation.csv"); - ServiceDbResource.assertFileContent("operation export:\n", - url, - "Annee;Serie;Serie_Partielle;Code_Station;Numero_Trait;Poche;Engin;Navire;DateDeb_Op;LatDeb;LongDeb;DateFin_Op;LatFin;LongFin;Duree;Strate;Sous-Strate;Localite;Validite_OP;Rectiligne;Distance;Ouv_Verticale;Ouv_Horizontale_Ailes;Ouv_Horizontale_Panneaux;Saisisseur;NavireAssocie;Commentaire;Poids_Total;Poids_Total_Calcule;Poids_Total_Vrac;Poids_Total_Vrac_Calcule;Poids_Total_HorsVrac;Poids_Total_HorsVrac_Calcule;Poids_Total_Non_Trie;Poids_Total_Non_Trie_Calcule;Poids_Total_Tremis;Poids_Total_Tremis_Calcule;Poids_Total_Carroussel;Poids_Total_Carroussel_Calcule;Poids_Total_Espece;Poids_Total_Espece_Calcule;Poids_Total_Espece_Vrac;Poids_Total_Espece_Vrac_Calcule;Poids_Total_Espece_Vrac_Trie;Poids_Total_Espece_Vrac_Trie_Calcule;Poids_Total_Espece_HorsVrac;Poids_Total_Espece_HorsVrac_Calcule;Poids_Total_Espece_Inerte_Trie;Poids_Total_Espece_Inerte_Trie_Calcule;Poids_Total_Espece_Vivant_non_detaille_trie;Poids_Total_Espece_Vivant_non_detaille_trie_Calcule;Poids_Total_Benthos;Poids_Total_Benthos_Calcule;Poids_Total_Benthos_Vrac;Poids_Total_Benthos_Vrac_Calcule;Poids_Total_Benthos_Vrac_Trie;Poids_Total_Benthos_Vrac_Trie_Calcule;Poids_Total_Benthos_HorsVrac;Poids_Total_Benthos_HorsVrac_Calcule;Poids_Total_Benthos_Inerte_Trie;Poids_Total_Benthos_Inerte_Trie_Calcule;Poids_Total_Benthos_Vivant_non_detaille_trie;Poids_Total_Benthos_Vivant_non_detaille_trie_Calcule;Poids_Total_Macro_Dechet;Poids_Total_Macro_Dechet_Calcule\n" + - "2013;test elevation;1;B;2;1;OTB 20/28.10;278970;01/07/2013 00:00:00;;;01/07/2013 00:00:00;;;00;NA;NA;NA;?;N;;NA;NA;NA;;;\"Commentaire sur le trait B-2-1\n" + - "\n" + - "avec\n" + - "saut\n" + - "de \n" + - "ligne\";1000.0;Y;280.0;Y;20.0;Y;700.0;N;;?;;?;200.0;Y;180.0;Y;180.0;Y;20.0;Y;0.0;Y;0.0;Y;100.0;Y;100.0;N;50.0;Y;0.0;Y;2.0;N;0.0;Y;100.0;N;\n" + - "2013;test elevation;1;A;1;1;OTB 20/28.10;278970;01/07/2013 00:00:00;;;01/07/2013 00:00:00;;;00;NA;NA;NA;?;N;;NA;NA;NA;;;\"commentaire trait A-1-1\n" + - "Avec \n" + - "saut\n" + - "de\n" + - "ligne\n" + - "...\";1000.0;Y;180.0;Y;20.0;Y;800.0;N;;?;;?;200.0;Y;180.0;Y;180.0;Y;20.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;\n" + - "2013;test elevation;1;C;3;1;;278970;25/09/2013 00:00:00;;;25/09/2013 00:00:00;;;00;NA;NA;NA;?;N;;NA;NA;NA;;;;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;"); - - } - - { - // check survey file content - - URL url = new URL(urlPrefix + "survey.csv"); - ServiceDbResource.assertFileContent("survey export:\n", - url, - "Annee;Serie;Serie_Partielle;Navire;Pays;Zone_Etude;Campagne;Id_Sismer;Date_Deb_Campagne;Port_Deb_Campagne;Date_Fin_Campagne;Port_Fin_Campagne;Chef_Mission;Resp_Salle_Tri;Commentaire\n" + - "2013;test elevation;1;278970;FRA;CGFS - Manche Est / Sud Mer du Nord;test elevation_2013_1;;01/07/2013 00:00:00;La Barbotière (Gujan-Mestras);04/07/2013 00:00:00;La Barbotière (Gujan-Mestras);Adrian LEVREL;Alain BISEAU;;"); - - } - - { - // check individualObservation file content - - URL url = new URL(urlPrefix + "individualObservation.csv"); - ServiceDbResource.assertFileContent("individualObservation export:\n", - url, - "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;BatchId;ReferenceTaxonId;ReferenceTaxonName;Commentaire;CaracteristicId;CaracteristicValue"); - - } - - { - // check catch file content - - URL url = new URL("jar:" + exportFile.toURI().toURL() + "!/exportCruise-" + CRUISE_ID + "/catch.csv"); - ServiceDbResource.assertFileContent("Catch export:\n", - url, - "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;Taxon;Nom_scientifique;Commentaire;V_HV;Num_Ordre_V_HV_H2;Tot_V_HV;Ech_V_HV;Type_Volume_Poids_V_HV;Unite_Volume_Poids_V_HV;Class_Tri_;Num_Ordre_Class_Tri__H2;Tot_Class_Tri_;Ech_Class_Tri_;Type_Volume_Poids_Class_Tri_;Unite_Volume_Poids_Class_Tri_;Sexe;Num_Ordre_Sexe_H2;Tot_Sexe;Ech_Sexe;Type_Volume_Poids_Sexe;Unite_Volume_Poids_Sexe;Maturité;Num_Ordre_Maturité_H2;Tot_Maturité;Ech_Maturité;Type_Volume_Poids_Maturité;Unite_Volume_Poids_Maturité;Age;Num_Ordre_Age_H2;Tot_Age;Ech_Age;Type_Volume_Poids_Age;Unite_Volume_Poids_Age;Code_Longueur;Libelle_Longueur;Taille;NumOrdre_Taille_H2;Poids_Classe_Taille;Unite_Taille;Precision_Mesure;Nbr;Poids_Reference;Coef_Elev_Espece_Capture\n" + - "2013;test elevation;1;OTB 20/28.10;B;2;1;278970;1938;Agonus cataphractus;Trait B-2-1 AGONCAT-vrac 80;Vrac;1;80.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;80.0;3.5;\n" + - "2013;test elevation;1;OTB 20/28.10;B;2;1;278970;1358;Alosa alosa;Trait B-2-1 ALOSALO Vrac|Trait B-2-1 ALOSALO Vrac - Male 60;Vrac;2;;;Poids;kg;NA;;;;;kg;Mâle;1;60.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;60.0;5.8333335;\n" + - "2013;test elevation;1;OTB 20/28.10;B;2;1;278970;1358;Alosa alosa;Trait B-2-1 ALOSALO Vrac|Trait B-2-1 ALOSALO Vrac - Femelle 40.0;Vrac;2;;;Poids;kg;NA;;;;;kg;Femelle;2;40.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;40.0;8.75;\n" + - "2013;test elevation;1;OTB 20/28.10;B;2;1;278970;1938;Agonus cataphractus;Trait B-2-1 AGONCAT-horsvrac 20;Hors Vrac;1;20.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;20.0;1.0;\n" + - "2013;test elevation;1;OTB 20/28.10;B;2;1;278970;4622;Abietinaria abietina;\"Trait B-2-1 Benthos ABIEABI Vrac 30\n" + - "\n" + - "avec \n" + - "\n" + - "commentaire...\";Vrac;1;30.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;30.0;7.0;\n" + - "2013;test elevation;1;OTB 20/28.10;B;2;1;278970;380;Acanthocardia echinata;\"Trait B-2-1 Benthos ACANECH Vrac 18\n" + - "\n" + - "avec \n" + - "\n" + - "commentaire...\";Vrac;2;18.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;18.0;7.0;\n" + - "2013;test elevation;1;OTB 20/28.10;A;1;1;278970;1938;Agonus cataphractus;AGONCAT-vrac-80;Vrac;1;80.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;80.0;5.4444447;\n" + - "2013;test elevation;1;OTB 20/28.10;A;1;1;278970;1358;Alosa alosa;ALOSALO-vrac|ALOSALO-vrac-male 60;Vrac;2;;;Poids;kg;NA;;;;;kg;Mâle;1;60.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;60.0;9.074075;\n" + - "2013;test elevation;1;OTB 20/28.10;A;1;1;278970;1358;Alosa alosa;ALOSALO-vrac|ALOSALO-vrac-femelle 40;Vrac;2;;;Poids;kg;NA;;;;;kg;Femelle;2;40.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;5.0;1;0.6;cm;1.0;4;0.6;907.4074;\n" + - "2013;test elevation;1;OTB 20/28.10;A;1;1;278970;1358;Alosa alosa;ALOSALO-vrac|ALOSALO-vrac-femelle 40;Vrac;2;;;Poids;kg;NA;;;;;kg;Femelle;2;40.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;6.0;2;0.4;cm;1.0;10;0.4;1361.1111;\n" + - "2013;test elevation;1;OTB 20/28.10;A;1;1;278970;1938;Agonus cataphractus;AGONCAT-horsvrac-20;Hors Vrac;1;20.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;20.0;1.0;\n" + - "2013;test elevation;1;;C;3;1;278970;11183;Brissopsis atlantica;|;Vrac;1;;;Poids;kg;NA;;;;;kg;UNK - Indéterminé;1;30.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;30.0;0.0;\n" + - "2013;test elevation;1;;C;3;1;278970;11183;Brissopsis atlantica;|;Vrac;1;;;Poids;kg;NA;;;;;kg;Mâle;2;20.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;20.0;0.0;\n" + - "2013;test elevation;1;;C;3;1;278970;11183;Brissopsis atlantica;|;Vrac;1;;;Poids;kg;NA;;;;;kg;Femelle;3;;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;;1.0;"); - - } - - { - // check gearCaracteristics file content - - URL url = new URL(urlPrefix + "gearCaracteristics.csv"); - ServiceDbResource.assertFileContent("gearCaracteristics export:\n", - url, - "Annee;Serie;Serie_Partielle;Engin;Code_PMFM;Libelle_PMFM;Valeur"); - - } - - { - // check marineLitter file content - - URL url = new URL(urlPrefix + "marineLitter.csv"); - ServiceDbResource.assertFileContent("marineLitter export:\n", - url, - "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;MarineLitterCategory;MarineLitterSizeCategory;Number;Weight;Commentaire\n" + - "2013;test elevation;1;OTB 20/28.10;B;2;1;278970;L1 PLASTIQUE;A: <5*5 cm= 25 cm2;10;;\"Trait B-2-1 Macro dechet L1 Plastique (nb 10)\n" + - "\n" + - "avec \n" + - "\n" + - "commentaire...\";"); - - } - { - // check parameter file content - - URL url = new URL(urlPrefix + "parameter.csv"); - ServiceDbResource.assertFileContent("parameter export:\n", - url, - "Annee;Serie;Serie_Partielle;Code_station;Numero_Trait;Poche;Code_PMFM;Libelle_PMFm;Valeur"); - - } - } -} Deleted: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/TuttiExportServiceTest.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/TuttiExportServiceTest.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/TuttiExportServiceTest.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,505 +0,0 @@ -package fr.ifremer.tutti.service.export; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import com.google.common.collect.Lists; -import com.google.common.io.Files; -import fr.ifremer.tutti.persistence.ProgressionModel; -import fr.ifremer.tutti.persistence.entities.TuttiEntities; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.service.PersistenceService; -import fr.ifremer.tutti.service.ServiceDbResource; -import fr.ifremer.tutti.service.TuttiServiceContext; -import org.junit.Assert; -import org.junit.Before; -import org.junit.ClassRule; -import org.junit.Ignore; -import org.junit.Test; - -import java.io.File; -import java.util.List; -import java.util.Map; - -/** - * @author tchemit <chemit@codelutin.com> - * @since 1.3 - */ -public class TuttiExportServiceTest { - - @ClassRule - public static final ServiceDbResource dbResource = - ServiceDbResource.readDb("dbCGFS"); - - public static final String PROGRAM_ID = "CAM-CGFS"; - - public static final String CRUISE_ID = "100001"; - - public static final String CRUISE_CGFS_ID = "100000"; - - public static final String OPERATION_1_ID = "100106"; - - public static final String OPERATION_2_ID = "100107"; - - public static final String SURVEY_CONTENT = - "Annee;Serie;Serie_Partielle;Navire;Pays;Zone_Etude;Campagne;Id_Sismer;Date_Deb_Campagne;Port_Deb_Campagne;Date_Fin_Campagne;Port_Fin_Campagne;Chef_Mission;Resp_Salle_Tri;Commentaire\n" + - "2013;Campagne CGFS;;278970;FRA;CGFS - Manche Est / Sud Mer du Nord;Campagne CGFS_2013;;01/05/2013 00:00:00;La Barbotière (Gujan-Mestras);31/05/2013 00:00:00;Etang de Palo;Vincent AURECHE;Alain TETARD;;"; - - public static final String GEAR_CARACTERISTICS_CONTENT = - "Annee;Serie;Serie_Partielle;Engin;Code_PMFM;Libelle_PMFM;Valeur\n" + - "2013;Campagne CGFS;;ScientificGear;289;Armature (drague) - engin - totale - Déclaration d'un professionnel;Lame;\n" + - "2013;Campagne CGFS;;ScientificGear;121;Diamètre du goulot (Casier) - engin - goulotte - Déclaration d'un professionnel;120.0;\n" + - "2013;Campagne CGFS;;ScientificGear;927;Maillage étiré de l'engin - engin - Maille des ailes - Inconnue;15.0;\n" + - "2013;Campagne CGFS;;ScientificGear;287;Volet dépresseur (drague) - engin - totale - Déclaration d'un professionnel;Oui;"; - - public static final String OPERATION_WITH_NO_CATCH_CONTENT = - "Annee;Serie;Serie_Partielle;Code_Station;Numero_Trait;Poche;Engin;Navire;DateDeb_Op;LatDeb;LongDeb;DateFin_Op;LatFin;LongFin;Duree;Strate;Sous-Strate;Localite;Validite_OP;Rectiligne;Distance;Ouv_Verticale;Ouv_Horizontale_Ailes;Ouv_Horizontale_Panneaux;Saisisseur;NavireAssocie;Commentaire;Poids_Total;Poids_Total_Calcule;Poids_Total_Vrac;Poids_Total_Vrac_Calcule;Poids_Total_HorsVrac;Poids_Total_HorsVrac_Calcule;Poids_Total_Non_Trie;Poids_Total_Non_Trie_Calcule;Poids_Total_Tremis;Poids_Total_Tremis_Calcule;Poids_Total_Carroussel;Poids_Total_Carroussel_Calcule;Poids_Total_Espece;Poids_Total_Espece_Calcule;Poids_Total_Espece_Vrac;Poids_Total_Espece_Vrac_Calcule;Poids_Total_Espece_Vrac_Trie;Poids_Total_Espece_Vrac_Trie_Calcule;Poids_Total_Espece_HorsVrac;Poids_Total_Espece_HorsVrac_Calcule;Poids_Total_Espece_Inerte_Trie;Poids_Total_Espece_Inerte_Trie_Calcule;Poids_Total_Espece_Vivant_non_detaille_trie;Poids_Total_Espece_Vivant_non_detaille_trie_Calcule;Poids_Total_Benthos;Poids_Total_Benthos_Calcule;Poids_Total_Benthos_Vrac;Poids_Total_Benthos_Vrac_Calcule;Poids_Total_Benthos_Vrac_Trie;Poids_Total_Benthos_Vrac_Trie_Calcule;Poids_Total_Benthos_HorsVrac;Poids_Total_Benthos_HorsVrac_Calcule;Poids_Total_Benthos_Inerte_Trie;Poids_Total_Benthos_Inerte_Trie_Calcule;Poids_Total_Benthos_Vivant_non_detaille_trie;Poids_Total_Benthos_Vivant_non_detaille_trie_Calcule;Poids_Total_Macro_Dechet;Poids_Total_Macro_Dechet_Calcule\n" + - "2010;Campagne CGFS;;65;65;1;GOV 19.7/25.9;278970;13/10/2010 13:35:00;50.22833;0.31833;13/10/2010 14:05:00;50.22167;0.28333;30;Strate 4J;NA;Localité 4J2;N;Y;2512.0;NA;NA;NA;;;avarie - chalut annulé completement à poil;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;"; - - public static final String OPERATION_WITH_NO_CATCH_CONTENT_AND_NO_GEAR = - "Annee;Serie;Serie_Partielle;Code_Station;Numero_Trait;Poche;Engin;Navire;DateDeb_Op;LatDeb;LongDeb;DateFin_Op;LatFin;LongFin;Duree;Strate;Sous-Strate;Localite;Validite_OP;Rectiligne;Distance;Ouv_Verticale;Ouv_Horizontale_Ailes;Ouv_Horizontale_Panneaux;Saisisseur;NavireAssocie;Commentaire;Poids_Total;Poids_Total_Calcule;Poids_Total_Vrac;Poids_Total_Vrac_Calcule;Poids_Total_HorsVrac;Poids_Total_HorsVrac_Calcule;Poids_Total_Non_Trie;Poids_Total_Non_Trie_Calcule;Poids_Total_Tremis;Poids_Total_Tremis_Calcule;Poids_Total_Carroussel;Poids_Total_Carroussel_Calcule;Poids_Total_Espece;Poids_Total_Espece_Calcule;Poids_Total_Espece_Vrac;Poids_Total_Espece_Vrac_Calcule;Poids_Total_Espece_Vrac_Trie;Poids_Total_Espece_Vrac_Trie_Calcule;Poids_Total_Espece_HorsVrac;Poids_Total_Espece_HorsVrac_Calcule;Poids_Total_Espece_Inerte_Trie;Poids_Total_Espece_Inerte_Trie_Calcule;Poids_Total_Espece_Vivant_non_detaille_trie;Poids_Total_Espece_Vivant_non_detaille_trie_Calcule;Poids_Total_Benthos;Poids_Total_Benthos_Calcule;Poids_Total_Benthos_Vrac;Poids_Total_Benthos_Vrac_Calcule;Poids_Total_Benthos_Vrac_Trie;Poids_Total_Benthos_Vrac_Trie_Calcule;Poids_Total_Benthos_HorsVrac;Poids_Total_Benthos_HorsVrac_Calcule;Poids_Total_Benthos_Inerte_Trie;Poids_Total_Benthos_Inerte_Trie_Calcule;Poids_Total_Benthos_Vivant_non_detaille_trie;Poids_Total_Benthos_Vivant_non_detaille_trie_Calcule;Poids_Total_Macro_Dechet;Poids_Total_Macro_Dechet_Calcule\n" + - "2010;Campagne CGFS;;65;65;1;;278970;13/10/2010 13:35:00;50.22833;0.31833;13/10/2010 14:05:00;50.22167;0.28333;30;Strate 4J;NA;Localité 4J2;N;Y;2512.0;NA;NA;NA;;;avarie - chalut annulé completement à poil;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;"; - - public static final String OPERATION_CONTENT = - "Annee;Serie;Serie_Partielle;Code_Station;Numero_Trait;Poche;Engin;Navire;DateDeb_Op;LatDeb;LongDeb;DateFin_Op;LatFin;LongFin;Duree;Strate;Sous-Strate;Localite;Validite_OP;Rectiligne;Distance;Ouv_Verticale;Ouv_Horizontale_Ailes;Ouv_Horizontale_Panneaux;Saisisseur;NavireAssocie;Commentaire;Poids_Total;Poids_Total_Calcule;Poids_Total_Vrac;Poids_Total_Vrac_Calcule;Poids_Total_HorsVrac;Poids_Total_HorsVrac_Calcule;Poids_Total_Non_Trie;Poids_Total_Non_Trie_Calcule;Poids_Total_Tremis;Poids_Total_Tremis_Calcule;Poids_Total_Carroussel;Poids_Total_Carroussel_Calcule;Poids_Total_Espece;Poids_Total_Espece_Calcule;Poids_Total_Espece_Vrac;Poids_Total_Espece_Vrac_Calcule;Poids_Total_Espece_Vrac_Trie;Poids_Total_Espece_Vrac_Trie_Calcule;Poids_Total_Espece_HorsVrac;Poids_Total_Espece_HorsVrac_Calcule;Poids_Total_Espece_Inerte_Trie;Poids_Total_Espece_Inerte_Trie_Calcule;Poids_Total_Espece_Vivant_non_detaille_trie;Poids_Total_Espece_Vivant_non_detaille_trie_Calcule;Poids_Total_Benthos;Poids_Total_Benthos_Calcule;Poids_Total_Benthos_Vrac;Poids_Total_Benthos_Vrac_Calcule;Poids_Total_Benthos_Vrac_Trie;Poids_Total_Benthos_Vrac_Trie_Calcule;Poids_Total_Benthos_HorsVrac;Poids_Total_Benthos_HorsVrac_Calcule;Poids_Total_Benthos_Inerte_Trie;Poids_Total_Benthos_Inerte_Trie_Calcule;Poids_Total_Benthos_Vivant_non_detaille_trie;Poids_Total_Benthos_Vivant_non_detaille_trie_Calcule;Poids_Total_Macro_Dechet;Poids_Total_Macro_Dechet_Calcule\n" + - "2013;Campagne CGFS;;A;1;1;GOV 19.7/25.9;278970;01/05/2013 00:00:00;;;01/05/2013 00:23:00;;;23;Strate 1D;NA;Localité 1D2;?;N;;NA;NA;NA;Vincent AURECHE;;op1;120.0;Y;100.0;Y;20.0;Y;0.0;Y;;?;;?;120.0;Y;100.0;Y;100.0;Y;20.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;6.0;Y;\n" + - "2013;Campagne CGFS;;A;2;1;GOV 19.7/25.9;278970;11/05/2013 08:00:00;;;11/05/2013 08:23:00;;;23;Strate 1D;NA;Localité 1D2;?;N;;NA;NA;NA;Robert BELLAIL|Herve BARONE;;OP2;0.0;Y;0.0;Y;0.0;Y;0.0;Y;;?;;?;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;"; - - public static final String PARAMETER_CONTENT = - "Annee;Serie;Serie_Partielle;Code_station;Numero_Trait;Poche;Code_PMFM;Libelle_PMFm;Valeur\n" + - "2013;Campagne CGFS;;A;1;1;1164;Catégorie UE - produit/lot - totale - Diffusion par une Halle à marée;Cat UE10;\n" + - "2013;Campagne CGFS;;A;1;1;1302;(Gross Tonnage) : augmentation de tonnage accordée pour des raisons de sécurité - navire - totale - Déclaration d'un professionnel;10.0;\n" + - "2013;Campagne CGFS;;A;1;1;194;\"Etat de la mer - masse d'eau, eau brute - totale - Observation par un observateur\";\"2 - belle, vagues de 0.1 à 0.5 mètres\";\n" + - "2013;Campagne CGFS;;A;1;1;821;Direction vent - air - totale - Instrument de bord;0.1;\n" + - "2013;Campagne CGFS;;A;1;1;149;Coût de la glace - navire - totale - Déclaration d'un professionnel;10.0;\n" + - "2013;Campagne CGFS;;A;2;1;1062;Catégorie de fraicheur - produit/lot - totale - Diffusion par une Halle à marée;A - Catégorie A;\n" + - "2013;Campagne CGFS;;A;2;1;308;Nombre d'engin - engin - totale - Déclaration d'un professionnel;2.0;"; - - public static final String CATCH_CONTENT = - "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;Taxon;Nom_scientifique;Commentaire;V_HV;Num_Ordre_V_HV_H2;Tot_V_HV;Ech_V_HV;Type_Volume_Poids_V_HV;Unite_Volume_Poids_V_HV;Class_Tri_;Num_Ordre_Class_Tri__H2;Tot_Class_Tri_;Ech_Class_Tri_;Type_Volume_Poids_Class_Tri_;Unite_Volume_Poids_Class_Tri_;Sexe;Num_Ordre_Sexe_H2;Tot_Sexe;Ech_Sexe;Type_Volume_Poids_Sexe;Unite_Volume_Poids_Sexe;Maturité;Num_Ordre_Maturité_H2;Tot_Maturité;Ech_Maturité;Type_Volume_Poids_Maturité;Unite_Volume_Poids_Maturité;Age;Num_Ordre_Age_H2;Tot_Age;Ech_Age;Type_Volume_Poids_Age;Unite_Volume_Poids_Age;Code_Longueur;Libelle_Longueur;Taille;NumOrdre_Taille_H2;Poids_Classe_Taille;Unite_Taille;Precision_Mesure;Nbr;Poids_Reference;Coef_Elev_Espece_Capture\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;|||;Vrac;1;100.0;;Poids;kg;G - Gros;1;80.0;;Poids;kg;Mâle;1;30.0;;Poids;kg;1 - Stade 1;1;10.0;5.0;Poids;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;10.0;1;;cm;0.5;5;5.0;20.0;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;|||;Vrac;1;100.0;;Poids;kg;G - Gros;1;80.0;;Poids;kg;Mâle;1;30.0;;Poids;kg;1 - Stade 1;1;10.0;5.0;Poids;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;10.5;2;;cm;0.5;2;5.0;20.0;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;|||;Vrac;1;100.0;;Poids;kg;G - Gros;1;80.0;;Poids;kg;Mâle;1;30.0;;Poids;kg;1 - Stade 1;1;10.0;5.0;Poids;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;11.0;3;;cm;0.5;1;5.0;20.0;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;|||;Vrac;1;100.0;;Poids;kg;G - Gros;1;80.0;;Poids;kg;Mâle;1;30.0;;Poids;kg;3 - Stade 3;3;10.0;;Poids;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;11.0;1;;cm;0.5;5;10.0;10.0;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;||;Vrac;1;100.0;;Poids;kg;G - Gros;1;80.0;;Poids;kg;Femelle;2;50.0;30.0;Poids;kg;3 - Stade 3;3;10.0;;Poids;kg;NA;;;;;kg;1425;Longueur totale (LT) - individu - queue - Mesure au cm par un observateur;10.0;1;;cm;;5;30.0;3.3333333;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;||;Vrac;1;100.0;;Poids;kg;G - Gros;1;80.0;;Poids;kg;Femelle;2;50.0;30.0;Poids;kg;3 - Stade 3;3;10.0;;Poids;kg;NA;;;;;kg;1425;Longueur totale (LT) - individu - queue - Mesure au cm par un observateur;11.0;2;;cm;;6;30.0;3.3333333;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;||;Vrac;1;100.0;;Poids;kg;G - Gros;1;80.0;;Poids;kg;Femelle;2;50.0;30.0;Poids;kg;3 - Stade 3;3;10.0;;Poids;kg;NA;;;;;kg;1425;Longueur totale (LT) - individu - queue - Mesure au cm par un observateur;12.0;3;;cm;;7;30.0;3.3333333;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;|;Vrac;1;100.0;;Poids;kg;M - Moyen;2;20.0;;Poids;kg;Femelle;2;50.0;30.0;Poids;kg;3 - Stade 3;3;10.0;;Poids;kg;NA;;;;;kg;;;;;;;;;20.0;5.0;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;;Hors Vrac;1;20.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;2;20.0;1.0;"; - - public static final String CATCH_CONTENT_2 = - "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;Taxon;Nom_scientifique;Commentaire;V_HV;Num_Ordre_V_HV_H2;Tot_V_HV;Ech_V_HV;Type_Volume_Poids_V_HV;Unite_Volume_Poids_V_HV;Class_Tri_;Num_Ordre_Class_Tri__H2;Tot_Class_Tri_;Ech_Class_Tri_;Type_Volume_Poids_Class_Tri_;Unite_Volume_Poids_Class_Tri_;Sexe;Num_Ordre_Sexe_H2;Tot_Sexe;Ech_Sexe;Type_Volume_Poids_Sexe;Unite_Volume_Poids_Sexe;Maturité;Num_Ordre_Maturité_H2;Tot_Maturité;Ech_Maturité;Type_Volume_Poids_Maturité;Unite_Volume_Poids_Maturité;Age;Num_Ordre_Age_H2;Tot_Age;Ech_Age;Type_Volume_Poids_Age;Unite_Volume_Poids_Age;Code_Longueur;Libelle_Longueur;Taille;NumOrdre_Taille_H2;Poids_Classe_Taille;Unite_Taille;Precision_Mesure;Nbr;Poids_Reference;Coef_Elev_Espece_Capture\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;365;Aequipecten opercularis;taxon;Vrac;1;0.005;0.005;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.005;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;491;Alloteuthis;taxon;Vrac;2;0.004;0.004;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.004;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;300;Buccinum undatum;taxon;Vrac;3;0.015;0.015;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.015;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1811;Callionymus lyra;taxon;Vrac;4;0.07;0.07;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.07;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1644;Dicentrarchus labrax;taxon;Vrac;5;1.06;1.06;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;36.0;1;;cm;1.0;1;1.06;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1644;Dicentrarchus labrax;taxon;Vrac;5;1.06;1.06;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;38.0;2;;cm;1.0;1;1.06;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1362;Engraulis encrasicolus;taxon;Vrac;6;0.038;0.038;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;10.5;1;;cm;0.5;2;0.038;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1362;Engraulis encrasicolus;taxon;Vrac;6;0.038;0.038;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;12.5;2;;cm;0.5;1;0.038;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1362;Engraulis encrasicolus;taxon;Vrac;6;0.038;0.038;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;13.0;3;;cm;0.5;1;0.038;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1986;Limanda limanda;taxon;Vrac;7;0.66;0.66;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;25.0;1;;cm;1.0;1;0.66;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1986;Limanda limanda;taxon;Vrac;7;0.66;0.66;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;28.0;2;;cm;1.0;1;0.66;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1986;Limanda limanda;taxon;Vrac;7;0.66;0.66;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;30.0;3;;cm;1.0;1;0.66;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;489;Loligo vulgaris;taxon;Vrac;8;0.28;0.28;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;302;Longueur du manteau (LM) - individu - manteau - Mesure au cm par un observateur;9.0;1;;cm;1.0;1;0.28;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;489;Loligo vulgaris;taxon;Vrac;8;0.28;0.28;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;302;Longueur du manteau (LM) - individu - manteau - Mesure au cm par un observateur;10.0;2;;cm;1.0;3;0.28;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;489;Loligo vulgaris;taxon;Vrac;8;0.28;0.28;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;302;Longueur du manteau (LM) - individu - manteau - Mesure au cm par un observateur;11.0;3;;cm;1.0;2;0.28;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1988;Microstomus kitt;taxon;Vrac;9;0.152;0.152;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;15.0;1;;cm;1.0;1;0.152;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1988;Microstomus kitt;taxon;Vrac;9;0.152;0.152;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;18.0;2;;cm;1.0;1;0.152;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1690;Mullus surmuletus;taxon;Vrac;10;0.036;0.036;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;11.0;1;;cm;1.0;1;0.036;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1978;Pleuronectes platessa;taxon;Vrac;11;0.852;0.852;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;26.0;1;;cm;1.0;1;0.852;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1978;Pleuronectes platessa;taxon;Vrac;11;0.852;0.852;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;30.0;2;;cm;1.0;1;0.852;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1351;Sardina pilchardus;taxon;Vrac;12;0.022;0.022;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;10.5;1;;cm;0.5;1;0.022;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1772;Scomber scombrus;taxon;Vrac;13;0.18;0.18;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;27.0;1;;cm;1.0;1;0.18;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1242;Scyliorhinus canicula;taxon|categorie_individu;Vrac;14;;;Poids;kg;NA;;;;;kg;Femelle;1;1.0;1.0;Poids;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;51.0;1;;cm;1.0;1;1.0;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1242;Scyliorhinus canicula;taxon|categorie_individu;Vrac;14;;;Poids;kg;NA;;;;;kg;Femelle;1;1.0;1.0;Poids;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;55.0;2;;cm;1.0;1;1.0;1.0;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1662;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;8.0;1;;cm;1.0;1;0.96;136.71875;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1662;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;9.0;2;;cm;1.0;20;0.96;136.71875;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1662;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;10.0;3;;cm;1.0;89;0.96;136.71875;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1662;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;11.0;4;;cm;1.0;5;0.96;136.71875;\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1662;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;G - Gros;2;0.13;0.13;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;23.0;1;;cm;1.0;1;0.13;1009.6154;"; - - public static final String MARINE_LITTER_CONTENT = - "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;MarineLitterCategory;MarineLitterSizeCategory;Number;Weight;Commentaire\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;L1 PLASTIQUE;A: <5*5 cm= 25 cm2;2;5.0;S1;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;L1a Sacs;B: <10*10 cm= 100 cm2;3;1.0;S2;"; - - public static final String INDIVIDUAL_OBSERVATION_CONTENT = - "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;BatchId;ReferenceTaxonId;ReferenceTaxonName;Commentaire;CaracteristicId;CaracteristicValue\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;220;0.1;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;1433;307;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;307;10.0;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;1436;10;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;1435;A20;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;101;10.0;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;46;0L - 0 VMS - 1 LB;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;1388;5.0;"; - - public static final String ACCIDENTAL_CATCH_CONTENT = - "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;BatchId;ReferenceTaxonId;ReferenceTaxonName;Commentaire;CaracteristicId;CaracteristicValue\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100001;3835;Abalistes;;1393;Rejet mort;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100001;3835;Abalistes;;196;Femelle;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100001;3835;Abalistes;;220;10.0;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100001;3835;Abalistes;;1433;1425;\n" + - "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100001;3835;Abalistes;;1425;4.0;"; - - public static final String SPECIES_CONTENT = - "Id;Code_Rubin;Nom Scientifique;Code campagne\n" + - "3835;ABAL;Abalistes;;\n" + - "11242;AAPT;Aaptos;;\n" + - "11243;AAPTAAP;Aaptos aaptos;;"; - - public static final String SPECIES_CONTENT_2 = - "Id;Code_Rubin;Nom Scientifique;Code campagne\n" + - "300;BUCCUND;Buccinum undatum;;\n" + - "365;AEQUOPE;Aequipecten opercularis;;\n" + - "489;LOLIVUL;Loligo vulgaris;LOLIVUL;\n" + - "491;ALLO;Alloteuthis;ALLOSPP;\n" + - "1242;SCYOCAN;Scyliorhinus canicula;SCYOCAN;\n" + - "1351;SARDPIL;Sardina pilchardus;SARDPIL;\n" + - "1362;ENGRENC;Engraulis encrasicolus;ENGRENC;\n" + - "1644;DICELAB;Dicentrarchus labrax;DICELAB;\n" + - "1662;TRACTRA;Trachurus trachurus;TRACTRA;\n" + - "1690;MULLSUR;Mullus surmuletus;MULLSUR;\n" + - "1772;SCOMSCO;Scomber scombrus;SCOMSCO;\n" + - "1811;CALMLYR;Callionymus lyra;CALMLYR;\n" + - "1978;PLEUPLA;Pleuronectes platessa;;\n" + - "1986;LIMDLIM;Limanda limanda;;\n" + - "1988;MICTKIT;Microstomus kitt;;"; - - public static final int NB_EXPECTED_CGFS_OPERATIONS = 106; - - protected TuttiExportService service; - - protected PersistenceService persistenceService; - - protected ServiceDbResource.DataContext dataContext; - - protected ProgressionModel progressionModel; - - protected File dataDirectory; - - @Before - public void setUp() throws Exception { - - dataDirectory = dbResource.getServiceConfig().getDataDirectory(); - - TuttiServiceContext serviceContext = dbResource.getServiceContext(); - - persistenceService = serviceContext.getService(PersistenceService.class); - - dbResource.setCountryInConfig("12"); - dbResource.openDataContext(); - - service = serviceContext.getService(TuttiExportService.class); - - dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 2, OPERATION_1_ID, OPERATION_2_ID); - - progressionModel = new ProgressionModel(); - progressionModel.setTotal(9); - } - - @Ignore - @Test - public void exportProgram() throws Exception { - - File exportFile = new File(dataDirectory, "exportProgram.zip"); - - Files.createParentDirs(exportFile); - - Assert.assertFalse(exportFile.exists()); - - service.exportProgram(dataContext.program.getId(), exportFile, progressionModel); - Assert.assertTrue(exportFile.exists()); - } - - @Test - public void exportCruise() throws Exception { - - File exportFile = new File(dataDirectory, "exportCruise.zip"); - - Files.createParentDirs(exportFile); - - Assert.assertFalse(exportFile.exists()); - - service.exportCruise(dataContext.cruise.getId(), exportFile, progressionModel); - Assert.assertTrue(exportFile.exists()); - } - - @Test - public void exportSurvey() throws Exception { - - TuttiExportService.ExportContext exportContext = - service.createExportContext(dataDirectory); - - try { - service.exportSurvey(exportContext, dataContext.cruise); - } finally { - exportContext.close(); - } - ServiceDbResource.assertFileContent("Survey export:\n", - exportContext.surveyFile, - SURVEY_CONTENT); - } - - @Test - public void exportGearCaracteristics() throws Exception { - - TuttiExportService.ExportContext exportContext = - service.createExportContext(dataDirectory); - - try { - service.exportGearCaracteristics(exportContext, dataContext.cruise); - } finally { - exportContext.close(); - } - ServiceDbResource.assertFileContent("Gear caracteristics export:\n", - exportContext.gearCaracteristicsFile, - GEAR_CARACTERISTICS_CONTENT); - } - - @Test - public void exportOperations() throws Exception { - -// loadData(PROGRAM_ID, CRUISE_CGFS_ID); - - TuttiExportService.ExportContext exportContext = - service.createExportContext(dataDirectory); - - try { - service.exportOperations(exportContext, dataContext.cruise, dataContext.operations); - } finally { - exportContext.close(); - } - ServiceDbResource.assertFileContent("Operation export:\n", - exportContext.operationFile, - OPERATION_CONTENT); - } - - @Test - public void exportOperationsWithNoCatches() throws Exception { - - dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_CGFS_ID, NB_EXPECTED_CGFS_OPERATIONS); - - FishingOperation operation = TuttiEntities.findById(dataContext.operations, "100105"); - dataContext.operations = Lists.newArrayList(operation); - - TuttiExportService.ExportContext exportContext = - service.createExportContext(dataDirectory); - - try { - service.exportOperations(exportContext, dataContext.cruise, dataContext.operations); - } finally { - exportContext.close(); - } - - ServiceDbResource.assertFileContent("Operation export:\n", - exportContext.operationFile, - OPERATION_WITH_NO_CATCH_CONTENT); - } - - @Test - public void exportOperationsWithNoGear() throws Exception { - - dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_CGFS_ID, NB_EXPECTED_CGFS_OPERATIONS); - - FishingOperation operation = TuttiEntities.findById(dataContext.operations, "100105"); - operation.setGear(null); - dataContext.operations = Lists.newArrayList(operation); - - TuttiExportService.ExportContext exportContext = - service.createExportContext(dataDirectory); - - try { - service.exportOperations(exportContext, dataContext.cruise, dataContext.operations); - } finally { - exportContext.close(); - } - - ServiceDbResource.assertFileContent("Operation export:\n", - exportContext.operationFile, - OPERATION_WITH_NO_CATCH_CONTENT_AND_NO_GEAR); - } - - @Test - public void exportParameters() throws Exception { - - TuttiExportService.ExportContext exportContext = - service.createExportContext(dataDirectory); - - try { - service.exportParameters(exportContext, dataContext.cruise, dataContext.operations); - } finally { - exportContext.close(); - } - ServiceDbResource.assertFileContent("Parameter export:\n", - exportContext.parameterFile, - PARAMETER_CONTENT); - } - - @Test - public void exportCatches() throws Exception { - - TuttiExportService.ExportContext exportContext = - service.createExportContext(dataDirectory); - - try { - service.exportCatches(exportContext, dataContext.cruise, dataContext.operations); - } finally { - exportContext.close(); - } - ServiceDbResource.assertFileContent("Catch export:\n", - exportContext.catchFile, - CATCH_CONTENT); - } - - // To fix http://forge.codelutin.com/issues/2692 - @Test - public void exportCatchesAndSpecies() throws Exception { - - File protocolFile = new File("src/test/resources/tuttiProtocol.tuttiProtocol"); - - TuttiProtocol protocol = dbResource.loadProtocol(protocolFile); - - persistenceService.setProtocol(protocol); - - dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_CGFS_ID, NB_EXPECTED_CGFS_OPERATIONS); - - FishingOperation operation = TuttiEntities.findById(dataContext.operations, "100000"); - dataContext.operations = Lists.newArrayList(operation); - - TuttiExportService.ExportContext exportContext = - service.createExportContext(dataDirectory); - - try { - service.exportCatches(exportContext, dataContext.cruise, dataContext.operations); - service.exportSpecies(exportContext, exportContext.getSpeciesToExport()); - } finally { - exportContext.close(); - } - - ServiceDbResource.assertFileContent("species export:\n", - exportContext.speciesFile, - SPECIES_CONTENT_2); - - ServiceDbResource.assertFileContent("Catch export:\n", - exportContext.catchFile, - CATCH_CONTENT_2); - - - } - - // To fix http://forge.codelutin.com/issues/2523 - @Test - public void exportBadCatches() throws Exception { - - dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_CGFS_ID, NB_EXPECTED_CGFS_OPERATIONS); - - TuttiExportService.ExportContext exportContext = - service.createExportContext(dataDirectory); - - try { - service.exportCatches(exportContext, dataContext.cruise, dataContext.operations); - } finally { - exportContext.close(); - } - } - - @Test - public void exportMarineLitters() throws Exception { - - TuttiExportService.ExportContext exportContext = - service.createExportContext(dataDirectory); - - try { - service.exportMarineLitters(exportContext, dataContext.cruise, dataContext.operations); - } finally { - exportContext.close(); - } - ServiceDbResource.assertFileContent("MarineLitter export:\n", - exportContext.marineLitterFile, - MARINE_LITTER_CONTENT); - } - - @Test - public void exportIndividualObservations() throws Exception { - - TuttiExportService.ExportContext exportContext = - service.createExportContext(dataDirectory); - - try { - service.exportIndividualObservations(exportContext, dataContext.cruise, dataContext.operations); - } finally { - exportContext.close(); - } - ServiceDbResource.assertFileContent("individualObservation export:\n", - exportContext.individualObservationFile, - INDIVIDUAL_OBSERVATION_CONTENT); - } - - @Test - public void exportAccidentalCatch() throws Exception { - - TuttiExportService.ExportContext exportContext = - service.createExportContext(dataDirectory); - - try { - service.exportAccidentalCatch(exportContext, dataContext.cruise, dataContext.operations); - } finally { - exportContext.close(); - } - ServiceDbResource.assertFileContent("accidentalCatch export:\n", - exportContext.accidentalCatchFile, - ACCIDENTAL_CATCH_CONTENT); - } - - @Test - public void exportSpecies() throws Exception { - - TuttiExportService.ExportContext exportContext = - service.createExportContext(dataDirectory); - - try { - List<Species> allReferentSpecies = - persistenceService.getAllReferentSpecies(); - - Map<String, Species> allReferentSpeciesById = - TuttiEntities.splitById(allReferentSpecies); - exportContext.addSpecies(allReferentSpeciesById.get("35883")); - exportContext.addSpecies(allReferentSpeciesById.get("35884")); - exportContext.addSpecies(allReferentSpeciesById.get("19279")); - - service.exportSpecies(exportContext, - exportContext.getSpeciesToExport()); - } finally { - exportContext.close(); - } - ServiceDbResource.assertFileContent("species export:\n", - exportContext.speciesFile, - SPECIES_CONTENT); - } - -} Copied: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportService2Test.java (from rev 1361, trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/TuttiExportService2Test.java) =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportService2Test.java (rev 0) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportService2Test.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,265 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.io.Files; +import fr.ifremer.tutti.TuttiBusinessException; +import fr.ifremer.tutti.persistence.ProgressionModel; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.ServiceDbResource; +import fr.ifremer.tutti.service.TuttiServiceContext; +import fr.ifremer.tutti.service.catches.WeightComputingService; +import fr.ifremer.tutti.service.export.generic.TuttiExportService; +import org.junit.Assert; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Test; + +import java.io.File; +import java.net.URL; +import java.util.List; + +/** + * Test export of catches. + * + * @author tchemit <chemit@codelutin.com> + * @since 2.3.2 + */ +public class TuttiExportService2Test { + + @ClassRule + public static final ServiceDbResource dbResource = + ServiceDbResource.readDb("dbExport"); + + public static final String PROGRAM_ID = "CAM-TEST_ELEVATION"; + + public static final String CRUISE_ID = "100003"; + + public static final String OPERATION_1_ID = "100112"; + + public static final String OPERATION_2_ID = "100113"; + + public static final String OPERATION_3_ID = "100114"; + + protected TuttiExportService service; + + protected ServiceDbResource.DataContext dataContext; + + protected File dataDirectory; + + @Before + public void setUp() throws Exception { + + dataDirectory = dbResource.getServiceConfig().getDataDirectory(); + + dbResource.setCountryInConfig("12"); + + dbResource.openDataContext(); + + TuttiServiceContext serviceContext = dbResource.getServiceContext(); + + service = serviceContext.getService(TuttiExportService.class); + + } + + @Test + public void exportWithErrors() throws Exception { + + + TuttiServiceContext serviceContext = dbResource.getServiceContext(); + + PersistenceService persistenceService = serviceContext.getService(PersistenceService.class); + + // check there is a error while compute weight for a cruise + boolean errorDetected = false; + WeightComputingService computingService = serviceContext.getService(WeightComputingService.class); + List<String> allFishingOperation = persistenceService.getAllFishingOperationIds(CRUISE_ID); + for (String fishingOperation : allFishingOperation) { + try { + computingService.getComputedSpeciesBatches(fishingOperation); + } catch (Exception e) { + errorDetected = true; + break; + } + } + + Assert.assertTrue(errorDetected); + + File exportFile = new File(dataDirectory, "exportCruise.zip"); + + Files.createParentDirs(exportFile); + + Assert.assertFalse(exportFile.exists()); + + ProgressionModel progressionModel = new ProgressionModel(); + progressionModel.setTotal(9); + try { + service.exportCruise(CRUISE_ID, exportFile, progressionModel); + // got an error after but export was still performed + Assert.fail(); + } catch (TuttiBusinessException e) { + // got an error + Assert.assertTrue(true); + } + // export perform, file exist + Assert.assertTrue(exportFile.exists()); + + String urlPrefix = "jar:" + exportFile.toURI().toURL() + "!/exportCruise-" + CRUISE_ID + "/"; + { + // check species file content + + URL url = new URL(urlPrefix + "species.csv"); + ServiceDbResource.assertFileContent("species export:\n", + url, + "Id;Code_Rubin;Nom Scientifique;Code campagne\n" + + "380;ACANECH;Acanthocardia echinata;;\n" + + "1358;ALOSALO;Alosa alosa;;\n" + + "1938;AGONCAT;Agonus cataphractus;;\n" + + "4622;ABIEABI;Abietinaria abietina;;\n" + + "11183;;Brissopsis atlantica;;"); + + } + + { + // check accidentalCatch file content + + URL url = new URL(urlPrefix + "accidentalCatch.csv"); + ServiceDbResource.assertFileContent("accidentalCatch export:\n", + url, + "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;BatchId;ReferenceTaxonId;ReferenceTaxonName;Commentaire;CaracteristicId;CaracteristicValue"); + + } + + { + // check operation file content + + URL url = new URL(urlPrefix + "operation.csv"); + ServiceDbResource.assertFileContent("operation export:\n", + url, + "Annee;Serie;Serie_Partielle;Code_Station;Numero_Trait;Poche;Engin;Navire;DateDeb_Op;LatDeb;LongDeb;DateFin_Op;LatFin;LongFin;Duree;Strate;Sous-Strate;Localite;Validite_OP;Rectiligne;Distance;Ouv_Verticale;Ouv_Horizontale_Ailes;Ouv_Horizontale_Panneaux;Saisisseur;NavireAssocie;Commentaire;Poids_Total;Poids_Total_Calcule;Poids_Total_Vrac;Poids_Total_Vrac_Calcule;Poids_Total_HorsVrac;Poids_Total_HorsVrac_Calcule;Poids_Total_Non_Trie;Poids_Total_Non_Trie_Calcule;Poids_Total_Tremis;Poids_Total_Tremis_Calcule;Poids_Total_Carroussel;Poids_Total_Carroussel_Calcule;Poids_Total_Espece;Poids_Total_Espece_Calcule;Poids_Total_Espece_Vrac;Poids_Total_Espece_Vrac_Calcule;Poids_Total_Espece_Vrac_Trie;Poids_Total_Espece_Vrac_Trie_Calcule;Poids_Total_Espece_HorsVrac;Poids_Total_Espece_HorsVrac_Calcule;Poids_Total_Espece_Inerte_Trie;Poids_Total_Espece_Inerte_Trie_Calcule;Poids_Total_Espece_Vivant_non_detaille_trie;Poids_Total_Espece_Vivant_non_detaille_trie_Calcule;Poids_Total_Benthos;Poids_Total_Benthos_Calcule;Poids_Total_Benthos_Vrac;Poids_Total_Benthos_Vrac_Calcule;Poids_Total_Benthos_Vrac_Trie;Poids_Total_Benthos_Vrac_Trie_Calcule;Poids_Total_Benthos_HorsVrac;Poids_Total_Benthos_HorsVrac_Calcule;Poids_Total_Benthos_Inerte_Trie;Poids_Total_Benthos_Inerte_Trie_Calcule;Poids_Total_Benthos_Vivant_non_detaille_trie;Poids_Total_Benthos_Vivant_non_detaille_trie_Calcule;Poids_Total_Macro_Dechet;Poids_Total_Macro_Dechet_Calcule\n" + + "2013;test elevation;1;B;2;1;OTB 20/28.10;278970;01/07/2013 00:00:00;;;01/07/2013 00:00:00;;;00;NA;NA;NA;?;N;;NA;NA;NA;;;\"Commentaire sur le trait B-2-1\n" + + "\n" + + "avec\n" + + "saut\n" + + "de \n" + + "ligne\";1000.0;Y;280.0;Y;20.0;Y;700.0;N;;?;;?;200.0;Y;180.0;Y;180.0;Y;20.0;Y;0.0;Y;0.0;Y;100.0;Y;100.0;N;50.0;Y;0.0;Y;2.0;N;0.0;Y;100.0;N;\n" + + "2013;test elevation;1;A;1;1;OTB 20/28.10;278970;01/07/2013 00:00:00;;;01/07/2013 00:00:00;;;00;NA;NA;NA;?;N;;NA;NA;NA;;;\"commentaire trait A-1-1\n" + + "Avec \n" + + "saut\n" + + "de\n" + + "ligne\n" + + "...\";1000.0;Y;180.0;Y;20.0;Y;800.0;N;;?;;?;200.0;Y;180.0;Y;180.0;Y;20.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;\n" + + "2013;test elevation;1;C;3;1;;278970;25/09/2013 00:00:00;;;25/09/2013 00:00:00;;;00;NA;NA;NA;?;N;;NA;NA;NA;;;;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;"); + + } + + { + // check survey file content + + URL url = new URL(urlPrefix + "survey.csv"); + ServiceDbResource.assertFileContent("survey export:\n", + url, + "Annee;Serie;Serie_Partielle;Navire;Pays;Zone_Etude;Campagne;Id_Sismer;Date_Deb_Campagne;Port_Deb_Campagne;Date_Fin_Campagne;Port_Fin_Campagne;Chef_Mission;Resp_Salle_Tri;Commentaire\n" + + "2013;test elevation;1;278970;FRA;CGFS - Manche Est / Sud Mer du Nord;test elevation_2013_1;;01/07/2013 00:00:00;La Barbotière (Gujan-Mestras);04/07/2013 00:00:00;La Barbotière (Gujan-Mestras);Adrian LEVREL;Alain BISEAU;;"); + + } + + { + // check individualObservation file content + + URL url = new URL(urlPrefix + "individualObservation.csv"); + ServiceDbResource.assertFileContent("individualObservation export:\n", + url, + "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;BatchId;ReferenceTaxonId;ReferenceTaxonName;Commentaire;CaracteristicId;CaracteristicValue"); + + } + + { + // check catch file content + + URL url = new URL("jar:" + exportFile.toURI().toURL() + "!/exportCruise-" + CRUISE_ID + "/catch.csv"); + ServiceDbResource.assertFileContent("Catch export:\n", + url, + "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;Taxon;Nom_scientifique;Commentaire;V_HV;Num_Ordre_V_HV_H2;Tot_V_HV;Ech_V_HV;Type_Volume_Poids_V_HV;Unite_Volume_Poids_V_HV;Class_Tri_;Num_Ordre_Class_Tri__H2;Tot_Class_Tri_;Ech_Class_Tri_;Type_Volume_Poids_Class_Tri_;Unite_Volume_Poids_Class_Tri_;Sexe;Num_Ordre_Sexe_H2;Tot_Sexe;Ech_Sexe;Type_Volume_Poids_Sexe;Unite_Volume_Poids_Sexe;Maturité;Num_Ordre_Maturité_H2;Tot_Maturité;Ech_Maturité;Type_Volume_Poids_Maturité;Unite_Volume_Poids_Maturité;Age;Num_Ordre_Age_H2;Tot_Age;Ech_Age;Type_Volume_Poids_Age;Unite_Volume_Poids_Age;Code_Longueur;Libelle_Longueur;Taille;NumOrdre_Taille_H2;Poids_Classe_Taille;Unite_Taille;Precision_Mesure;Nbr;Poids_Reference;Coef_Elev_Espece_Capture\n" + + "2013;test elevation;1;OTB 20/28.10;B;2;1;278970;1938;Agonus cataphractus;Trait B-2-1 AGONCAT-vrac 80;Vrac;1;80.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;80.0;3.5;\n" + + "2013;test elevation;1;OTB 20/28.10;B;2;1;278970;1358;Alosa alosa;Trait B-2-1 ALOSALO Vrac|Trait B-2-1 ALOSALO Vrac - Male 60;Vrac;2;;;Poids;kg;NA;;;;;kg;Mâle;1;60.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;60.0;5.8333335;\n" + + "2013;test elevation;1;OTB 20/28.10;B;2;1;278970;1358;Alosa alosa;Trait B-2-1 ALOSALO Vrac|Trait B-2-1 ALOSALO Vrac - Femelle 40.0;Vrac;2;;;Poids;kg;NA;;;;;kg;Femelle;2;40.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;40.0;8.75;\n" + + "2013;test elevation;1;OTB 20/28.10;B;2;1;278970;1938;Agonus cataphractus;Trait B-2-1 AGONCAT-horsvrac 20;Hors Vrac;1;20.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;20.0;1.0;\n" + + "2013;test elevation;1;OTB 20/28.10;B;2;1;278970;4622;Abietinaria abietina;\"Trait B-2-1 Benthos ABIEABI Vrac 30\n" + + "\n" + + "avec \n" + + "\n" + + "commentaire...\";Vrac;1;30.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;30.0;7.0;\n" + + "2013;test elevation;1;OTB 20/28.10;B;2;1;278970;380;Acanthocardia echinata;\"Trait B-2-1 Benthos ACANECH Vrac 18\n" + + "\n" + + "avec \n" + + "\n" + + "commentaire...\";Vrac;2;18.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;18.0;7.0;\n" + + "2013;test elevation;1;OTB 20/28.10;A;1;1;278970;1938;Agonus cataphractus;AGONCAT-vrac-80;Vrac;1;80.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;80.0;5.4444447;\n" + + "2013;test elevation;1;OTB 20/28.10;A;1;1;278970;1358;Alosa alosa;ALOSALO-vrac|ALOSALO-vrac-male 60;Vrac;2;;;Poids;kg;NA;;;;;kg;Mâle;1;60.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;60.0;9.074075;\n" + + "2013;test elevation;1;OTB 20/28.10;A;1;1;278970;1358;Alosa alosa;ALOSALO-vrac|ALOSALO-vrac-femelle 40;Vrac;2;;;Poids;kg;NA;;;;;kg;Femelle;2;40.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;5.0;1;0.6;cm;1.0;4;0.6;907.4074;\n" + + "2013;test elevation;1;OTB 20/28.10;A;1;1;278970;1358;Alosa alosa;ALOSALO-vrac|ALOSALO-vrac-femelle 40;Vrac;2;;;Poids;kg;NA;;;;;kg;Femelle;2;40.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;6.0;2;0.4;cm;1.0;10;0.4;1361.1111;\n" + + "2013;test elevation;1;OTB 20/28.10;A;1;1;278970;1938;Agonus cataphractus;AGONCAT-horsvrac-20;Hors Vrac;1;20.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;20.0;1.0;\n" + + "2013;test elevation;1;;C;3;1;278970;11183;Brissopsis atlantica;|;Vrac;1;;;Poids;kg;NA;;;;;kg;UNK - Indéterminé;1;30.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;30.0;0.0;\n" + + "2013;test elevation;1;;C;3;1;278970;11183;Brissopsis atlantica;|;Vrac;1;;;Poids;kg;NA;;;;;kg;Mâle;2;20.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;20.0;0.0;\n" + + "2013;test elevation;1;;C;3;1;278970;11183;Brissopsis atlantica;|;Vrac;1;;;Poids;kg;NA;;;;;kg;Femelle;3;;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;;1.0;"); + + } + + { + // check gearCaracteristics file content + + URL url = new URL(urlPrefix + "gearCaracteristics.csv"); + ServiceDbResource.assertFileContent("gearCaracteristics export:\n", + url, + "Annee;Serie;Serie_Partielle;Engin;Code_PMFM;Libelle_PMFM;Valeur"); + + } + + { + // check marineLitter file content + + URL url = new URL(urlPrefix + "marineLitter.csv"); + ServiceDbResource.assertFileContent("marineLitter export:\n", + url, + "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;MarineLitterCategory;MarineLitterSizeCategory;Number;Weight;Commentaire\n" + + "2013;test elevation;1;OTB 20/28.10;B;2;1;278970;L1 PLASTIQUE;A: <5*5 cm= 25 cm2;10;;\"Trait B-2-1 Macro dechet L1 Plastique (nb 10)\n" + + "\n" + + "avec \n" + + "\n" + + "commentaire...\";"); + + } + { + // check parameter file content + + URL url = new URL(urlPrefix + "parameter.csv"); + ServiceDbResource.assertFileContent("parameter export:\n", + url, + "Annee;Serie;Serie_Partielle;Code_station;Numero_Trait;Poche;Code_PMFM;Libelle_PMFm;Valeur"); + + } + } +} Copied: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportServiceTest.java (from rev 1361, trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/TuttiExportServiceTest.java) =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportServiceTest.java (rev 0) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportServiceTest.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,506 @@ +package fr.ifremer.tutti.service.export.generic; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import com.google.common.collect.Lists; +import com.google.common.io.Files; +import fr.ifremer.tutti.persistence.ProgressionModel; +import fr.ifremer.tutti.persistence.entities.TuttiEntities; +import fr.ifremer.tutti.persistence.entities.data.FishingOperation; +import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.ServiceDbResource; +import fr.ifremer.tutti.service.TuttiServiceContext; +import fr.ifremer.tutti.service.export.generic.TuttiExportService; +import org.junit.Assert; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Ignore; +import org.junit.Test; + +import java.io.File; +import java.util.List; +import java.util.Map; + +/** + * @author tchemit <chemit@codelutin.com> + * @since 1.3 + */ +public class TuttiExportServiceTest { + + @ClassRule + public static final ServiceDbResource dbResource = + ServiceDbResource.readDb("dbCGFS"); + + public static final String PROGRAM_ID = "CAM-CGFS"; + + public static final String CRUISE_ID = "100001"; + + public static final String CRUISE_CGFS_ID = "100000"; + + public static final String OPERATION_1_ID = "100106"; + + public static final String OPERATION_2_ID = "100107"; + + public static final String SURVEY_CONTENT = + "Annee;Serie;Serie_Partielle;Navire;Pays;Zone_Etude;Campagne;Id_Sismer;Date_Deb_Campagne;Port_Deb_Campagne;Date_Fin_Campagne;Port_Fin_Campagne;Chef_Mission;Resp_Salle_Tri;Commentaire\n" + + "2013;Campagne CGFS;;278970;FRA;CGFS - Manche Est / Sud Mer du Nord;Campagne CGFS_2013;;01/05/2013 00:00:00;La Barbotière (Gujan-Mestras);31/05/2013 00:00:00;Etang de Palo;Vincent AURECHE;Alain TETARD;;"; + + public static final String GEAR_CARACTERISTICS_CONTENT = + "Annee;Serie;Serie_Partielle;Engin;Code_PMFM;Libelle_PMFM;Valeur\n" + + "2013;Campagne CGFS;;ScientificGear;289;Armature (drague) - engin - totale - Déclaration d'un professionnel;Lame;\n" + + "2013;Campagne CGFS;;ScientificGear;121;Diamètre du goulot (Casier) - engin - goulotte - Déclaration d'un professionnel;120.0;\n" + + "2013;Campagne CGFS;;ScientificGear;927;Maillage étiré de l'engin - engin - Maille des ailes - Inconnue;15.0;\n" + + "2013;Campagne CGFS;;ScientificGear;287;Volet dépresseur (drague) - engin - totale - Déclaration d'un professionnel;Oui;"; + + public static final String OPERATION_WITH_NO_CATCH_CONTENT = + "Annee;Serie;Serie_Partielle;Code_Station;Numero_Trait;Poche;Engin;Navire;DateDeb_Op;LatDeb;LongDeb;DateFin_Op;LatFin;LongFin;Duree;Strate;Sous-Strate;Localite;Validite_OP;Rectiligne;Distance;Ouv_Verticale;Ouv_Horizontale_Ailes;Ouv_Horizontale_Panneaux;Saisisseur;NavireAssocie;Commentaire;Poids_Total;Poids_Total_Calcule;Poids_Total_Vrac;Poids_Total_Vrac_Calcule;Poids_Total_HorsVrac;Poids_Total_HorsVrac_Calcule;Poids_Total_Non_Trie;Poids_Total_Non_Trie_Calcule;Poids_Total_Tremis;Poids_Total_Tremis_Calcule;Poids_Total_Carroussel;Poids_Total_Carroussel_Calcule;Poids_Total_Espece;Poids_Total_Espece_Calcule;Poids_Total_Espece_Vrac;Poids_Total_Espece_Vrac_Calcule;Poids_Total_Espece_Vrac_Trie;Poids_Total_Espece_Vrac_Trie_Calcule;Poids_Total_Espece_HorsVrac;Poids_Total_Espece_HorsVrac_Calcule;Poids_Total_Espece_Inerte_Trie;Poids_Total_Espece_Inerte_Trie_Calcule;Poids_Total_Espece_Vivant_non_detaille_trie;Poids_Total_Espece_Vivant_non_detaille_trie_Calcule;Poids_Total_Benthos;Poids_Total_Benthos_Calcule;Poids_Total_Benthos_Vrac;Poids_Total_Benthos_Vrac_Calcule;Poids_Total_Benthos_Vrac_Trie;Poids_Total_Benthos_Vrac_Trie_Calcule;Poids_Total_Benthos_HorsVrac;Poids_Total_Benthos_HorsVrac_Calcule;Poids_Total_Benthos_Inerte_Trie;Poids_Total_Benthos_Inerte_Trie_Calcule;Poids_Total_Benthos_Vivant_non_detaille_trie;Poids_Total_Benthos_Vivant_non_detaille_trie_Calcule;Poids_Total_Macro_Dechet;Poids_Total_Macro_Dechet_Calcule\n" + + "2010;Campagne CGFS;;65;65;1;GOV 19.7/25.9;278970;13/10/2010 13:35:00;50.22833;0.31833;13/10/2010 14:05:00;50.22167;0.28333;30;Strate 4J;NA;Localité 4J2;N;Y;2512.0;NA;NA;NA;;;avarie - chalut annulé completement à poil;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;"; + + public static final String OPERATION_WITH_NO_CATCH_CONTENT_AND_NO_GEAR = + "Annee;Serie;Serie_Partielle;Code_Station;Numero_Trait;Poche;Engin;Navire;DateDeb_Op;LatDeb;LongDeb;DateFin_Op;LatFin;LongFin;Duree;Strate;Sous-Strate;Localite;Validite_OP;Rectiligne;Distance;Ouv_Verticale;Ouv_Horizontale_Ailes;Ouv_Horizontale_Panneaux;Saisisseur;NavireAssocie;Commentaire;Poids_Total;Poids_Total_Calcule;Poids_Total_Vrac;Poids_Total_Vrac_Calcule;Poids_Total_HorsVrac;Poids_Total_HorsVrac_Calcule;Poids_Total_Non_Trie;Poids_Total_Non_Trie_Calcule;Poids_Total_Tremis;Poids_Total_Tremis_Calcule;Poids_Total_Carroussel;Poids_Total_Carroussel_Calcule;Poids_Total_Espece;Poids_Total_Espece_Calcule;Poids_Total_Espece_Vrac;Poids_Total_Espece_Vrac_Calcule;Poids_Total_Espece_Vrac_Trie;Poids_Total_Espece_Vrac_Trie_Calcule;Poids_Total_Espece_HorsVrac;Poids_Total_Espece_HorsVrac_Calcule;Poids_Total_Espece_Inerte_Trie;Poids_Total_Espece_Inerte_Trie_Calcule;Poids_Total_Espece_Vivant_non_detaille_trie;Poids_Total_Espece_Vivant_non_detaille_trie_Calcule;Poids_Total_Benthos;Poids_Total_Benthos_Calcule;Poids_Total_Benthos_Vrac;Poids_Total_Benthos_Vrac_Calcule;Poids_Total_Benthos_Vrac_Trie;Poids_Total_Benthos_Vrac_Trie_Calcule;Poids_Total_Benthos_HorsVrac;Poids_Total_Benthos_HorsVrac_Calcule;Poids_Total_Benthos_Inerte_Trie;Poids_Total_Benthos_Inerte_Trie_Calcule;Poids_Total_Benthos_Vivant_non_detaille_trie;Poids_Total_Benthos_Vivant_non_detaille_trie_Calcule;Poids_Total_Macro_Dechet;Poids_Total_Macro_Dechet_Calcule\n" + + "2010;Campagne CGFS;;65;65;1;;278970;13/10/2010 13:35:00;50.22833;0.31833;13/10/2010 14:05:00;50.22167;0.28333;30;Strate 4J;NA;Localité 4J2;N;Y;2512.0;NA;NA;NA;;;avarie - chalut annulé completement à poil;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;;?;"; + + public static final String OPERATION_CONTENT = + "Annee;Serie;Serie_Partielle;Code_Station;Numero_Trait;Poche;Engin;Navire;DateDeb_Op;LatDeb;LongDeb;DateFin_Op;LatFin;LongFin;Duree;Strate;Sous-Strate;Localite;Validite_OP;Rectiligne;Distance;Ouv_Verticale;Ouv_Horizontale_Ailes;Ouv_Horizontale_Panneaux;Saisisseur;NavireAssocie;Commentaire;Poids_Total;Poids_Total_Calcule;Poids_Total_Vrac;Poids_Total_Vrac_Calcule;Poids_Total_HorsVrac;Poids_Total_HorsVrac_Calcule;Poids_Total_Non_Trie;Poids_Total_Non_Trie_Calcule;Poids_Total_Tremis;Poids_Total_Tremis_Calcule;Poids_Total_Carroussel;Poids_Total_Carroussel_Calcule;Poids_Total_Espece;Poids_Total_Espece_Calcule;Poids_Total_Espece_Vrac;Poids_Total_Espece_Vrac_Calcule;Poids_Total_Espece_Vrac_Trie;Poids_Total_Espece_Vrac_Trie_Calcule;Poids_Total_Espece_HorsVrac;Poids_Total_Espece_HorsVrac_Calcule;Poids_Total_Espece_Inerte_Trie;Poids_Total_Espece_Inerte_Trie_Calcule;Poids_Total_Espece_Vivant_non_detaille_trie;Poids_Total_Espece_Vivant_non_detaille_trie_Calcule;Poids_Total_Benthos;Poids_Total_Benthos_Calcule;Poids_Total_Benthos_Vrac;Poids_Total_Benthos_Vrac_Calcule;Poids_Total_Benthos_Vrac_Trie;Poids_Total_Benthos_Vrac_Trie_Calcule;Poids_Total_Benthos_HorsVrac;Poids_Total_Benthos_HorsVrac_Calcule;Poids_Total_Benthos_Inerte_Trie;Poids_Total_Benthos_Inerte_Trie_Calcule;Poids_Total_Benthos_Vivant_non_detaille_trie;Poids_Total_Benthos_Vivant_non_detaille_trie_Calcule;Poids_Total_Macro_Dechet;Poids_Total_Macro_Dechet_Calcule\n" + + "2013;Campagne CGFS;;A;1;1;GOV 19.7/25.9;278970;01/05/2013 00:00:00;;;01/05/2013 00:23:00;;;23;Strate 1D;NA;Localité 1D2;?;N;;NA;NA;NA;Vincent AURECHE;;op1;120.0;Y;100.0;Y;20.0;Y;0.0;Y;;?;;?;120.0;Y;100.0;Y;100.0;Y;20.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;6.0;Y;\n" + + "2013;Campagne CGFS;;A;2;1;GOV 19.7/25.9;278970;11/05/2013 08:00:00;;;11/05/2013 08:23:00;;;23;Strate 1D;NA;Localité 1D2;?;N;;NA;NA;NA;Robert BELLAIL|Herve BARONE;;OP2;0.0;Y;0.0;Y;0.0;Y;0.0;Y;;?;;?;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;0.0;Y;"; + + public static final String PARAMETER_CONTENT = + "Annee;Serie;Serie_Partielle;Code_station;Numero_Trait;Poche;Code_PMFM;Libelle_PMFm;Valeur\n" + + "2013;Campagne CGFS;;A;1;1;1164;Catégorie UE - produit/lot - totale - Diffusion par une Halle à marée;Cat UE10;\n" + + "2013;Campagne CGFS;;A;1;1;1302;(Gross Tonnage) : augmentation de tonnage accordée pour des raisons de sécurité - navire - totale - Déclaration d'un professionnel;10.0;\n" + + "2013;Campagne CGFS;;A;1;1;194;\"Etat de la mer - masse d'eau, eau brute - totale - Observation par un observateur\";\"2 - belle, vagues de 0.1 à 0.5 mètres\";\n" + + "2013;Campagne CGFS;;A;1;1;821;Direction vent - air - totale - Instrument de bord;0.1;\n" + + "2013;Campagne CGFS;;A;1;1;149;Coût de la glace - navire - totale - Déclaration d'un professionnel;10.0;\n" + + "2013;Campagne CGFS;;A;2;1;1062;Catégorie de fraicheur - produit/lot - totale - Diffusion par une Halle à marée;A - Catégorie A;\n" + + "2013;Campagne CGFS;;A;2;1;308;Nombre d'engin - engin - totale - Déclaration d'un professionnel;2.0;"; + + public static final String CATCH_CONTENT = + "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;Taxon;Nom_scientifique;Commentaire;V_HV;Num_Ordre_V_HV_H2;Tot_V_HV;Ech_V_HV;Type_Volume_Poids_V_HV;Unite_Volume_Poids_V_HV;Class_Tri_;Num_Ordre_Class_Tri__H2;Tot_Class_Tri_;Ech_Class_Tri_;Type_Volume_Poids_Class_Tri_;Unite_Volume_Poids_Class_Tri_;Sexe;Num_Ordre_Sexe_H2;Tot_Sexe;Ech_Sexe;Type_Volume_Poids_Sexe;Unite_Volume_Poids_Sexe;Maturité;Num_Ordre_Maturité_H2;Tot_Maturité;Ech_Maturité;Type_Volume_Poids_Maturité;Unite_Volume_Poids_Maturité;Age;Num_Ordre_Age_H2;Tot_Age;Ech_Age;Type_Volume_Poids_Age;Unite_Volume_Poids_Age;Code_Longueur;Libelle_Longueur;Taille;NumOrdre_Taille_H2;Poids_Classe_Taille;Unite_Taille;Precision_Mesure;Nbr;Poids_Reference;Coef_Elev_Espece_Capture\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;|||;Vrac;1;100.0;;Poids;kg;G - Gros;1;80.0;;Poids;kg;Mâle;1;30.0;;Poids;kg;1 - Stade 1;1;10.0;5.0;Poids;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;10.0;1;;cm;0.5;5;5.0;20.0;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;|||;Vrac;1;100.0;;Poids;kg;G - Gros;1;80.0;;Poids;kg;Mâle;1;30.0;;Poids;kg;1 - Stade 1;1;10.0;5.0;Poids;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;10.5;2;;cm;0.5;2;5.0;20.0;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;|||;Vrac;1;100.0;;Poids;kg;G - Gros;1;80.0;;Poids;kg;Mâle;1;30.0;;Poids;kg;1 - Stade 1;1;10.0;5.0;Poids;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;11.0;3;;cm;0.5;1;5.0;20.0;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;|||;Vrac;1;100.0;;Poids;kg;G - Gros;1;80.0;;Poids;kg;Mâle;1;30.0;;Poids;kg;3 - Stade 3;3;10.0;;Poids;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;11.0;1;;cm;0.5;5;10.0;10.0;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;||;Vrac;1;100.0;;Poids;kg;G - Gros;1;80.0;;Poids;kg;Femelle;2;50.0;30.0;Poids;kg;3 - Stade 3;3;10.0;;Poids;kg;NA;;;;;kg;1425;Longueur totale (LT) - individu - queue - Mesure au cm par un observateur;10.0;1;;cm;;5;30.0;3.3333333;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;||;Vrac;1;100.0;;Poids;kg;G - Gros;1;80.0;;Poids;kg;Femelle;2;50.0;30.0;Poids;kg;3 - Stade 3;3;10.0;;Poids;kg;NA;;;;;kg;1425;Longueur totale (LT) - individu - queue - Mesure au cm par un observateur;11.0;2;;cm;;6;30.0;3.3333333;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;||;Vrac;1;100.0;;Poids;kg;G - Gros;1;80.0;;Poids;kg;Femelle;2;50.0;30.0;Poids;kg;3 - Stade 3;3;10.0;;Poids;kg;NA;;;;;kg;1425;Longueur totale (LT) - individu - queue - Mesure au cm par un observateur;12.0;3;;cm;;7;30.0;3.3333333;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;|;Vrac;1;100.0;;Poids;kg;M - Moyen;2;20.0;;Poids;kg;Femelle;2;50.0;30.0;Poids;kg;3 - Stade 3;3;10.0;;Poids;kg;NA;;;;;kg;;;;;;;;;20.0;5.0;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;11242;Aaptos;;Hors Vrac;1;20.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;2;20.0;1.0;"; + + public static final String CATCH_CONTENT_2 = + "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;Taxon;Nom_scientifique;Commentaire;V_HV;Num_Ordre_V_HV_H2;Tot_V_HV;Ech_V_HV;Type_Volume_Poids_V_HV;Unite_Volume_Poids_V_HV;Class_Tri_;Num_Ordre_Class_Tri__H2;Tot_Class_Tri_;Ech_Class_Tri_;Type_Volume_Poids_Class_Tri_;Unite_Volume_Poids_Class_Tri_;Sexe;Num_Ordre_Sexe_H2;Tot_Sexe;Ech_Sexe;Type_Volume_Poids_Sexe;Unite_Volume_Poids_Sexe;Maturité;Num_Ordre_Maturité_H2;Tot_Maturité;Ech_Maturité;Type_Volume_Poids_Maturité;Unite_Volume_Poids_Maturité;Age;Num_Ordre_Age_H2;Tot_Age;Ech_Age;Type_Volume_Poids_Age;Unite_Volume_Poids_Age;Code_Longueur;Libelle_Longueur;Taille;NumOrdre_Taille_H2;Poids_Classe_Taille;Unite_Taille;Precision_Mesure;Nbr;Poids_Reference;Coef_Elev_Espece_Capture\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;365;Aequipecten opercularis;taxon;Vrac;1;0.005;0.005;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.005;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;491;Alloteuthis;taxon;Vrac;2;0.004;0.004;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.004;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;300;Buccinum undatum;taxon;Vrac;3;0.015;0.015;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.015;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1811;Callionymus lyra;taxon;Vrac;4;0.07;0.07;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.07;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1644;Dicentrarchus labrax;taxon;Vrac;5;1.06;1.06;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;36.0;1;;cm;1.0;1;1.06;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1644;Dicentrarchus labrax;taxon;Vrac;5;1.06;1.06;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;38.0;2;;cm;1.0;1;1.06;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1362;Engraulis encrasicolus;taxon;Vrac;6;0.038;0.038;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;10.5;1;;cm;0.5;2;0.038;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1362;Engraulis encrasicolus;taxon;Vrac;6;0.038;0.038;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;12.5;2;;cm;0.5;1;0.038;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1362;Engraulis encrasicolus;taxon;Vrac;6;0.038;0.038;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;13.0;3;;cm;0.5;1;0.038;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1986;Limanda limanda;taxon;Vrac;7;0.66;0.66;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;25.0;1;;cm;1.0;1;0.66;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1986;Limanda limanda;taxon;Vrac;7;0.66;0.66;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;28.0;2;;cm;1.0;1;0.66;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1986;Limanda limanda;taxon;Vrac;7;0.66;0.66;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;30.0;3;;cm;1.0;1;0.66;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;489;Loligo vulgaris;taxon;Vrac;8;0.28;0.28;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;302;Longueur du manteau (LM) - individu - manteau - Mesure au cm par un observateur;9.0;1;;cm;1.0;1;0.28;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;489;Loligo vulgaris;taxon;Vrac;8;0.28;0.28;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;302;Longueur du manteau (LM) - individu - manteau - Mesure au cm par un observateur;10.0;2;;cm;1.0;3;0.28;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;489;Loligo vulgaris;taxon;Vrac;8;0.28;0.28;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;302;Longueur du manteau (LM) - individu - manteau - Mesure au cm par un observateur;11.0;3;;cm;1.0;2;0.28;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1988;Microstomus kitt;taxon;Vrac;9;0.152;0.152;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;15.0;1;;cm;1.0;1;0.152;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1988;Microstomus kitt;taxon;Vrac;9;0.152;0.152;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;18.0;2;;cm;1.0;1;0.152;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1690;Mullus surmuletus;taxon;Vrac;10;0.036;0.036;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;11.0;1;;cm;1.0;1;0.036;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1978;Pleuronectes platessa;taxon;Vrac;11;0.852;0.852;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;26.0;1;;cm;1.0;1;0.852;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1978;Pleuronectes platessa;taxon;Vrac;11;0.852;0.852;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;30.0;2;;cm;1.0;1;0.852;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1351;Sardina pilchardus;taxon;Vrac;12;0.022;0.022;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;10.5;1;;cm;0.5;1;0.022;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1772;Scomber scombrus;taxon;Vrac;13;0.18;0.18;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;27.0;1;;cm;1.0;1;0.18;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1242;Scyliorhinus canicula;taxon|categorie_individu;Vrac;14;;;Poids;kg;NA;;;;;kg;Femelle;1;1.0;1.0;Poids;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;51.0;1;;cm;1.0;1;1.0;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1242;Scyliorhinus canicula;taxon|categorie_individu;Vrac;14;;;Poids;kg;NA;;;;;kg;Femelle;1;1.0;1.0;Poids;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;55.0;2;;cm;1.0;1;1.0;1.0;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1662;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;8.0;1;;cm;1.0;1;0.96;136.71875;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1662;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;9.0;2;;cm;1.0;20;0.96;136.71875;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1662;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;10.0;3;;cm;1.0;89;0.96;136.71875;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1662;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;11.0;4;;cm;1.0;5;0.96;136.71875;\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;278970;1662;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;G - Gros;2;0.13;0.13;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;23.0;1;;cm;1.0;1;0.13;1009.6154;"; + + public static final String MARINE_LITTER_CONTENT = + "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;MarineLitterCategory;MarineLitterSizeCategory;Number;Weight;Commentaire\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;L1 PLASTIQUE;A: <5*5 cm= 25 cm2;2;5.0;S1;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;L1a Sacs;B: <10*10 cm= 100 cm2;3;1.0;S2;"; + + public static final String INDIVIDUAL_OBSERVATION_CONTENT = + "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;BatchId;ReferenceTaxonId;ReferenceTaxonName;Commentaire;CaracteristicId;CaracteristicValue\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;220;0.1;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;1433;307;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;307;10.0;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;1436;10;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;1435;A20;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;101;10.0;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;46;0L - 0 VMS - 1 LB;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100000;11242;Aaptos;P1;1388;5.0;"; + + public static final String ACCIDENTAL_CATCH_CONTENT = + "Annee;Serie;Serie_Partielle;Engin;Code_station;Numero_Trait;Poche;Navire;BatchId;ReferenceTaxonId;ReferenceTaxonName;Commentaire;CaracteristicId;CaracteristicValue\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100001;3835;Abalistes;;1393;Rejet mort;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100001;3835;Abalistes;;196;Femelle;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100001;3835;Abalistes;;220;10.0;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100001;3835;Abalistes;;1433;1425;\n" + + "2013;Campagne CGFS;;GOV 19.7/25.9;A;1;1;278970;100001;3835;Abalistes;;1425;4.0;"; + + public static final String SPECIES_CONTENT = + "Id;Code_Rubin;Nom Scientifique;Code campagne\n" + + "3835;ABAL;Abalistes;;\n" + + "11242;AAPT;Aaptos;;\n" + + "11243;AAPTAAP;Aaptos aaptos;;"; + + public static final String SPECIES_CONTENT_2 = + "Id;Code_Rubin;Nom Scientifique;Code campagne\n" + + "300;BUCCUND;Buccinum undatum;;\n" + + "365;AEQUOPE;Aequipecten opercularis;;\n" + + "489;LOLIVUL;Loligo vulgaris;LOLIVUL;\n" + + "491;ALLO;Alloteuthis;ALLOSPP;\n" + + "1242;SCYOCAN;Scyliorhinus canicula;SCYOCAN;\n" + + "1351;SARDPIL;Sardina pilchardus;SARDPIL;\n" + + "1362;ENGRENC;Engraulis encrasicolus;ENGRENC;\n" + + "1644;DICELAB;Dicentrarchus labrax;DICELAB;\n" + + "1662;TRACTRA;Trachurus trachurus;TRACTRA;\n" + + "1690;MULLSUR;Mullus surmuletus;MULLSUR;\n" + + "1772;SCOMSCO;Scomber scombrus;SCOMSCO;\n" + + "1811;CALMLYR;Callionymus lyra;CALMLYR;\n" + + "1978;PLEUPLA;Pleuronectes platessa;;\n" + + "1986;LIMDLIM;Limanda limanda;;\n" + + "1988;MICTKIT;Microstomus kitt;;"; + + public static final int NB_EXPECTED_CGFS_OPERATIONS = 106; + + protected TuttiExportService service; + + protected PersistenceService persistenceService; + + protected ServiceDbResource.DataContext dataContext; + + protected ProgressionModel progressionModel; + + protected File dataDirectory; + + @Before + public void setUp() throws Exception { + + dataDirectory = dbResource.getServiceConfig().getDataDirectory(); + + TuttiServiceContext serviceContext = dbResource.getServiceContext(); + + persistenceService = serviceContext.getService(PersistenceService.class); + + dbResource.setCountryInConfig("12"); + dbResource.openDataContext(); + + service = serviceContext.getService(TuttiExportService.class); + + dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 2, OPERATION_1_ID, OPERATION_2_ID); + + progressionModel = new ProgressionModel(); + progressionModel.setTotal(9); + } + + @Ignore + @Test + public void exportProgram() throws Exception { + + File exportFile = new File(dataDirectory, "exportProgram.zip"); + + Files.createParentDirs(exportFile); + + Assert.assertFalse(exportFile.exists()); + + service.exportProgram(dataContext.program.getId(), exportFile, progressionModel); + Assert.assertTrue(exportFile.exists()); + } + + @Test + public void exportCruise() throws Exception { + + File exportFile = new File(dataDirectory, "exportCruise.zip"); + + Files.createParentDirs(exportFile); + + Assert.assertFalse(exportFile.exists()); + + service.exportCruise(dataContext.cruise.getId(), exportFile, progressionModel); + Assert.assertTrue(exportFile.exists()); + } + + @Test + public void exportSurvey() throws Exception { + + TuttiExportService.ExportContext exportContext = + service.createExportContext(dataDirectory); + + try { + service.exportSurvey(exportContext, dataContext.cruise); + } finally { + exportContext.close(); + } + ServiceDbResource.assertFileContent("Survey export:\n", + exportContext.surveyFile, + SURVEY_CONTENT); + } + + @Test + public void exportGearCaracteristics() throws Exception { + + TuttiExportService.ExportContext exportContext = + service.createExportContext(dataDirectory); + + try { + service.exportGearCaracteristics(exportContext, dataContext.cruise); + } finally { + exportContext.close(); + } + ServiceDbResource.assertFileContent("Gear caracteristics export:\n", + exportContext.gearCaracteristicsFile, + GEAR_CARACTERISTICS_CONTENT); + } + + @Test + public void exportOperations() throws Exception { + +// loadData(PROGRAM_ID, CRUISE_CGFS_ID); + + TuttiExportService.ExportContext exportContext = + service.createExportContext(dataDirectory); + + try { + service.exportOperations(exportContext, dataContext.cruise, dataContext.operations); + } finally { + exportContext.close(); + } + ServiceDbResource.assertFileContent("Operation export:\n", + exportContext.operationFile, + OPERATION_CONTENT); + } + + @Test + public void exportOperationsWithNoCatches() throws Exception { + + dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_CGFS_ID, NB_EXPECTED_CGFS_OPERATIONS); + + FishingOperation operation = TuttiEntities.findById(dataContext.operations, "100105"); + dataContext.operations = Lists.newArrayList(operation); + + TuttiExportService.ExportContext exportContext = + service.createExportContext(dataDirectory); + + try { + service.exportOperations(exportContext, dataContext.cruise, dataContext.operations); + } finally { + exportContext.close(); + } + + ServiceDbResource.assertFileContent("Operation export:\n", + exportContext.operationFile, + OPERATION_WITH_NO_CATCH_CONTENT); + } + + @Test + public void exportOperationsWithNoGear() throws Exception { + + dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_CGFS_ID, NB_EXPECTED_CGFS_OPERATIONS); + + FishingOperation operation = TuttiEntities.findById(dataContext.operations, "100105"); + operation.setGear(null); + dataContext.operations = Lists.newArrayList(operation); + + TuttiExportService.ExportContext exportContext = + service.createExportContext(dataDirectory); + + try { + service.exportOperations(exportContext, dataContext.cruise, dataContext.operations); + } finally { + exportContext.close(); + } + + ServiceDbResource.assertFileContent("Operation export:\n", + exportContext.operationFile, + OPERATION_WITH_NO_CATCH_CONTENT_AND_NO_GEAR); + } + + @Test + public void exportParameters() throws Exception { + + TuttiExportService.ExportContext exportContext = + service.createExportContext(dataDirectory); + + try { + service.exportParameters(exportContext, dataContext.cruise, dataContext.operations); + } finally { + exportContext.close(); + } + ServiceDbResource.assertFileContent("Parameter export:\n", + exportContext.parameterFile, + PARAMETER_CONTENT); + } + + @Test + public void exportCatches() throws Exception { + + TuttiExportService.ExportContext exportContext = + service.createExportContext(dataDirectory); + + try { + service.exportCatches(exportContext, dataContext.cruise, dataContext.operations); + } finally { + exportContext.close(); + } + ServiceDbResource.assertFileContent("Catch export:\n", + exportContext.catchFile, + CATCH_CONTENT); + } + + // To fix http://forge.codelutin.com/issues/2692 + @Test + public void exportCatchesAndSpecies() throws Exception { + + File protocolFile = new File("src/test/resources/tuttiProtocol.tuttiProtocol"); + + TuttiProtocol protocol = dbResource.loadProtocol(protocolFile); + + persistenceService.setProtocol(protocol); + + dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_CGFS_ID, NB_EXPECTED_CGFS_OPERATIONS); + + FishingOperation operation = TuttiEntities.findById(dataContext.operations, "100000"); + dataContext.operations = Lists.newArrayList(operation); + + TuttiExportService.ExportContext exportContext = + service.createExportContext(dataDirectory); + + try { + service.exportCatches(exportContext, dataContext.cruise, dataContext.operations); + service.exportSpecies(exportContext, exportContext.getSpeciesToExport()); + } finally { + exportContext.close(); + } + + ServiceDbResource.assertFileContent("species export:\n", + exportContext.speciesFile, + SPECIES_CONTENT_2); + + ServiceDbResource.assertFileContent("Catch export:\n", + exportContext.catchFile, + CATCH_CONTENT_2); + + + } + + // To fix http://forge.codelutin.com/issues/2523 + @Test + public void exportBadCatches() throws Exception { + + dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_CGFS_ID, NB_EXPECTED_CGFS_OPERATIONS); + + TuttiExportService.ExportContext exportContext = + service.createExportContext(dataDirectory); + + try { + service.exportCatches(exportContext, dataContext.cruise, dataContext.operations); + } finally { + exportContext.close(); + } + } + + @Test + public void exportMarineLitters() throws Exception { + + TuttiExportService.ExportContext exportContext = + service.createExportContext(dataDirectory); + + try { + service.exportMarineLitters(exportContext, dataContext.cruise, dataContext.operations); + } finally { + exportContext.close(); + } + ServiceDbResource.assertFileContent("MarineLitter export:\n", + exportContext.marineLitterFile, + MARINE_LITTER_CONTENT); + } + + @Test + public void exportIndividualObservations() throws Exception { + + TuttiExportService.ExportContext exportContext = + service.createExportContext(dataDirectory); + + try { + service.exportIndividualObservations(exportContext, dataContext.cruise, dataContext.operations); + } finally { + exportContext.close(); + } + ServiceDbResource.assertFileContent("individualObservation export:\n", + exportContext.individualObservationFile, + INDIVIDUAL_OBSERVATION_CONTENT); + } + + @Test + public void exportAccidentalCatch() throws Exception { + + TuttiExportService.ExportContext exportContext = + service.createExportContext(dataDirectory); + + try { + service.exportAccidentalCatch(exportContext, dataContext.cruise, dataContext.operations); + } finally { + exportContext.close(); + } + ServiceDbResource.assertFileContent("accidentalCatch export:\n", + exportContext.accidentalCatchFile, + ACCIDENTAL_CATCH_CONTENT); + } + + @Test + public void exportSpecies() throws Exception { + + TuttiExportService.ExportContext exportContext = + service.createExportContext(dataDirectory); + + try { + List<Species> allReferentSpecies = + persistenceService.getAllReferentSpecies(); + + Map<String, Species> allReferentSpeciesById = + TuttiEntities.splitById(allReferentSpecies); + exportContext.addSpecies(allReferentSpeciesById.get("35883")); + exportContext.addSpecies(allReferentSpeciesById.get("35884")); + exportContext.addSpecies(allReferentSpeciesById.get("19279")); + + service.exportSpecies(exportContext, + exportContext.getSpeciesToExport()); + } finally { + exportContext.close(); + } + ServiceDbResource.assertFileContent("species export:\n", + exportContext.speciesFile, + SPECIES_CONTENT); + } + +} Copied: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/pdf/CatchesPdfExportServiceTest.java (from rev 1366, trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/catches/ExportCatchesReportServiceTest.java) =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/pdf/CatchesPdfExportServiceTest.java (rev 0) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/pdf/CatchesPdfExportServiceTest.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,70 @@ +package fr.ifremer.tutti.service.export.pdf; + +import fr.ifremer.tutti.service.PersistenceService; +import fr.ifremer.tutti.service.ServiceDbResource; +import fr.ifremer.tutti.service.TuttiServiceContext; +import org.junit.After; +import org.junit.Assert; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Test; + +import java.io.File; +import java.util.Locale; + +/** + * Created on 11/19/13. + * + * @author Tony Chemit <chemit@codelutin.com> + * @since 2.10 + */ +public class CatchesPdfExportServiceTest { + + @ClassRule + public static final ServiceDbResource dbResource = + ServiceDbResource.readDb("dbMedits"); + + public static final String PROGRAM_ID = "CAM-MEDITS"; + + public static final String CRUISE_ID = "100001"; + + public static final String OPERATION_1_ID = "100106"; + + protected CatchesPdfExportService exportService; + + protected PersistenceService persistenceService; + + protected File dataDirectory; + + @Before + public void setUp() throws Exception { + + dataDirectory = dbResource.getServiceConfig().getDataDirectory(); + + TuttiServiceContext serviceContext = dbResource.getServiceContext(); + + persistenceService = serviceContext.getService(PersistenceService.class); + + serviceContext.getDataContext().open(serviceContext.getConfig(), persistenceService); + exportService = serviceContext.getService(CatchesPdfExportService.class); + } + + @After + public void tearDown() throws Exception { + + } + + @Test + public void generateFishingOperationPDFFile() throws Exception { + + File exportFile = new File(dataDirectory, "exportOperation.pdf"); + + Assert.assertFalse(exportFile.exists()); + + exportService.generateFishingOperationPDFFile(exportFile, + OPERATION_1_ID, + Locale.FRENCH); + + Assert.assertTrue(exportFile.exists()); + } +} Copied: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/sumatra/CatchesSumatraExportServiceTest.java (from rev 1361, trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/sumatra/CatchesSumatraExportServiceTest.java) =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/sumatra/CatchesSumatraExportServiceTest.java (rev 0) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/sumatra/CatchesSumatraExportServiceTest.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -0,0 +1,112 @@ +package fr.ifremer.tutti.service.export.sumatra; + +/* + * #%L + * Tutti :: Service + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 Ifremer + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + +import fr.ifremer.tutti.service.ServiceDbResource; +import fr.ifremer.tutti.service.TuttiServiceContext; +import fr.ifremer.tutti.service.catches.TuttiWeightComputingException; +import fr.ifremer.tutti.service.export.sumatra.CatchesSumatraExportService; +import org.junit.Before; +import org.junit.ClassRule; +import org.junit.Test; + +import java.io.File; + +/** + * @author tchemit <chemit@codelutin.com> + * @since 2.4 + */ +public class CatchesSumatraExportServiceTest { + + @ClassRule + public static final ServiceDbResource dbResource = + ServiceDbResource.readDb("dbExport"); + + public static final String PROGRAM_ID = "CAM-TEST_ELEVATION"; + + public static final String CRUISE_BAD_ID = "100003"; + + public static final String CRUISE_ID = "100004"; + + public static final String OPERATION_1_ID = "100116"; + + public static final String OPERATION_BAD_1_ID = "100112"; + + public static final String OPERATION_BAD_2_ID = "100113"; + + public static final String OPERATION_BAD_3_ID = "100115"; + + public static final String EXPORT_CONTENT = + "Station;Espèce;Total;NbIndividus\n" + + "A;Chama magna;100.0;40;\n" + + "A;Echinogammarus;100.0;417;\n" + + "A;Brissopsis atlantica;100.0;94;"; + + protected CatchesSumatraExportService service; + + protected ServiceDbResource.DataContext dataContext; + + protected File dataDirectory; + + @Before + public void setUp() throws Exception { + + dataDirectory = dbResource.getServiceConfig().getDataDirectory(); + + TuttiServiceContext serviceContext = dbResource.getServiceContext(); + + dbResource.openDataContext(); + + service = serviceContext.getService(CatchesSumatraExportService.class); + } + + @Test(expected = TuttiWeightComputingException.class) + public void testExportCruiseForSumatraBadCruise() throws Exception { + + dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_BAD_ID, 3, + OPERATION_BAD_2_ID, + OPERATION_BAD_1_ID, + OPERATION_BAD_3_ID); + + File exportFile = new File(dataDirectory, "exportSumatra.csv"); + + service.exportCruiseForSumatra(exportFile, CRUISE_BAD_ID); + } + + @Test + public void testExportCruiseForSumatra() throws Exception { + + dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 1, + OPERATION_1_ID); + + File exportFile = new File(dataDirectory, "exportSumatra.csv"); + + service.exportCruiseForSumatra(exportFile, CRUISE_ID); + + ServiceDbResource.assertFileContent("Sumatra export file:\n", + exportFile, + EXPORT_CONTENT); + } +} Deleted: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/sumatra/CatchesSumatraExportServiceTest.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/sumatra/CatchesSumatraExportServiceTest.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/sumatra/CatchesSumatraExportServiceTest.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -1,111 +0,0 @@ -package fr.ifremer.tutti.service.sumatra; - -/* - * #%L - * Tutti :: Service - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 Ifremer - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public - * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-3.0.html>. - * #L% - */ - -import fr.ifremer.tutti.service.ServiceDbResource; -import fr.ifremer.tutti.service.TuttiServiceContext; -import fr.ifremer.tutti.service.catches.TuttiWeightComputingException; -import org.junit.Before; -import org.junit.ClassRule; -import org.junit.Test; - -import java.io.File; - -/** - * @author tchemit <chemit@codelutin.com> - * @since 2.4 - */ -public class CatchesSumatraExportServiceTest { - - @ClassRule - public static final ServiceDbResource dbResource = - ServiceDbResource.readDb("dbExport"); - - public static final String PROGRAM_ID = "CAM-TEST_ELEVATION"; - - public static final String CRUISE_BAD_ID = "100003"; - - public static final String CRUISE_ID = "100004"; - - public static final String OPERATION_1_ID = "100116"; - - public static final String OPERATION_BAD_1_ID = "100112"; - - public static final String OPERATION_BAD_2_ID = "100113"; - - public static final String OPERATION_BAD_3_ID = "100115"; - - public static final String EXPORT_CONTENT = - "Station;Espèce;Total;NbIndividus\n" + - "A;Chama magna;100.0;40;\n" + - "A;Echinogammarus;100.0;417;\n" + - "A;Brissopsis atlantica;100.0;94;"; - - protected CatchesSumatraExportService service; - - protected ServiceDbResource.DataContext dataContext; - - protected File dataDirectory; - - @Before - public void setUp() throws Exception { - - dataDirectory = dbResource.getServiceConfig().getDataDirectory(); - - TuttiServiceContext serviceContext = dbResource.getServiceContext(); - - dbResource.openDataContext(); - - service = serviceContext.getService(CatchesSumatraExportService.class); - } - - @Test(expected = TuttiWeightComputingException.class) - public void testExportCruiseForSumatraBadCruise() throws Exception { - - dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_BAD_ID, 3, - OPERATION_BAD_2_ID, - OPERATION_BAD_1_ID, - OPERATION_BAD_3_ID); - - File exportFile = new File(dataDirectory, "exportSumatra.csv"); - - service.exportCruiseForSumatra(exportFile, CRUISE_BAD_ID); - } - - @Test - public void testExportCruiseForSumatra() throws Exception { - - dataContext = dbResource.loadContext(PROGRAM_ID, CRUISE_ID, 1, - OPERATION_1_ID); - - File exportFile = new File(dataDirectory, "exportSumatra.csv"); - - service.exportCruiseForSumatra(exportFile, CRUISE_ID); - - ServiceDbResource.assertFileContent("Sumatra export file:\n", - exportFile, - EXPORT_CONTENT); - } -} Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiUIContext.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiUIContext.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiUIContext.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -38,19 +38,19 @@ import fr.ifremer.tutti.service.TuttiDataContext; import fr.ifremer.tutti.service.TuttiServiceContext; import fr.ifremer.tutti.service.ValidationService; -import fr.ifremer.tutti.service.catches.ExportCatchesReportService; +import fr.ifremer.tutti.service.export.pdf.CatchesPdfExportService; import fr.ifremer.tutti.service.catches.ValidateCruiseOperationsService; import fr.ifremer.tutti.service.catches.WeightCleaningService; import fr.ifremer.tutti.service.catches.WeightComputingService; import fr.ifremer.tutti.service.catches.multipost.MultiPostExportService; import fr.ifremer.tutti.service.catches.multipost.MultiPostImportService; -import fr.ifremer.tutti.service.export.TuttiExportService; +import fr.ifremer.tutti.service.export.generic.TuttiExportService; import fr.ifremer.tutti.service.protocol.ProtocolImportExportService; import fr.ifremer.tutti.service.pupitri.PupitriImportExportService; import fr.ifremer.tutti.service.referential.ReferentialImportExportService; import fr.ifremer.tutti.service.referential.TuttiReferentialSynchronizeService; import fr.ifremer.tutti.service.report.ReportService; -import fr.ifremer.tutti.service.sumatra.CatchesSumatraExportService; +import fr.ifremer.tutti.service.export.sumatra.CatchesSumatraExportService; import fr.ifremer.tutti.ui.swing.config.TuttiApplicationConfig; import fr.ifremer.tutti.ui.swing.content.MainUI; import fr.ifremer.tutti.ui.swing.util.TuttiErrorHelper; @@ -563,8 +563,8 @@ return serviceContext.getService(ValidationService.class); } - public ExportCatchesReportService getGeneratePDFService() { - return serviceContext.getService(ExportCatchesReportService.class); + public CatchesPdfExportService getGeneratePDFService() { + return serviceContext.getService(CatchesPdfExportService.class); } public TuttiExportService getTuttiExportService() { Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ExportCruiseAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ExportCruiseAction.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ExportCruiseAction.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -28,7 +28,7 @@ import fr.ifremer.tutti.TuttiBusinessException; import fr.ifremer.tutti.persistence.ProgressionModel; import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.service.export.TuttiExportService; +import fr.ifremer.tutti.service.export.generic.TuttiExportService; import fr.ifremer.tutti.ui.swing.util.action.AbstractTuttiAction; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ExportCruiseForSumatraAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ExportCruiseForSumatraAction.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ExportCruiseForSumatraAction.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -26,7 +26,7 @@ import com.google.common.base.Preconditions; import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.service.sumatra.CatchesSumatraExportService; +import fr.ifremer.tutti.service.export.sumatra.CatchesSumatraExportService; import fr.ifremer.tutti.ui.swing.content.AbstractMainUITuttiAction; import fr.ifremer.tutti.ui.swing.content.MainUIHandler; import org.apache.commons.logging.Log; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ExportProgramAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ExportProgramAction.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/ExportProgramAction.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -29,7 +29,7 @@ import fr.ifremer.tutti.persistence.ProgressionModel; import fr.ifremer.tutti.persistence.entities.data.Cruise; import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.service.export.TuttiExportService; +import fr.ifremer.tutti.service.export.generic.TuttiExportService; import fr.ifremer.tutti.ui.swing.util.action.AbstractTuttiAction; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/SendCruiseReportAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/SendCruiseReportAction.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/home/SendCruiseReportAction.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -27,7 +27,7 @@ import com.google.common.base.Preconditions; import fr.ifremer.tutti.TuttiTechnicalException; import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.service.catches.ExportCatchesReportService; +import fr.ifremer.tutti.service.export.pdf.CatchesPdfExportService; import fr.ifremer.tutti.ui.swing.content.AbstractMainUITuttiAction; import fr.ifremer.tutti.ui.swing.content.MainUIHandler; import fr.ifremer.tutti.ui.swing.util.TuttiUIUtil; @@ -96,7 +96,7 @@ } // export catches - ExportCatchesReportService service = + CatchesPdfExportService service = getContext().getGeneratePDFService(); service.generateCruisePDFFile(file, cruise.getId(), getConfig().getI18nLocale()); Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ExportFishingOperationForSumatraAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ExportFishingOperationForSumatraAction.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ExportFishingOperationForSumatraAction.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -27,7 +27,7 @@ import com.google.common.base.Preconditions; import fr.ifremer.tutti.persistence.entities.data.Cruise; import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.service.sumatra.CatchesSumatraExportService; +import fr.ifremer.tutti.service.export.sumatra.CatchesSumatraExportService; import fr.ifremer.tutti.ui.swing.util.action.AbstractTuttiAction; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ExportFishingOperationReportAction.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ExportFishingOperationReportAction.java 2013-11-21 14:30:34 UTC (rev 1369) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/ExportFishingOperationReportAction.java 2013-11-21 15:41:34 UTC (rev 1370) @@ -27,7 +27,7 @@ import com.google.common.base.Preconditions; import fr.ifremer.tutti.persistence.entities.data.Cruise; import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.service.catches.ExportCatchesReportService; +import fr.ifremer.tutti.service.export.pdf.CatchesPdfExportService; import fr.ifremer.tutti.ui.swing.util.action.AbstractTuttiAction; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; @@ -96,7 +96,7 @@ } // export catches - ExportCatchesReportService service = + CatchesPdfExportService service = getContext().getGeneratePDFService(); service.generateFishingOperationPDFFile(file, fishingOperation.getId(), getConfig().getI18nLocale());