- Cantharella-commits - mailman.cloud.codelutin.com

r233 - trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/panel
by echatellier＠users.forge.codelutin.com May 28, 2013

May 28, 2013

Author: echatellier Date: 2013-05-28 14:17:05 +0200 (Tue, 28 May 2013) New Revision: 233 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/233 Log: Force attachement download Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/panel/DocumentLinkPanel.java Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/panel/DocumentLinkPanel.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/panel/DocumentLinkPanel.java 2013-05-28 10:15:32 UTC (rev 232) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/panel/DocumentLinkPanel.java 2013-05-28 12:17:05 UTC (rev 233) @@ -51,7 +51,7 @@ final Document document = model.getObject(); ResourceLink<Document> link = new ResourceLink<Document>("link", new ByteArrayResource(document - .getFileMimetype(), document.getFileContent())); + .getFileMimetype(), document.getFileContent(), document.getFileName())); add(link); // les images ne doivent pas être mise en cache car les liens

1 0

r232 - trunk/cantharella.web/src/main/webapp/js
by echatellier＠users.forge.codelutin.com May 28, 2013

May 28, 2013

Author: echatellier Date: 2013-05-28 12:15:32 +0200 (Tue, 28 May 2013) New Revision: 232 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/232 Log: Hide menu on mouse out Modified: trunk/cantharella.web/src/main/webapp/js/slidemenu.js Modified: trunk/cantharella.web/src/main/webapp/js/slidemenu.js =================================================================== --- trunk/cantharella.web/src/main/webapp/js/slidemenu.js 2013-05-27 08:18:51 UTC (rev 231) +++ trunk/cantharella.web/src/main/webapp/js/slidemenu.js 2013-05-28 10:15:32 UTC (rev 232) @@ -4,7 +4,7 @@ * $Id$ * $HeadURL$ * %% - * Copyright (C) 2009 - 2012 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) + * Copyright (C) 2009 - 2013 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU Affero General Public License as published by @@ -21,7 +21,7 @@ * #L% */ var slideMenu=function(){ - var sp,st,t,m,sa,l,w,sw,ot; + var sp,st,t,m,sa,l,w,sw,ot,ssl; return{ build:function(sm,sw,mt,s,sl,h){ sp=s; st=sw; t=mt; @@ -30,9 +30,13 @@ l=sa.length; w=m.offsetWidth; sw=w/l; ot=Math.floor((w-st)/(l-1)); var i=0; for(i;i<l;i++){x=sa[i]; x.style.width=sw+'px'; this.timer(x)} - if(sl!=null){m.timer=setInterval(function(){slideMenu.slide(sa[sl-1])},t)} + if(sl!=null){ssl=sl;m.timer=setInterval(function(){slideMenu.slide(sa[sl-1])},t)} }, - timer:function(s){s.onmouseover=function(){clearInterval(m.timer);m.timer=setInterval(function(){slideMenu.slide(s)},t)}}, + timer:function(s){ + s.onmouseover=function(){clearInterval(m.timer);m.timer=setInterval(function(){slideMenu.slide(s)},t)}; + s.onmouseout=function(e){clearInterval(m.timer);m.timer=setInterval(function(){slideMenu.slide(sa[ssl-1])},t)}; + }, + slide:function(s){ var cw=parseInt(s.style.width,'10'); if(cw<st){

1 0

r231 - in trunk/cantharella.web/src/main: java/nc/ird/cantharella/web/pages resources
by echatellier＠users.forge.codelutin.com May 27, 2013

May 27, 2013

Author: echatellier Date: 2013-05-27 10:18:51 +0200 (Mon, 27 May 2013) New Revision: 231 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/231 Log: Add molecule count on home page Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/HomePage.html trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/HomePage.java trunk/cantharella.web/src/main/resources/web_en.properties trunk/cantharella.web/src/main/resources/web_fr.properties Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/HomePage.html =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/HomePage.html 2013-05-27 08:17:59 UTC (rev 230) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/HomePage.html 2013-05-27 08:18:51 UTC (rev 231) @@ -103,6 +103,7 @@ <li><span wicket:id="HomePage.Statistics.Lots"/> <wicket:message key="Lots.stat" /></li> <li><span wicket:id="HomePage.Statistics.Extractions"/> <wicket:message key="Extractions.stat" /></li> <li><span wicket:id="HomePage.Statistics.Purifications"/> <wicket:message key="Purifications.stat" /></li> + <li><span wicket:id="HomePage.Statistics.Molecules"/> <wicket:message key="Molecules.stat" /></li> <li><span wicket:id="HomePage.Statistics.TestsBio"/> <wicket:message key="ResultatsTestsBio.stat" /></li> </ul> Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/HomePage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/HomePage.java 2013-05-27 08:17:59 UTC (rev 230) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/HomePage.java 2013-05-27 08:18:51 UTC (rev 231) @@ -33,11 +33,14 @@ import nc.ird.cantharella.service.services.CampagneService; import nc.ird.cantharella.service.services.ExtractionService; import nc.ird.cantharella.service.services.LotService; +import nc.ird.cantharella.service.services.MoleculeService; import nc.ird.cantharella.service.services.PersonneService; import nc.ird.cantharella.service.services.PurificationService; import nc.ird.cantharella.service.services.SpecimenService; import nc.ird.cantharella.service.services.StationService; import nc.ird.cantharella.service.services.TestBioService; +import nc.ird.cantharella.utils.BeanTools.AccessType; +import nc.ird.cantharella.utils.CollectionTools; import nc.ird.cantharella.web.pages.domain.utilisateur.ManageUtilisateurPage; import nc.ird.cantharella.web.pages.domain.utilisateur.ReadUtilisateurPage; import nc.ird.cantharella.web.pages.domain.utilisateur.RegisterPage; @@ -50,11 +53,7 @@ import nc.ird.cantharella.web.utils.models.LoadableDetachableSortableListDataProvider; import nc.ird.cantharella.web.utils.security.AuthContainer; import nc.ird.cantharella.web.utils.security.AuthRole; -import nc.ird.cantharella.utils.BeanTools.AccessType; -import nc.ird.cantharella.utils.CollectionTools; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; import org.apache.wicket.MarkupContainer; import org.apache.wicket.ajax.AjaxRequestTarget; import org.apache.wicket.ajax.markup.html.AjaxFallbackLink; @@ -73,6 +72,8 @@ import org.apache.wicket.model.Model; import org.apache.wicket.model.PropertyModel; import org.apache.wicket.spring.injection.annot.SpringBean; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; /** * Home page @@ -115,6 +116,10 @@ @SpringBean private PurificationService purificationService; + /** Service : molecule */ + @SpringBean + private MoleculeService moleculeService; + /** Service : test biologique */ @SpringBean private TestBioService testBioService; @@ -239,6 +244,8 @@ .countExtractions()))); userContent.add(new Label(getResource() + ".Statistics.Purifications", String.valueOf(purificationService .countPurifications()))); + userContent.add(new Label(getResource() + ".Statistics.Molecules", String.valueOf(moleculeService + .countMolecules()))); userContent.add(new Label(getResource() + ".Statistics.TestsBio", String.valueOf(testBioService .countResultatsTestsBio()))); Modified: trunk/cantharella.web/src/main/resources/web_en.properties =================================================================== --- trunk/cantharella.web/src/main/resources/web_en.properties 2013-05-27 08:17:59 UTC (rev 230) +++ trunk/cantharella.web/src/main/resources/web_en.properties 2013-05-27 08:18:51 UTC (rev 231) @@ -4,7 +4,7 @@ # $Id$ # $HeadURL$ # %% -# Copyright (C) 2009 - 2012 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) +# Copyright (C) 2009 - 2013 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) # %% # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU Affero General Public License as published by @@ -66,6 +66,7 @@ Lots.stat=Samples Extractions.stat=Extractions Purifications.stat=Purifications +Molecules.stat=Molecules ResultatsTestsBio.stat=Bioassay results Modified: trunk/cantharella.web/src/main/resources/web_fr.properties =================================================================== --- trunk/cantharella.web/src/main/resources/web_fr.properties 2013-05-27 08:17:59 UTC (rev 230) +++ trunk/cantharella.web/src/main/resources/web_fr.properties 2013-05-27 08:18:51 UTC (rev 231) @@ -4,7 +4,7 @@ # $Id$ # $HeadURL$ # %% -# Copyright (C) 2009 - 2012 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) +# Copyright (C) 2009 - 2013 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) # %% # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU Affero General Public License as published by @@ -65,6 +65,7 @@ Lots.stat=Lots Extractions.stat=Extractions Purifications.stat=Purifications +Molecules.stat=Molécules ResultatsTestsBio.stat=Résultats de tests biologiques

1 0

r230 - trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model
by echatellier＠users.forge.codelutin.com May 27, 2013

May 27, 2013

Author: echatellier Date: 2013-05-27 10:17:59 +0200 (Mon, 27 May 2013) New Revision: 230 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/230 Log: Add 'formuleBrute' field in index Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java 2013-05-27 08:01:35 UTC (rev 229) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java 2013-05-27 08:17:59 UTC (rev 230) @@ -94,6 +94,7 @@ /** Formule brute */ @Length(max = LENGTH_MEDIUM_TEXT) @NotEmpty + @Field private String formuleBrute; /** Masse molaire */

1 0

r229 - trunk
by echatellier＠users.forge.codelutin.com May 27, 2013

May 27, 2013

Author: echatellier Date: 2013-05-27 10:01:35 +0200 (Mon, 27 May 2013) New Revision: 229 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/229 Log: Update libs Modified: trunk/pom.xml Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2013-05-24 15:39:12 UTC (rev 228) +++ trunk/pom.xml 2013-05-27 08:01:35 UTC (rev 229) @@ -5,7 +5,7 @@ <parent> <groupId>org.nuiton</groupId> <artifactId>mavenpom4redmine</artifactId> - <version>3.4.10</version> + <version>3.4.11</version> </parent> <groupId>nc.ird</groupId> @@ -121,7 +121,7 @@ <version.commons-collections>3.2.1</version.commons-collections> <version.commons-codec>1.8</version.commons-codec> <version.postgresql>9.1-901-1.jdbc4</version.postgresql> - <version.h2>1.3.171</version.h2> + <version.h2>1.3.172</version.h2> <version.validation-api>1.1.0.Final</version.validation-api> <version.hibernate-jpa-2.0-api>1.0.1.Final</version.hibernate-jpa-2.0-api> <version.hibernate>4.2.2.Final</version.hibernate>

1 0

r228 - in trunk: cantharella.utils/src/main/java/nc/ird/cantharella/utils cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur
by echatellier＠users.forge.codelutin.com May 24, 2013

May 24, 2013

Author: echatellier Date: 2013-05-24 17:39:12 +0200 (Fri, 24 May 2013) New Revision: 228 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/228 Log: Add document mamanagement for User (same as personne) Modified: trunk/cantharella.utils/src/main/java/nc/ird/cantharella/utils/BeanTools.java trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ManageUtilisateurPage.html trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ManageUtilisateurPage.java trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ReadUtilisateurPage.html trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ReadUtilisateurPage.java Modified: trunk/cantharella.utils/src/main/java/nc/ird/cantharella/utils/BeanTools.java =================================================================== --- trunk/cantharella.utils/src/main/java/nc/ird/cantharella/utils/BeanTools.java 2013-05-24 15:38:34 UTC (rev 227) +++ trunk/cantharella.utils/src/main/java/nc/ird/cantharella/utils/BeanTools.java 2013-05-24 15:39:12 UTC (rev 228) @@ -307,7 +307,8 @@ switch (accessType) { case GETTER: try { - PropertyDescriptor prodDesc = new PropertyDescriptor(property, bean.getClass(), "is" + StringUtils.capitalize(property), null); + PropertyDescriptor prodDesc = new PropertyDescriptor(property, bean.getClass(), "is" + + StringUtils.capitalize(property), null); Method method = prodDesc.getReadMethod(); value = method.invoke(bean); } catch (RuntimeException e) { Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ManageUtilisateurPage.html =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ManageUtilisateurPage.html 2013-05-24 15:38:34 UTC (rev 227) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ManageUtilisateurPage.html 2013-05-24 15:39:12 UTC (rev 228) @@ -77,6 +77,8 @@ </fieldset> + <wicket:panel wicket:id="ManageListDocumentsPanel" /> + <div class="actions"> <input type="submit" wicket:message="value:Submit" wicket:id="Update" /> <input type="submit" wicket:message="value:Submit" wicket:id="Valid" /> Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ManageUtilisateurPage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ManageUtilisateurPage.java 2013-05-24 15:38:34 UTC (rev 227) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ManageUtilisateurPage.java 2013-05-24 15:39:12 UTC (rev 228) @@ -45,6 +45,7 @@ import nc.ird.cantharella.utils.BeanTools.AccessType; import nc.ird.cantharella.utils.CollectionTools; import nc.ird.cantharella.web.pages.TemplatePage; +import nc.ird.cantharella.web.pages.domain.document.panel.ManageListDocumentsPanel; import nc.ird.cantharella.web.pages.domain.personne.panels.ManagePersonnePanel; import nc.ird.cantharella.web.pages.model.ManageUtilisateurModel; import nc.ird.cantharella.web.utils.CallerPage; @@ -148,6 +149,7 @@ */ public ManageUtilisateurPage(Integer idPersonne, final CallerPage callerPage) { super(ManageUtilisateurPage.class); + final CallerPage currentPage = new CallerPage(this); // Initialisation des modèles try { @@ -346,6 +348,11 @@ updateAvailableCampagnes(); formView.add(campagnesContainer); + // add list document panel + ManageListDocumentsPanel manageListDocumentsPanel = new ManageListDocumentsPanel("ManageListDocumentsPanel", + utilisateurModel, currentPage); + formView.add(manageListDocumentsPanel); + // Action : mise à jour de l'utilisateur Button updateButton = new SubmittableButton(ACTION_UPDATE, new SubmittableButtonEvents() { @Override Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ReadUtilisateurPage.html =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ReadUtilisateurPage.html 2013-05-24 15:38:34 UTC (rev 227) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ReadUtilisateurPage.html 2013-05-24 15:39:12 UTC (rev 228) @@ -44,7 +44,9 @@ <legend><wicket:message key="ManageUtilisateurPage.Authorizations" /></legend> <wicket:panel wicket:id="ReadDroitsUtilisateurPanel" /> </fieldset> - + + <wicket:panel wicket:id="ReadListDocumentsPanel" /> + <form wicket:id="Form"> <div class="actions"> <a class="edit" wicket:id="ReadUtilisateurPage.Personne.Update" wicket:message="title:Update"> Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ReadUtilisateurPage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ReadUtilisateurPage.java 2013-05-24 15:38:34 UTC (rev 227) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/utilisateur/ReadUtilisateurPage.java 2013-05-24 15:39:12 UTC (rev 228) @@ -28,6 +28,7 @@ import nc.ird.cantharella.data.model.Utilisateur.TypeDroit; import nc.ird.cantharella.service.services.PersonneService; import nc.ird.cantharella.web.pages.TemplatePage; +import nc.ird.cantharella.web.pages.domain.document.panel.ReadListDocumentsPanel; import nc.ird.cantharella.web.pages.domain.personne.panels.ReadPersonnePanel; import nc.ird.cantharella.web.pages.domain.utilisateur.panels.ReadDroitsUtilisateurPanel; import nc.ird.cantharella.web.utils.CallerPage; @@ -104,6 +105,11 @@ autorizationsFieldset.add(new ReadDroitsUtilisateurPanel("ReadDroitsUtilisateurPanel", utilisateurModel)); add(autorizationsFieldset); + // add list document panel + ReadListDocumentsPanel readListDocumentsPanel = new ReadListDocumentsPanel("ReadListDocumentsPanel", + utilisateurModel, currentPage); + add(readListDocumentsPanel); + // Action : mise à jour (redirection vers le formulaire) Link<Utilisateur> updateLink = new Link<Utilisateur>(getResource() + ".Personne.Update", utilisateurModel) { @Override

1 0

r227 - trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model
by echatellier＠users.forge.codelutin.com May 24, 2013

May 24, 2013

Author: echatellier Date: 2013-05-24 17:38:34 +0200 (Fri, 24 May 2013) New Revision: 227 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/227 Log: Fix lazy problems during hibernate search indexing Add some missing field indexing Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Extraction.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Lot.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/MethodeExtraction.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/MethodePurification.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Partie.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Purification.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Specimen.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Station.java Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Extraction.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Extraction.java 2013-05-24 15:37:24 UTC (rev 226) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Extraction.java 2013-05-24 15:38:34 UTC (rev 227) @@ -91,6 +91,7 @@ /** Méthode pour l'extraction **/ @NotNull @ManyToOne(fetch = FetchType.EAGER, optional = false) + @IndexedEmbedded private MethodeExtraction methode; /** Date de la manip */ @@ -119,7 +120,6 @@ /** Créateur */ @NotNull @ManyToOne(fetch = FetchType.LAZY, optional = false) - @IndexedEmbedded private Personne createur; /** Extraits produits par l'extraction */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Lot.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Lot.java 2013-05-24 15:37:24 UTC (rev 226) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Lot.java 2013-05-24 15:38:34 UTC (rev 227) @@ -101,7 +101,6 @@ /** createur */ @NotNull @ManyToOne(fetch = FetchType.LAZY, optional = false) - @IndexedEmbedded private Personne createur; /** Date */ @@ -141,6 +140,7 @@ /** Partie */ @ManyToOne(fetch = FetchType.EAGER, optional = true) + @IndexedEmbedded private Partie partie; /** Droits attribués aux personnes */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/MethodeExtraction.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/MethodeExtraction.java 2013-05-24 15:37:24 UTC (rev 226) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/MethodeExtraction.java 2013-05-24 15:38:34 UTC (rev 227) @@ -27,6 +27,7 @@ import java.util.List; import javax.persistence.Column; +import javax.persistence.Embeddable; import javax.persistence.Entity; import javax.persistence.FetchType; import javax.persistence.GeneratedValue; @@ -40,6 +41,7 @@ import org.hibernate.annotations.Cascade; import org.hibernate.annotations.CascadeType; import org.hibernate.annotations.Type; +import org.hibernate.search.annotations.Field; import org.hibernate.validator.constraints.Length; import org.hibernate.validator.constraints.NotEmpty; @@ -49,6 +51,7 @@ * @author Adrien Cheype */ @Entity +@Embeddable public class MethodeExtraction extends AbstractModel implements Comparable<MethodeExtraction> { /** Id de la méthode */ @@ -60,6 +63,7 @@ @Length(max = LENGTH_MEDIUM_TEXT) @Column(unique = true) @NotEmpty + @Field private String nom; /** Description de la méthode */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/MethodePurification.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/MethodePurification.java 2013-05-24 15:37:24 UTC (rev 226) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/MethodePurification.java 2013-05-24 15:38:34 UTC (rev 227) @@ -27,6 +27,7 @@ import java.util.List; import javax.persistence.Column; +import javax.persistence.Embeddable; import javax.persistence.Entity; import javax.persistence.FetchType; import javax.persistence.GeneratedValue; @@ -41,6 +42,7 @@ import org.hibernate.annotations.Cascade; import org.hibernate.annotations.CascadeType; import org.hibernate.annotations.Type; +import org.hibernate.search.annotations.Field; import org.hibernate.validator.constraints.Length; import org.hibernate.validator.constraints.NotEmpty; @@ -49,6 +51,7 @@ * @author Adrien Cheype */ @Entity +@Embeddable public class MethodePurification extends AbstractModel implements Comparable<MethodePurification> { /** Id de la méthode */ @@ -60,6 +63,7 @@ @Length(max = LENGTH_MEDIUM_TEXT) @Column(unique = true) @NotEmpty + @Field private String nom; /** Description de la méthode */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java 2013-05-24 15:37:24 UTC (rev 226) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java 2013-05-24 15:38:34 UTC (rev 227) @@ -130,7 +130,6 @@ /** Créateur */ @NotNull @ManyToOne(fetch = FetchType.LAZY, optional = false) - @IndexedEmbedded private Personne createur; /** Produit utilisé obtenir le résultat */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Partie.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Partie.java 2013-05-24 15:37:24 UTC (rev 226) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Partie.java 2013-05-24 15:38:34 UTC (rev 227) @@ -23,6 +23,7 @@ package nc.ird.cantharella.data.model; import javax.persistence.Column; +import javax.persistence.Embeddable; import javax.persistence.Entity; import javax.persistence.GeneratedValue; import javax.persistence.Id; @@ -31,6 +32,7 @@ import nc.ird.cantharella.data.model.utils.AbstractModel; import org.apache.commons.beanutils.BeanComparator; +import org.hibernate.search.annotations.Field; import org.hibernate.validator.constraints.Length; import org.hibernate.validator.constraints.NotEmpty; @@ -41,6 +43,7 @@ */ @Entity @Table +@Embeddable public class Partie extends AbstractModel implements Comparable<Partie> { /** Id de la partie */ @@ -52,6 +55,7 @@ @Length(max = LENGTH_MEDIUM_TEXT) @NotEmpty @Column(unique = true) + @Field private String nom; /** {@inheritDoc} */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Purification.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Purification.java 2013-05-24 15:37:24 UTC (rev 226) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Purification.java 2013-05-24 15:38:34 UTC (rev 227) @@ -98,6 +98,7 @@ /** Méthode pour la purification **/ @NotNull @ManyToOne(fetch = FetchType.EAGER, optional = false) + @IndexedEmbedded private MethodePurification methode; /** Paramètres qui caractérisent la méthode pour cette purification */ @@ -135,7 +136,6 @@ /** Créateur */ @NotNull @ManyToOne(fetch = FetchType.LAZY, optional = false) - @IndexedEmbedded private Personne createur; /** Fractions produites par la purification */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Specimen.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Specimen.java 2013-05-24 15:37:24 UTC (rev 226) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Specimen.java 2013-05-24 15:38:34 UTC (rev 227) @@ -166,7 +166,6 @@ /** Créateur */ @NotNull @ManyToOne(fetch = FetchType.LAZY, optional = false) - @IndexedEmbedded private Personne createur; /** Attached documents. */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Station.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Station.java 2013-05-24 15:37:24 UTC (rev 226) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Station.java 2013-05-24 15:38:34 UTC (rev 227) @@ -100,7 +100,6 @@ /** Créateur */ @NotNull @ManyToOne(fetch = FetchType.LAZY, optional = false) - @IndexedEmbedded private Personne createur; /** Localité */ @@ -128,7 +127,10 @@ /** Stations */ @NotNull - @ManyToMany(mappedBy = "stations", fetch = FetchType.LAZY) + @ManyToMany(mappedBy = "stations", fetch = FetchType.EAGER) + // FIXME echatellier 20130524 EAGER for hibernate search (no other simple solution) + @Fetch(value = FetchMode.SUBSELECT) + // see HHH-1718 @IndexedEmbedded private List<Campagne> campagnes;

1 0

r226 - trunk
by echatellier＠users.forge.codelutin.com May 24, 2013

May 24, 2013

Author: echatellier Date: 2013-05-24 17:37:24 +0200 (Fri, 24 May 2013) New Revision: 226 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/226 Log: Update hibernate Modified: trunk/pom.xml Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2013-05-23 12:24:45 UTC (rev 225) +++ trunk/pom.xml 2013-05-24 15:37:24 UTC (rev 226) @@ -124,7 +124,7 @@ <version.h2>1.3.171</version.h2> <version.validation-api>1.1.0.Final</version.validation-api> <version.hibernate-jpa-2.0-api>1.0.1.Final</version.hibernate-jpa-2.0-api> - <version.hibernate>4.2.1.Final</version.hibernate> + <version.hibernate>4.2.2.Final</version.hibernate> <version.hibernate-validator>5.0.1.Final</version.hibernate-validator> <version.hibernate-search>4.2.0.Final</version.hibernate-search> <version.lucene>3.6.2</version.lucene>

1 0

r225 - trunk/cantharella.utils/src/main/java/nc/ird/cantharella/utils
by echatellier＠users.forge.codelutin.com May 23, 2013

May 23, 2013

Author: echatellier Date: 2013-05-23 14:24:45 +0200 (Thu, 23 May 2013) New Revision: 225 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/225 Log: Fix NPE when sort property become null Modified: trunk/cantharella.utils/src/main/java/nc/ird/cantharella/utils/BeanTools.java Modified: trunk/cantharella.utils/src/main/java/nc/ird/cantharella/utils/BeanTools.java =================================================================== --- trunk/cantharella.utils/src/main/java/nc/ird/cantharella/utils/BeanTools.java 2013-05-21 12:36:43 UTC (rev 224) +++ trunk/cantharella.utils/src/main/java/nc/ird/cantharella/utils/BeanTools.java 2013-05-23 12:24:45 UTC (rev 225) @@ -25,6 +25,7 @@ import java.beans.PropertyDescriptor; import java.lang.annotation.Annotation; import java.lang.reflect.Field; +import java.lang.reflect.Method; import java.lang.reflect.Modifier; import java.util.ArrayList; import java.util.Arrays; @@ -61,9 +62,6 @@ /** Error message for field not found in a class */ private static final String FIELD = "Argument of type %s must have an accessible %s property"; - /** Parameters */ - private static final Object[] PARAMETERS = new Object[0]; - /** * Equals method * @param thiz First object ("this", not null) @@ -309,8 +307,9 @@ switch (accessType) { case GETTER: try { - value = new PropertyDescriptor(property, bean.getClass(), "is" + StringUtils.capitalize(property), null) - .getReadMethod().invoke(bean, PARAMETERS); + PropertyDescriptor prodDesc = new PropertyDescriptor(property, bean.getClass(), "is" + StringUtils.capitalize(property), null); + Method method = prodDesc.getReadMethod(); + value = method.invoke(bean); } catch (RuntimeException e) { throw e; } catch (Exception e) { @@ -346,7 +345,9 @@ List<String> beanNames = createAccessBeanList(pathToProperty); Object curBean = bean; for (String beanName : beanNames) { - curBean = BeanTools.getValue(curBean, AccessType.GETTER, beanName); + if (curBean != null) { + curBean = BeanTools.getValue(curBean, AccessType.GETTER, beanName); + } } return curBean; }

1 0

r224 - in trunk: cantharella.data cantharella.data/src/main/java/nc/ird/cantharella/data/config cantharella.data/src/main/java/nc/ird/cantharella/data/model cantharella.data/src/main/java/nc/ird/cantharella/data/model/search cantharella.data/src/main/resources cantharella.data/src/main/resources/META-INF/services cantharella.service/src/main/java/nc/ird/cantharella/service/services cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl cantharella.web/src/main/java/
by echatellier＠users.forge.codelutin.com May 21, 2013

May 21, 2013

Author: echatellier Date: 2013-05-21 14:36:43 +0200 (Tue, 21 May 2013) New Revision: 224 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/224 Log: fixes #2353: Moteur de recherche: Test Securit?\195?\169 > resultats sur lesquels je n'ai pas les droits... fixes #2354: Moteur de recherche: manque les r?\195?\169sultats pour Lots fixes #2355: Moteur de recherche: Pb recherche par pays fixes #2357: Moteur de recherche: Mol?\195?\169cules des r?\195?\169sultats en trop fixes #2358: Moteur de Recherche: Pb recherche par nom de Campagne fixes #2359: Moteur de recherche: recherche par pays: R?\195?\169sultats incomplets en Utilisateur / Admin fixes #2363: Gestion des droits: Pb pour donner des droits sur un lot en particulier Added: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaAnalyzer.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaStemFilter.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaStemmer.java Removed: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/config/HibernateSearchIntegrator.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CampagnePersonneBridge.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/IndexEventListener.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/LotPersonneBridge.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/UtilisateurSearchFilter.java Modified: trunk/cantharella.data/pom.xml trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/config/DataContext.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Campagne.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/CampagnePersonneDroits.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Extraction.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Lot.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/LotPersonneDroits.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Produit.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Purification.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/ResultatTestBio.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Specimen.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Station.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/TestBio.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/ProduitBridge.java trunk/cantharella.data/src/main/resources/META-INF/services/org.hibernate.integrator.spi.Integrator trunk/cantharella.data/src/main/resources/cantharella.conf trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/DocumentService.java trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/extraction/ListExtractionsPage.java trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/station/ListStationsPage.java trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/testBio/ListTestsBioPage.java trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/utils/panels/PropertyLabelLinkProduitPanel.java Modified: trunk/cantharella.data/pom.xml =================================================================== --- trunk/cantharella.data/pom.xml 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/pom.xml 2013-05-21 12:36:43 UTC (rev 224) @@ -118,12 +118,12 @@ <artifactId>hibernate-search-engine</artifactId> </dependency> <dependency> - <groupId>org.hibernate</groupId> - <artifactId>hibernate-search-orm</artifactId> + <groupId>org.apache.lucene</groupId> + <artifactId>lucene-core</artifactId> </dependency> <dependency> <groupId>org.apache.lucene</groupId> - <artifactId>lucene-core</artifactId> + <artifactId>lucene-analyzers</artifactId> </dependency> <dependency> <groupId>c3p0</groupId> Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/config/DataContext.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/config/DataContext.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/config/DataContext.java 2013-05-21 12:36:43 UTC (rev 224) @@ -38,6 +38,7 @@ import javax.validation.ValidatorFactory; import nc.ird.cantharella.data.exceptions.UnexpectedException; +import nc.ird.cantharella.data.model.search.CantharellaAnalyzer; import nc.ird.cantharella.data.validation.utils.ModelValidator; import nc.ird.cantharella.data.validation.utils.ModelValidatorImpl; import nc.ird.cantharella.utils.CantharellaConfig; @@ -313,8 +314,10 @@ // Hibernate search hibernateProperties.setProperty("hibernate.search.default.directory_provider", "filesystem"); hibernateProperties.setProperty("hibernate.search.default.indexBase", hibernateSearchIndexBase); - hibernateProperties.setProperty("hibernate.search.analyzer", hibernateSearchAnalyzer); - hibernateProperties.setProperty("hibernate.search.enable_dirty_check", "false"); + hibernateProperties.setProperty(org.hibernate.search.Environment.ANALYZER_CLASS, CantharellaAnalyzer.class + .getName()); + hibernateProperties.setProperty(org.hibernate.search.Environment.ENABLE_DIRTY_CHECK, "false"); + hibernateProperties.setProperty(org.hibernate.search.Environment.LUCENE_MATCH_VERSION, "LUCENE_36"); // Hibernate: Session //hibernateProperties.setProperty("hibernate.current_session_context_class", "thread"); //hibernateProperties.setProperty(Environment.JTA_PLATFORM, "hibernate.transaction.factory_class", SpringTransactionFactory.class.getName()); Deleted: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/config/HibernateSearchIntegrator.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/config/HibernateSearchIntegrator.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/config/HibernateSearchIntegrator.java 2013-05-21 12:36:43 UTC (rev 224) @@ -1,142 +0,0 @@ -package nc.ird.cantharella.data.config; - -/* - * #%L - * Cantharella :: Data - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2009 - 2013 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see <http://www.gnu.org/licenses/>. - * #L% - */ - -import java.util.List; - -import nc.ird.cantharella.data.model.Campagne; -import nc.ird.cantharella.data.model.CampagnePersonneDroits; -import nc.ird.cantharella.data.model.Lot; -import nc.ird.cantharella.data.model.LotPersonneDroits; -import nc.ird.cantharella.data.model.search.IndexEventListener; - -import org.hibernate.Session; -import org.hibernate.cfg.Configuration; -import org.hibernate.engine.spi.SessionFactoryImplementor; -import org.hibernate.event.service.spi.EventListenerRegistry; -import org.hibernate.event.spi.EventType; -import org.hibernate.event.spi.PostDeleteEvent; -import org.hibernate.event.spi.PostDeleteEventListener; -import org.hibernate.event.spi.PostInsertEvent; -import org.hibernate.event.spi.PostInsertEventListener; -import org.hibernate.event.spi.PostUpdateEvent; -import org.hibernate.event.spi.PostUpdateEventListener; -import org.hibernate.integrator.spi.Integrator; -import org.hibernate.metamodel.source.MetadataImplementor; -import org.hibernate.search.FullTextSession; -import org.hibernate.search.Search; -import org.hibernate.service.spi.SessionFactoryServiceRegistry; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Register cantharella validator into hibernate using integrator. - * - * @author echatellier - */ -public class HibernateSearchIntegrator implements Integrator, PostDeleteEventListener, PostUpdateEventListener, - PostInsertEventListener { - - /** Logger */ - private static final Logger LOG = LoggerFactory.getLogger(HibernateSearchIntegrator.class); - - /** {@inheritDoc} */ - @Override - public void integrate(Configuration configuration, SessionFactoryImplementor sessionFactory, - SessionFactoryServiceRegistry serviceRegistry) { - if (LOG.isDebugEnabled()) { - LOG.debug("Registering custom search listener into hibernate"); - } - - // register validator - EventListenerRegistry eventRegistry = serviceRegistry.getService(EventListenerRegistry.class); - - IndexEventListener listener = new IndexEventListener(IndexEventListener.Installation.SINGLE_INSTANCE); - eventRegistry.prependListeners(EventType.POST_DELETE, listener); - eventRegistry.prependListeners(EventType.POST_UPDATE, listener); - eventRegistry.prependListeners(EventType.POST_INSERT, listener); - listener.initialize(configuration); - } - - /** {@inheritDoc} */ - @Override - public void integrate(MetadataImplementor metadata, SessionFactoryImplementor sessionFactory, - SessionFactoryServiceRegistry serviceRegistry) { - integrate((Configuration) null, sessionFactory, serviceRegistry); - } - - /** {@inheritDoc} */ - @Override - public void disintegrate(SessionFactoryImplementor sessionFactory, SessionFactoryServiceRegistry serviceRegistry) { - - } - - /** {@inheritDoc} */ - @Override - public void onPostInsert(PostInsertEvent event) { - Object entity = event.getEntity(); - LOG.debug("[Event] onPostInsert on : " + entity); - reIndexEntity(event.getSession(), event.getEntity()); - } - - /** {@inheritDoc} */ - @Override - public void onPostUpdate(PostUpdateEvent event) { - Object entity = event.getEntity(); - LOG.debug("[Event] onPostUpdate on : " + entity); - reIndexEntity(event.getSession(), event.getEntity()); - } - - /** {@inheritDoc} */ - @Override - public void onPostDelete(PostDeleteEvent event) { - Object entity = event.getEntity(); - LOG.debug("[Event] onPostDelete on : " + entity); - reIndexEntity(event.getSession(), event.getEntity()); - } - - /** - * Reindex entity associated with event entity depending on - * entity type. - * - * @param session current session - * @param entity current entity - */ - protected void reIndexEntity(Session session, Object entity) { - if (entity instanceof LotPersonneDroits) { - Lot lot = ((LotPersonneDroits) entity).getId().getPk1(); - lot = (Lot) session.merge(lot); - FullTextSession fullTextSession = Search.getFullTextSession(session); - fullTextSession.index(lot); - } else if (entity instanceof CampagnePersonneDroits) { - Campagne campagne = ((CampagnePersonneDroits) entity).getId().getPk1(); - campagne = (Campagne) session.merge(campagne); - FullTextSession fullTextSession = Search.getFullTextSession(session); - List<Lot> lots = campagne.getLots(); - for (Lot lot : lots) { - fullTextSession.index(lot); - } - } - } -} Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Campagne.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Campagne.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Campagne.java 2013-05-21 12:36:43 UTC (rev 224) @@ -52,12 +52,9 @@ import org.hibernate.annotations.CascadeType; import org.hibernate.annotations.Fetch; import org.hibernate.annotations.FetchMode; -import org.hibernate.annotations.LazyCollection; -import org.hibernate.annotations.LazyCollectionOption; import org.hibernate.annotations.Type; import org.hibernate.search.annotations.ContainedIn; import org.hibernate.search.annotations.Field; -import org.hibernate.search.annotations.IndexedEmbedded; import org.hibernate.search.annotations.Store; import org.hibernate.validator.constraints.Length; import org.hibernate.validator.constraints.NotEmpty; @@ -142,9 +139,6 @@ /** Droits personnes */ @NotNull @OneToMany(mappedBy = "id.pk1", fetch = FetchType.LAZY) - @IndexedEmbedded - // FIXME echatellier 20130320 EAGER du to HSEARCH-1260 bug, but should be lazy fetch - @LazyCollection(LazyCollectionOption.FALSE) private List<CampagnePersonneDroits> personnesDroits; /** Stations prospectées **/ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/CampagnePersonneDroits.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/CampagnePersonneDroits.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/CampagnePersonneDroits.java 2013-05-21 12:36:43 UTC (rev 224) @@ -28,15 +28,9 @@ import javax.persistence.Table; import javax.validation.constraints.NotNull; -import nc.ird.cantharella.data.model.search.CampagnePersonneBridge; import nc.ird.cantharella.data.model.utils.AbstractModel; import nc.ird.cantharella.data.model.utils.CompositeId; -import org.hibernate.search.annotations.ClassBridge; -import org.hibernate.search.annotations.Index; -import org.hibernate.search.annotations.IndexedEmbedded; -import org.hibernate.search.annotations.Store; - /** * Modèle : droits d'une personne sur une campagne * @author Mickael Tricot @@ -44,7 +38,6 @@ @Entity @Table @Embeddable -@ClassBridge(name = "campagne", index = Index.YES, store = Store.YES, impl = CampagnePersonneBridge.class) public class CampagnePersonneDroits extends AbstractModel { /** Droits */ @@ -54,7 +47,6 @@ /** ID */ @EmbeddedId @NotNull - @IndexedEmbedded private CompositeId<Campagne, Personne> id; /** Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Extraction.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Extraction.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Extraction.java 2013-05-21 12:36:43 UTC (rev 224) @@ -45,7 +45,6 @@ import nc.ird.cantharella.data.config.DataContext; import nc.ird.cantharella.data.model.comparators.ExtraitsOfExtractionComp; -import nc.ird.cantharella.data.model.search.UtilisateurSearchFilter; import nc.ird.cantharella.data.model.utils.AbstractModel; import nc.ird.cantharella.data.model.utils.DocumentAttachable; @@ -56,11 +55,8 @@ import org.hibernate.annotations.Fetch; import org.hibernate.annotations.FetchMode; import org.hibernate.annotations.Type; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.ContainedIn; import org.hibernate.search.annotations.Field; -import org.hibernate.search.annotations.FullTextFilterDef; -import org.hibernate.search.annotations.FullTextFilterDefs; import org.hibernate.search.annotations.Indexed; import org.hibernate.search.annotations.IndexedEmbedded; import org.hibernate.search.annotations.Store; @@ -73,7 +69,6 @@ */ @Entity @Indexed -@FullTextFilterDefs( { @FullTextFilterDef(name = "utilisateur-Extraction", impl = UtilisateurSearchFilter.class) }) public class Extraction extends AbstractModel implements Comparable<Extraction>, DocumentAttachable { /** Id de l'extraction */ @@ -85,7 +80,7 @@ @Length(max = LENGTH_MEDIUM_TEXT) @Column(unique = true) @NotEmpty - @Field(store = Store.YES, analyze = Analyze.NO) + @Field(store = Store.YES) private String ref; /** Manipulateur */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Lot.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Lot.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Lot.java 2013-05-21 12:36:43 UTC (rev 224) @@ -46,7 +46,6 @@ import javax.validation.constraints.Past; import nc.ird.cantharella.data.config.DataContext; -import nc.ird.cantharella.data.model.search.UtilisateurSearchFilter; import nc.ird.cantharella.data.model.utils.AbstractModel; import nc.ird.cantharella.data.model.utils.DocumentAttachable; @@ -55,13 +54,9 @@ import org.hibernate.annotations.CascadeType; import org.hibernate.annotations.Fetch; import org.hibernate.annotations.FetchMode; -import org.hibernate.annotations.LazyCollection; -import org.hibernate.annotations.LazyCollectionOption; import org.hibernate.annotations.Type; import org.hibernate.search.annotations.ContainedIn; import org.hibernate.search.annotations.Field; -import org.hibernate.search.annotations.FullTextFilterDef; -import org.hibernate.search.annotations.FullTextFilterDefs; import org.hibernate.search.annotations.Indexed; import org.hibernate.search.annotations.IndexedEmbedded; import org.hibernate.search.annotations.Store; @@ -77,7 +72,6 @@ @Table @Indexed @Embeddable -@FullTextFilterDefs( { @FullTextFilterDef(name = "utilisateur-Lot", impl = UtilisateurSearchFilter.class) }) public class Lot extends AbstractModel implements Comparable<Lot>, DocumentAttachable { /** ID */ @@ -152,9 +146,6 @@ /** Droits attribués aux personnes */ @OneToMany(mappedBy = "id.pk1", fetch = FetchType.LAZY) @NotNull - @IndexedEmbedded - // FIXME echatellier 20130320 EAGER du to HSEARCH-1260 bug, but should be lazy fetch - @LazyCollection(LazyCollectionOption.FALSE) private List<LotPersonneDroits> personnesDroits; /** Spécimen source */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/LotPersonneDroits.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/LotPersonneDroits.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/LotPersonneDroits.java 2013-05-21 12:36:43 UTC (rev 224) @@ -28,15 +28,9 @@ import javax.persistence.Table; import javax.validation.constraints.NotNull; -import nc.ird.cantharella.data.model.search.LotPersonneBridge; import nc.ird.cantharella.data.model.utils.AbstractModel; import nc.ird.cantharella.data.model.utils.CompositeId; -import org.hibernate.search.annotations.ClassBridge; -import org.hibernate.search.annotations.Index; -import org.hibernate.search.annotations.IndexedEmbedded; -import org.hibernate.search.annotations.Store; - /** * Modèle : droits d'une personne sur un lot * @author Mickael Tricot @@ -44,7 +38,6 @@ @Entity @Table @Embeddable -@ClassBridge(name = "lot", index = Index.YES, store = Store.YES, impl = LotPersonneBridge.class) public class LotPersonneDroits extends AbstractModel { /** Droits */ @@ -54,7 +47,6 @@ /** ID */ @EmbeddedId @NotNull - @IndexedEmbedded private CompositeId<Lot, Personne> id; /** Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Produit.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Produit.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Produit.java 2013-05-21 12:36:43 UTC (rev 224) @@ -43,7 +43,6 @@ import nc.ird.cantharella.data.model.utils.AbstractModel; import org.apache.commons.beanutils.BeanComparator; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.ClassBridge; import org.hibernate.search.annotations.ContainedIn; import org.hibernate.search.annotations.Field; @@ -70,7 +69,7 @@ @Length(max = LENGTH_MEDIUM_TEXT) @NotEmpty @Column(unique = true) - @Field(store = Store.YES, analyze = Analyze.NO) + @Field(store = Store.YES) private String ref; /** Masse obtenue pour le produit **/ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Purification.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Purification.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Purification.java 2013-05-21 12:36:43 UTC (rev 224) @@ -46,7 +46,6 @@ import nc.ird.cantharella.data.config.DataContext; import nc.ird.cantharella.data.model.comparators.FractionsOfPurificationComp; -import nc.ird.cantharella.data.model.search.UtilisateurSearchFilter; import nc.ird.cantharella.data.model.utils.AbstractModel; import nc.ird.cantharella.data.model.utils.DocumentAttachable; import nc.ird.cantharella.utils.AssertTools; @@ -58,11 +57,8 @@ import org.hibernate.annotations.Fetch; import org.hibernate.annotations.FetchMode; import org.hibernate.annotations.Type; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.ContainedIn; import org.hibernate.search.annotations.Field; -import org.hibernate.search.annotations.FullTextFilterDef; -import org.hibernate.search.annotations.FullTextFilterDefs; import org.hibernate.search.annotations.Indexed; import org.hibernate.search.annotations.IndexedEmbedded; import org.hibernate.search.annotations.Store; @@ -75,7 +71,6 @@ */ @Entity @Indexed -@FullTextFilterDefs( { @FullTextFilterDef(name = "utilisateur-Purification", impl = UtilisateurSearchFilter.class) }) public class Purification extends AbstractModel implements Comparable<Purification>, DocumentAttachable { /** Id de la purification */ @@ -87,7 +82,7 @@ @Length(max = LENGTH_MEDIUM_TEXT) @Column(unique = true) @NotEmpty - @Field(store = Store.YES, analyze = Analyze.NO) + @Field(store = Store.YES) private String ref; /** Manipulateur */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/ResultatTestBio.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/ResultatTestBio.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/ResultatTestBio.java 2013-05-21 12:36:43 UTC (rev 224) @@ -38,7 +38,6 @@ import javax.validation.constraints.NotNull; import nc.ird.cantharella.data.config.DataContext; -import nc.ird.cantharella.data.model.search.UtilisateurSearchFilter; import nc.ird.cantharella.data.model.utils.AbstractModel; import nc.ird.cantharella.data.model.utils.DocumentAttachable; import nc.ird.cantharella.data.validation.CollectionUniqueField; @@ -47,8 +46,6 @@ import org.apache.commons.beanutils.BeanComparator; import org.apache.commons.collections.comparators.ComparatorChain; import org.hibernate.annotations.Index; -import org.hibernate.search.annotations.FullTextFilterDef; -import org.hibernate.search.annotations.FullTextFilterDefs; import org.hibernate.search.annotations.Indexed; import org.hibernate.search.annotations.IndexedEmbedded; import org.hibernate.validator.constraints.Length; @@ -65,7 +62,6 @@ @Entity @CollectionUniqueField(fieldName = "repere", pathToCollection = "testBio.resultats") @Indexed -@FullTextFilterDefs( { @FullTextFilterDef(name = "utilisateur-ResultatTestBio", impl = UtilisateurSearchFilter.class) }) public class ResultatTestBio extends AbstractModel implements Cloneable, Comparable<ResultatTestBio>, DocumentAttachable { Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Specimen.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Specimen.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Specimen.java 2013-05-21 12:36:43 UTC (rev 224) @@ -43,7 +43,6 @@ import javax.persistence.TemporalType; import javax.validation.constraints.NotNull; -import nc.ird.cantharella.data.model.search.UtilisateurSearchFilter; import nc.ird.cantharella.data.model.utils.AbstractModel; import nc.ird.cantharella.data.model.utils.DocumentAttachable; @@ -53,10 +52,7 @@ import org.hibernate.annotations.Fetch; import org.hibernate.annotations.FetchMode; import org.hibernate.annotations.Type; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.Field; -import org.hibernate.search.annotations.FullTextFilterDef; -import org.hibernate.search.annotations.FullTextFilterDefs; import org.hibernate.search.annotations.Indexed; import org.hibernate.search.annotations.IndexedEmbedded; import org.hibernate.search.annotations.Store; @@ -72,7 +68,6 @@ @Table @Indexed @Embeddable -@FullTextFilterDefs( { @FullTextFilterDef(name = "utilisateur-Specimen", impl = UtilisateurSearchFilter.class) }) public class Specimen extends AbstractModel implements Comparable<Specimen>, DocumentAttachable { /** @@ -104,7 +99,7 @@ @Column(unique = true) @NotEmpty @Length(max = LENGTH_TINY_TEXT) - @Field(store = Store.YES, analyze = Analyze.NO) + @Field(store = Store.YES) private String ref; /** Embranchement */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Station.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Station.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Station.java 2013-05-21 12:36:43 UTC (rev 224) @@ -39,7 +39,6 @@ import javax.persistence.Table; import javax.validation.constraints.NotNull; -import nc.ird.cantharella.data.model.search.UtilisateurSearchFilter; import nc.ird.cantharella.data.model.utils.AbstractModel; import nc.ird.cantharella.data.model.utils.DocumentAttachable; import nc.ird.cantharella.data.validation.CountryCode; @@ -56,8 +55,6 @@ import org.hibernate.annotations.Type; import org.hibernate.search.annotations.ContainedIn; import org.hibernate.search.annotations.Field; -import org.hibernate.search.annotations.FullTextFilterDef; -import org.hibernate.search.annotations.FullTextFilterDefs; import org.hibernate.search.annotations.Indexed; import org.hibernate.search.annotations.IndexedEmbedded; import org.hibernate.validator.constraints.Length; @@ -73,7 +70,6 @@ @AccessType("field") @Indexed @Embeddable -@FullTextFilterDefs( { @FullTextFilterDef(name = "utilisateur-Station", impl = UtilisateurSearchFilter.class) }) public class Station extends AbstractModel implements Cloneable, Comparable<Station>, DocumentAttachable { /** ID */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/TestBio.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/TestBio.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/TestBio.java 2013-05-21 12:36:43 UTC (rev 224) @@ -60,7 +60,6 @@ import org.hibernate.annotations.Fetch; import org.hibernate.annotations.FetchMode; import org.hibernate.annotations.Type; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.ContainedIn; import org.hibernate.search.annotations.Field; import org.hibernate.search.annotations.IndexedEmbedded; @@ -85,7 +84,7 @@ @Length(max = LENGTH_MEDIUM_TEXT) @Column(unique = true) @NotEmpty - @Field(store = Store.YES, analyze = Analyze.NO) + @Field(store = Store.YES) private String ref; /** Manipulateur */ Deleted: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CampagnePersonneBridge.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CampagnePersonneBridge.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CampagnePersonneBridge.java 2013-05-21 12:36:43 UTC (rev 224) @@ -1,68 +0,0 @@ -package nc.ird.cantharella.data.model.search; - -/* - * #%L - * Cantharella :: Data - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2010 - 2013 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see <http://www.gnu.org/licenses/>. - * #L% - */ - -import nc.ird.cantharella.data.model.Campagne; -import nc.ird.cantharella.data.model.CampagnePersonneDroits; -import nc.ird.cantharella.data.model.Personne; -import nc.ird.cantharella.data.model.utils.CompositeId; - -import org.apache.lucene.document.Document; -import org.apache.lucene.document.Field; -import org.hibernate.search.bridge.FieldBridge; -import org.hibernate.search.bridge.LuceneOptions; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Hibernate search can't index CompositeId by himself. - * - * To index right on entities, we add a field "droit.pk2" containing user - * id, meaning "this user can see this indexed document". - * - * @author Eric Chatellier - */ -public class CampagnePersonneBridge implements FieldBridge { - - /** Logger */ - private static final Logger LOG = LoggerFactory.getLogger(CampagnePersonneBridge.class); - - /** {@inheritDoc} */ - @Override - public void set(String name, Object value, Document document, LuceneOptions luceneOptions) { - - CampagnePersonneDroits campagnePersonneDroits = (CampagnePersonneDroits) value; - if (LOG.isTraceEnabled()) { - LOG.trace("Custom indexing of CampagnePersonneDroits : " - + campagnePersonneDroits.getId().getPk1().getIdCampagne() + "," - + campagnePersonneDroits.getId().getPk2().getIdPersonne()); - } - - CompositeId<Campagne, Personne> compositeId = campagnePersonneDroits.getId(); - - // commons information for all produit - document.add(new Field("droit.pk2", String.valueOf(compositeId.getPk2().getIdPersonne()), luceneOptions - .getStore(), luceneOptions.getIndex(), luceneOptions.getTermVector())); - } -} Added: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaAnalyzer.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaAnalyzer.java (rev 0) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaAnalyzer.java 2013-05-21 12:36:43 UTC (rev 224) @@ -0,0 +1,165 @@ +/* + * #%L + * Cantharella :: Data + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as published by + * the Free Software Foundation, either version 3 of the License, or + * (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + * #L% + */ +package nc.ird.cantharella.data.model.search; + +import java.io.IOException; +import java.io.Reader; +import java.util.Set; + +import org.apache.lucene.analysis.Analyzer; +import org.apache.lucene.analysis.CharArraySet; +import org.apache.lucene.analysis.KeywordMarkerFilter; +import org.apache.lucene.analysis.LowerCaseFilter; +import org.apache.lucene.analysis.StopFilter; +import org.apache.lucene.analysis.StopwordAnalyzerBase; +import org.apache.lucene.analysis.TokenStream; +import org.apache.lucene.analysis.Tokenizer; +import org.apache.lucene.analysis.WordlistLoader; +import org.apache.lucene.analysis.fr.ElisionFilter; +import org.apache.lucene.analysis.fr.FrenchLightStemFilter; +import org.apache.lucene.analysis.snowball.SnowballFilter; +import org.apache.lucene.analysis.standard.StandardAnalyzer; // for javadoc +import org.apache.lucene.analysis.standard.StandardFilter; +import org.apache.lucene.analysis.standard.StandardTokenizer; +import org.apache.lucene.util.IOUtils; +import org.apache.lucene.util.Version; + +/** + * {@link Analyzer} for French language. + * <p> + * Supports an external list of stopwords (words that + * will not be indexed at all) and an external list of exclusions (word that will + * not be stemmed, but indexed). + * A default set of stopwords is used unless an alternative list is specified, but the + * exclusion list is empty by default. + * </p> + * + * <a name="version"/> + * <p>You must specify the required {@link Version} + * compatibility when creating FrenchAnalyzer: + * <ul> + * <li> As of 3.6, FrenchLightStemFilter is used for less aggressive stemming. + * <li> As of 3.1, Snowball stemming is done with SnowballFilter, + * LowerCaseFilter is used prior to StopFilter, and ElisionFilter and + * Snowball stopwords are used by default. + * <li> As of 2.9, StopFilter preserves position + * increments + * </ul> + * + * <p><b>NOTE</b>: This class uses the same {@link Version} + * dependent settings as {@link StandardAnalyzer}.</p> + */ +public final class CantharellaAnalyzer extends StopwordAnalyzerBase { + + /** File containing default French stopwords. */ + public final static String DEFAULT_STOPWORD_FILE = "french_stop.txt"; + + /** + * Contains words that should be indexed but not stemmed. + */ + private Set<?> excltable = CharArraySet.EMPTY_SET; + + /** + * Returns an unmodifiable instance of the default stop-words set. + * @return an unmodifiable instance of the default stop-words set. + */ + public static Set<?> getDefaultStopSet() { + return DefaultSetHolder.DEFAULT_STOP_SET; + } + + @SuppressWarnings("deprecation") + private static class DefaultSetHolder { + + static final Set<?> DEFAULT_STOP_SET; + static { + try { + DEFAULT_STOP_SET = WordlistLoader.getSnowballWordSet(IOUtils.getDecodingReader(SnowballFilter.class, + DEFAULT_STOPWORD_FILE, IOUtils.CHARSET_UTF_8), Version.LUCENE_CURRENT); + } catch (IOException ex) { + // default set should always be present as it is part of the + // distribution (JAR) + throw new RuntimeException("Unable to load default stopword set"); + } + } + } + + /** + * Builds an analyzer with the default stop words ({@link #getDefaultStopSet}). + * @param matchVersion lucene match version + */ + public CantharellaAnalyzer(Version matchVersion) { + this(matchVersion, DefaultSetHolder.DEFAULT_STOP_SET); + } + + /** + * Builds an analyzer with the given stop words + * + * @param matchVersion + * lucene compatibility version + * @param stopwords + * a stopword set + */ + public CantharellaAnalyzer(Version matchVersion, Set<?> stopwords) { + this(matchVersion, stopwords, CharArraySet.EMPTY_SET); + } + + /** + * Builds an analyzer with the given stop words + * + * @param matchVersion + * lucene compatibility version + * @param stopwords + * a stopword set + * @param stemExclutionSet + * a stemming exclusion set + */ + public CantharellaAnalyzer(Version matchVersion, Set<?> stopwords, Set<?> stemExclutionSet) { + super(matchVersion, stopwords); + this.excltable = CharArraySet.unmodifiableSet(CharArraySet.copy(matchVersion, stemExclutionSet)); + } + + /** + * Creates + * {@link org.apache.lucene.analysis.ReusableAnalyzerBase.TokenStreamComponents} + * used to tokenize all the text in the provided {@link Reader}. + * + * @return {@link org.apache.lucene.analysis.ReusableAnalyzerBase.TokenStreamComponents} + * built from a {@link StandardTokenizer} filtered with + * {@link StandardFilter}, {@link ElisionFilter}, + * {@link LowerCaseFilter}, {@link StopFilter}, + * {@link KeywordMarkerFilter} if a stem exclusion set is + * provided, and {@link FrenchLightStemFilter} + */ + @Override + protected TokenStreamComponents createComponents(String fieldName, Reader reader) { + final Tokenizer source = new StandardTokenizer(matchVersion, reader); + TokenStream result = new StandardFilter(matchVersion, source); + result = new ElisionFilter(matchVersion, result); + result = new LowerCaseFilter(matchVersion, result); + result = new StopFilter(matchVersion, result, stopwords); + if (!excltable.isEmpty()) + result = new KeywordMarkerFilter(result, excltable); + result = new CantharellaStemFilter(result); + return new TokenStreamComponents(source, result); + } +} Property changes on: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaAnalyzer.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaStemFilter.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaStemFilter.java (rev 0) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaStemFilter.java 2013-05-21 12:36:43 UTC (rev 224) @@ -0,0 +1,72 @@ +/* + * #%L + * Cantharella :: Data + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as published by + * the Free Software Foundation, either version 3 of the License, or + * (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + * #L% + */ +package nc.ird.cantharella.data.model.search; + +import java.io.IOException; + +import org.apache.lucene.analysis.TokenFilter; +import org.apache.lucene.analysis.TokenStream; +import org.apache.lucene.analysis.tokenattributes.CharTermAttribute; +import org.apache.lucene.analysis.tokenattributes.KeywordAttribute; + +/** + * Custom stem filter to use {@link CantharellaStemmer} instead of lucene's + * default French Stemmer. + * + * @author Eric Chatellier + */ +public class CantharellaStemFilter extends TokenFilter { + /** Character sequence stemmer. */ + private final CantharellaStemmer stemmer = new CantharellaStemmer(); + + /** Char term attribute. */ + private final CharTermAttribute termAtt = addAttribute(CharTermAttribute.class); + + /** Keyword attribute. */ + private final KeywordAttribute keywordAttr = addAttribute(KeywordAttribute.class); + + /** + * Constructor. + * + * @param input token stream. + */ + public CantharellaStemFilter(TokenStream input) { + super(input); + } + + /** + * {@inheritDoc} + */ + @Override + public boolean incrementToken() throws IOException { + if (input.incrementToken()) { + if (!keywordAttr.isKeyword()) { + final int newlen = stemmer.stem(termAtt.buffer(), termAtt.length()); + termAtt.setLength(newlen); + } + return true; + } else { + return false; + } + } +} \ No newline at end of file Property changes on: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaStemFilter.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Added: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaStemmer.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaStemmer.java (rev 0) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaStemmer.java 2013-05-21 12:36:43 UTC (rev 224) @@ -0,0 +1,260 @@ +/* + * #%L + * Cantharella :: Data + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2012 - 2013 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as published by + * the Free Software Foundation, either version 3 of the License, or + * (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + * #L% + */ +package nc.ird.cantharella.data.model.search; + +import static org.apache.lucene.analysis.util.StemmerUtil.*; + +/** + * Light Stemmer for French. + * <p> + * This stemmer implements the "UniNE" algorithm in: + * <i>Light Stemming Approaches for the French, Portuguese, German and Hungarian Languages</i> + * Jacques Savoy + */ +public class CantharellaStemmer { + + /** + * Stem a char sequence. + * + * @param s char sequence to stem + * @param len char sequence length + * @return char sequence final length + */ + public int stem(char s[], int len) { + if (len > 5 && s[len - 1] == 'x') { + if (s[len - 3] == 'a' && s[len - 2] == 'u' && s[len - 4] != 'e') + s[len - 2] = 'l'; + len--; + } + + if (len > 3 && s[len - 1] == 'x') + len--; + + if (len > 3 && s[len - 1] == 's') + len--; + + if (len > 9 && endsWith(s, len, "issement")) { + len -= 6; + s[len - 1] = 'r'; + return norm(s, len); + } + + if (len > 8 && endsWith(s, len, "issant")) { + len -= 4; + s[len - 1] = 'r'; + return norm(s, len); + } + + if (len > 6 && endsWith(s, len, "ement")) { + len -= 4; + if (len > 3 && endsWith(s, len, "ive")) { + len--; + s[len - 1] = 'f'; + } + return norm(s, len); + } + + if (len > 11 && endsWith(s, len, "ficatrice")) { + len -= 5; + s[len - 2] = 'e'; + s[len - 1] = 'r'; + return norm(s, len); + } + + if (len > 10 && endsWith(s, len, "ficateur")) { + len -= 4; + s[len - 2] = 'e'; + s[len - 1] = 'r'; + return norm(s, len); + } + + if (len > 9 && endsWith(s, len, "catrice")) { + len -= 3; + s[len - 4] = 'q'; + s[len - 3] = 'u'; + s[len - 2] = 'e'; + //s[len-1] = 'r' <-- unnecessary, already 'r'. + return norm(s, len); + } + + if (len > 8 && endsWith(s, len, "cateur")) { + len -= 2; + s[len - 4] = 'q'; + s[len - 3] = 'u'; + s[len - 2] = 'e'; + s[len - 1] = 'r'; + return norm(s, len); + } + + if (len > 8 && endsWith(s, len, "atrice")) { + len -= 4; + s[len - 2] = 'e'; + s[len - 1] = 'r'; + return norm(s, len); + } + + if (len > 7 && endsWith(s, len, "ateur")) { + len -= 3; + s[len - 2] = 'e'; + s[len - 1] = 'r'; + return norm(s, len); + } + + if (len > 6 && endsWith(s, len, "trice")) { + len--; + s[len - 3] = 'e'; + s[len - 2] = 'u'; + s[len - 1] = 'r'; + } + + if (len > 5 && endsWith(s, len, "ième")) + return norm(s, len - 4); + + if (len > 7 && endsWith(s, len, "teuse")) { + len -= 2; + s[len - 1] = 'r'; + return norm(s, len); + } + + if (len > 6 && endsWith(s, len, "teur")) { + len--; + s[len - 1] = 'r'; + return norm(s, len); + } + + if (len > 5 && endsWith(s, len, "euse")) + return norm(s, len - 2); + + if (len > 8 && endsWith(s, len, "ère")) { + len--; + s[len - 2] = 'e'; + return norm(s, len); + } + + if (len > 7 && endsWith(s, len, "ive")) { + len--; + s[len - 1] = 'f'; + return norm(s, len); + } + + if (len > 4 && (endsWith(s, len, "folle") || endsWith(s, len, "molle"))) { + len -= 2; + s[len - 1] = 'u'; + return norm(s, len); + } + + if (len > 9 && endsWith(s, len, "nnelle")) + return norm(s, len - 5); + + if (len > 9 && endsWith(s, len, "nnel")) + return norm(s, len - 3); + + if (len > 4 && endsWith(s, len, "ète")) { + len--; + s[len - 2] = 'e'; + } + + if (len > 8 && endsWith(s, len, "ique")) + len -= 4; + + if (len > 8 && endsWith(s, len, "esse")) + return norm(s, len - 3); + + if (len > 7 && endsWith(s, len, "inage")) + return norm(s, len - 3); + + if (len > 9 && endsWith(s, len, "isation")) { + len -= 7; + if (len > 5 && endsWith(s, len, "ual")) + s[len - 2] = 'e'; + return norm(s, len); + } + + if (len > 9 && endsWith(s, len, "isateur")) + return norm(s, len - 7); + + if (len > 8 && endsWith(s, len, "ation")) + return norm(s, len - 5); + + if (len > 8 && endsWith(s, len, "ition")) + return norm(s, len - 5); + + return norm(s, len); + } + + private int norm(char s[], int len) { + if (len > 4) { + for (int i = 0; i < len; i++) + switch (s[i]) { + case 'à': + case 'á': + case 'â': + s[i] = 'a'; + break; + case 'ô': + s[i] = 'o'; + break; + case 'è': + case 'é': + case 'ê': + s[i] = 'e'; + break; + case 'ù': + case 'û': + s[i] = 'u'; + break; + case 'î': + s[i] = 'i'; + break; + case 'ç': + s[i] = 'c'; + break; + } + + /* XXX chatellier 20130516 disabled for cantharella because + duplicated characters are usefull in some refs identifiers + char ch = s[0]; + for (int i = 1; i < len; i++) { + if (s[i] == ch) + len = delete(s, i--, len); + else + ch = s[i]; + }*/ + } + + if (len > 4 && endsWith(s, len, "ie")) + len -= 2; + + if (len > 4) { + if (s[len - 1] == 'r') + len--; + if (s[len - 1] == 'e') + len--; + if (s[len - 1] == 'e') + len--; + if (s[len - 1] == s[len - 2]) + len--; + } + return len; + } +} Property changes on: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/CantharellaStemmer.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Deleted: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/IndexEventListener.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/IndexEventListener.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/IndexEventListener.java 2013-05-21 12:36:43 UTC (rev 224) @@ -1,112 +0,0 @@ -/* - * #%L - * Cantharella :: Data - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2012 - 2013 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see <http://www.gnu.org/licenses/>. - * #L% - */ -package nc.ird.cantharella.data.model.search; - -import java.io.Serializable; - -import nc.ird.cantharella.data.model.Campagne; -import nc.ird.cantharella.data.model.CampagnePersonneDroits; -import nc.ird.cantharella.data.model.Lot; -import nc.ird.cantharella.data.model.LotPersonneDroits; -import nc.ird.cantharella.data.model.Personne; -import nc.ird.cantharella.data.model.utils.CompositeId; - -import org.hibernate.Session; -import org.hibernate.event.spi.AbstractEvent; -import org.hibernate.event.spi.PostDeleteEvent; -import org.hibernate.event.spi.PostInsertEvent; -import org.hibernate.event.spi.PostUpdateEvent; -import org.hibernate.search.backend.spi.WorkType; -import org.hibernate.search.event.impl.FullTextIndexEventListener; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Hibernate event listener to force reindexation on custom indexed entity: - * {@link LotPersonneDroits} and {@link CampagnePersonneDroits}. - * - * @author Eric Chatellier - */ -public class IndexEventListener extends FullTextIndexEventListener { - - /** Logger */ - private static final Logger LOG = LoggerFactory.getLogger(IndexEventListener.class); - - /** - * Constructor. - * @param installation installation strategy - */ - public IndexEventListener(Installation installation) { - super(installation); - } - - /** {@inheritDoc}. */ - @Override - public void onPostDelete(PostDeleteEvent event) { - Object entity = event.getEntity(); - LOG.debug("[Event] onPostDelete on : " + entity); - reIndexEntity(event, event.getEntity(), event.getId()); - } - - /** {@inheritDoc}. */ - @Override - public void onPostInsert(PostInsertEvent event) { - Object entity = event.getEntity(); - LOG.debug("[Event] onPostInsert on : " + entity); - reIndexEntity(event, event.getEntity(), event.getId()); - } - - /** {@inheritDoc}. */ - @Override - public void onPostUpdate(PostUpdateEvent event) { - Object entity = event.getEntity(); - LOG.debug("[Event] onPostUpdate on : " + entity); - reIndexEntity(event, event.getEntity(), event.getId()); - } - - /** - * Reindex entity associated with event entity depending on - * entity type. - * - * @param event event - * @param entity current entity - * @param id entity id - */ - @SuppressWarnings("unchecked") - protected void reIndexEntity(AbstractEvent event, Object entity, Serializable id) { - Session session = event.getSession(); - if (entity instanceof LotPersonneDroits) { - Lot lot = ((CompositeId<Lot, Personne>) id).getPk1(); - // must do refresh to avoid lazy or no entity with given identifier - // exception - session.refresh(lot); - super.processWork(lot, lot.getIdLot(), WorkType.INDEX, event, false); - } else if (entity instanceof CampagnePersonneDroits) { - Campagne campagne = ((CompositeId<Campagne, Personne>) id).getPk1(); - // must do refresh to avoid lazy or no entity with given identifier - // exception - session.refresh(campagne); - super.processWork(campagne, campagne.getIdCampagne(), WorkType.INDEX, event, false); - } - } -} Deleted: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/LotPersonneBridge.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/LotPersonneBridge.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/LotPersonneBridge.java 2013-05-21 12:36:43 UTC (rev 224) @@ -1,67 +0,0 @@ -package nc.ird.cantharella.data.model.search; - -/* - * #%L - * Cantharella :: Data - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2010 - 2013 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see <http://www.gnu.org/licenses/>. - * #L% - */ - -import nc.ird.cantharella.data.model.Lot; -import nc.ird.cantharella.data.model.LotPersonneDroits; -import nc.ird.cantharella.data.model.Personne; -import nc.ird.cantharella.data.model.utils.CompositeId; - -import org.apache.lucene.document.Document; -import org.apache.lucene.document.Field; -import org.hibernate.search.bridge.FieldBridge; -import org.hibernate.search.bridge.LuceneOptions; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Hibernate search can't index CompositeId by himself. - * - * To index right on entities, we add a field "droit.pk2" containing user - * id, meaning "this user can see this indexed document". - * - * @author Eric Chatellier - */ -public class LotPersonneBridge implements FieldBridge { - - /** Logger */ - private static final Logger LOG = LoggerFactory.getLogger(LotPersonneBridge.class); - - /** {@inheritDoc} */ - @Override - public void set(String name, Object value, Document document, LuceneOptions luceneOptions) { - - LotPersonneDroits lotPersonneDroits = (LotPersonneDroits) value; - if (LOG.isTraceEnabled()) { - LOG.trace("Custom indexing of LotPersonneDroits : " + lotPersonneDroits.getId().getPk1().getIdLot() + "," - + lotPersonneDroits.getId().getPk2().getIdPersonne()); - } - - CompositeId<Lot, Personne> compositeId = lotPersonneDroits.getId(); - - // commons information for all produit - document.add(new Field("droit.pk2", String.valueOf(compositeId.getPk2().getIdPersonne()), luceneOptions - .getStore(), luceneOptions.getIndex(), luceneOptions.getTermVector())); - } -} Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/ProduitBridge.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/ProduitBridge.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/ProduitBridge.java 2013-05-21 12:36:43 UTC (rev 224) @@ -23,13 +23,9 @@ * #L% */ -import java.util.List; - -import nc.ird.cantharella.data.model.CampagnePersonneDroits; import nc.ird.cantharella.data.model.Extrait; import nc.ird.cantharella.data.model.Fraction; import nc.ird.cantharella.data.model.Lot; -import nc.ird.cantharella.data.model.LotPersonneDroits; import nc.ird.cantharella.data.model.Produit; import nc.ird.cantharella.data.model.ResultatTestBio; @@ -62,8 +58,6 @@ } // commons information for all produit - //document.add(new Field("produit.ref", produit.getRef(), luceneOptions.getStore(), luceneOptions.getIndex(), - // luceneOptions.getTermVector())); Lot lot = null; if (produit instanceof Extrait) { if (LOG.isTraceEnabled()) { @@ -79,28 +73,33 @@ lot = fraction.getPurification().getLotSource(); } - document.add(new Field("produit.lot.ref", lot.getRef(), luceneOptions.getStore(), luceneOptions.getIndex(), + // ref field tokenized with a non fr analyzer + // to avoid duplicated letter removal (00) + document.add(new Field(name + ".lot.ref", lot.getRef(), luceneOptions.getStore(), luceneOptions.getIndex(), luceneOptions.getTermVector())); - document.add(new Field("produit.lot.speciment.embranchement", lot.getSpecimenRef().getEmbranchement(), - luceneOptions.getStore(), luceneOptions.getIndex(), luceneOptions.getTermVector())); + + if (StringUtils.isNotBlank(lot.getSpecimenRef().getEmbranchement())) { + document.add(new Field(name + ".lot.specimen.embranchement", lot.getSpecimenRef().getEmbranchement(), + luceneOptions.getStore(), luceneOptions.getIndex(), luceneOptions.getTermVector())); + } if (StringUtils.isNotBlank(lot.getSpecimenRef().getFamille())) { - document.add(new Field("produit.lot.speciment.famille", lot.getSpecimenRef().getFamille(), luceneOptions + document.add(new Field(name + ".lot.specimen.famille", lot.getSpecimenRef().getFamille(), luceneOptions .getStore(), luceneOptions.getIndex(), luceneOptions.getTermVector())); } if (StringUtils.isNotBlank(lot.getSpecimenRef().getGenre())) { - document.add(new Field("produit.lot.speciment.genre", lot.getSpecimenRef().getGenre(), luceneOptions + document.add(new Field(name + ".lot.specimen.genre", lot.getSpecimenRef().getGenre(), luceneOptions .getStore(), luceneOptions.getIndex(), luceneOptions.getTermVector())); } if (StringUtils.isNotBlank(lot.getSpecimenRef().getEspece())) { - document.add(new Field("produit.lot.speciment.espece", lot.getSpecimenRef().getEspece(), luceneOptions + document.add(new Field(name + ".lot.specimen.espece", lot.getSpecimenRef().getEspece(), luceneOptions .getStore(), luceneOptions.getIndex(), luceneOptions.getTermVector())); } - document.add(new Field("produit.lot.campagne.nom", lot.getCampagne().getNom(), luceneOptions.getStore(), + document.add(new Field(name + ".lot.campagne.nom", lot.getCampagne().getNom(), luceneOptions.getStore(), luceneOptions.getIndex(), luceneOptions.getTermVector())); - document.add(new Field("produit.lot.campagne.codePays", lot.getCampagne().getCodePays(), luceneOptions + document.add(new Field(name + ".lot.campagne.codePays", lot.getCampagne().getCodePays(), luceneOptions .getStore(), luceneOptions.getIndex(), luceneOptions.getTermVector())); - // commons information for all produit + /* commons information for all produit List<LotPersonneDroits> personnesDroits = lot.getPersonnesDroits(); for (LotPersonneDroits lotPersonneDroit : personnesDroits) { document.add(new Field("droit.pk2", String.valueOf(lotPersonneDroit.getId().getPk2().getIdPersonne()), @@ -110,6 +109,6 @@ for (CampagnePersonneDroits campagnesDroit : campagnesDroits) { document.add(new Field("droit.pk2", String.valueOf(campagnesDroit.getId().getPk2().getIdPersonne()), luceneOptions.getStore(), luceneOptions.getIndex(), luceneOptions.getTermVector())); - } + }*/ } } Deleted: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/UtilisateurSearchFilter.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/UtilisateurSearchFilter.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/search/UtilisateurSearchFilter.java 2013-05-21 12:36:43 UTC (rev 224) @@ -1,129 +0,0 @@ -/* - * #%L - * Cantharella :: Data - * $Id$ - * $HeadURL$ - * %% - * Copyright (C) 2009 - 2013 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) - * %% - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see <http://www.gnu.org/licenses/>. - * #L% - */ -package nc.ird.cantharella.data.model.search; - -import java.io.IOException; - -import nc.ird.cantharella.data.model.Utilisateur; -import nc.ird.cantharella.data.model.Utilisateur.TypeDroit; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.apache.lucene.index.IndexReader; -import org.apache.lucene.index.Term; -import org.apache.lucene.index.TermDocs; -import org.apache.lucene.search.DocIdSet; -import org.apache.lucene.search.Filter; -import org.apache.lucene.util.OpenBitSet; -import org.hibernate.search.annotations.Key; -import org.hibernate.search.filter.FilterKey; -import org.hibernate.search.filter.StandardFilterKey; - -/** - * Filtre lucene utilisé par hibernate search pour filtrer les resultats - * suivant l'utilisateur connecté. - * - * @author Eric Chatellier - */ -public class UtilisateurSearchFilter extends Filter { - - /** serialVersionUID.*/ - private static final long serialVersionUID = 5599764509232575010L; - - /** Logger */ - private static final Logger LOG = LoggerFactory.getLogger(UtilisateurSearchFilter.class); - - /** Utilisateur performing the query. */ - protected Utilisateur utilisateur; - - /** - * Utilisateur getter. - * - * @return utilisateur - */ - public Utilisateur getUtilisateur() { - return utilisateur; - } - - /** - * Utilisateur setter. - * - * @param utilisateur utilisateur - */ - public void setUtilisateur(Utilisateur utilisateur) { - this.utilisateur = utilisateur; - } - - /** - * Return filter parameters key. - * - * @return filter parameters - */ - @Key - public FilterKey getKey() { - StandardFilterKey key = new StandardFilterKey(); - key.addParameter(utilisateur); - return key; - } - - /** {@inheritDoc} */ - @Override - public DocIdSet getDocIdSet(IndexReader reader) throws IOException { - OpenBitSet bitSet = new OpenBitSet(reader.maxDoc()); - - if (utilisateur.getTypeDroit() == TypeDroit.ADMINISTRATEUR) { - if (LOG.isDebugEnabled()) { - LOG.debug("Filtering term docs for administrator"); - } - // all docs - for (int idx = 0; idx < reader.maxDoc(); idx++) { - if (!reader.isDeleted(idx)) { - bitSet.set(idx); - } - } - } else { - if (LOG.isDebugEnabled()) { - LOG.debug("Filtering term docs for utilisateur"); - } - // only docs where user is creator - TermDocs termDocsCreateur = reader.termDocs(new Term("createur.idPersonne", String.valueOf(utilisateur - .getIdPersonne()))); - while (termDocsCreateur.next()) { - if (!reader.isDeleted(termDocsCreateur.doc())) { - bitSet.set(termDocsCreateur.doc()); - } - } - - // and docs where user has rights on - TermDocs termDocsDroits = reader - .termDocs(new Term("droit.pk2", String.valueOf(utilisateur.getIdPersonne()))); - while (termDocsDroits.next()) { - if (!reader.isDeleted(termDocsCreateur.doc())) { - bitSet.set(termDocsDroits.doc()); - } - } - } - - return bitSet; - } -} Modified: trunk/cantharella.data/src/main/resources/META-INF/services/org.hibernate.integrator.spi.Integrator =================================================================== --- trunk/cantharella.data/src/main/resources/META-INF/services/org.hibernate.integrator.spi.Integrator 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/resources/META-INF/services/org.hibernate.integrator.spi.Integrator 2013-05-21 12:36:43 UTC (rev 224) @@ -1,2 +1 @@ -nc.ird.cantharella.data.config.ValidationIntegrator -nc.ird.cantharella.data.config.HibernateSearchIntegrator \ No newline at end of file +nc.ird.cantharella.data.config.ValidationIntegrator \ No newline at end of file Modified: trunk/cantharella.data/src/main/resources/cantharella.conf =================================================================== --- trunk/cantharella.data/src/main/resources/cantharella.conf 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.data/src/main/resources/cantharella.conf 2013-05-21 12:36:43 UTC (rev 224) @@ -35,4 +35,4 @@ # Hibernate search lucene index location on filesystem. hibernate.search.indexBase=/tmp/cantharella # Hibernate search analyzer -hibernate.search.analyzer=org.apache.lucene.analysis.fr.FrenchAnalyzer \ No newline at end of file +hibernate.search.analyzer=org.apache.lucene.analysis.fr.FrenchAnalyzer Modified: trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/DocumentService.java =================================================================== --- trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/DocumentService.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/DocumentService.java 2013-05-21 12:36:43 UTC (rev 224) @@ -27,10 +27,8 @@ import nc.ird.cantharella.data.exceptions.DataConstraintException; import nc.ird.cantharella.data.exceptions.DataNotFoundException; import nc.ird.cantharella.data.model.Document; -import nc.ird.cantharella.data.model.Lot; import nc.ird.cantharella.data.model.TypeDocument; import nc.ird.cantharella.data.model.Utilisateur; -import nc.ird.cantharella.data.model.Utilisateur.TypeDroit; import nc.ird.cantharella.data.model.utils.DocumentAttachable; import nc.ird.cantharella.service.exceptions.InvalidFileExtensionException; import nc.ird.cantharella.service.utils.normalizers.TypeDocumentNormalizer; Modified: trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java =================================================================== --- trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java 2013-05-21 12:36:43 UTC (rev 224) @@ -24,11 +24,14 @@ import java.util.ArrayList; import java.util.Collections; +import java.util.Iterator; import java.util.List; +import java.util.Set; import javax.annotation.Resource; import nc.ird.cantharella.data.exceptions.UnexpectedException; +import nc.ird.cantharella.data.model.Campagne; import nc.ird.cantharella.data.model.Extraction; import nc.ird.cantharella.data.model.Lot; import nc.ird.cantharella.data.model.Molecule; @@ -37,10 +40,15 @@ import nc.ird.cantharella.data.model.Specimen; import nc.ird.cantharella.data.model.Station; import nc.ird.cantharella.data.model.Utilisateur; +import nc.ird.cantharella.data.model.Utilisateur.TypeDroit; import nc.ird.cantharella.service.model.SearchBean; import nc.ird.cantharella.service.model.SearchResult; +import nc.ird.cantharella.service.services.LotService; import nc.ird.cantharella.service.services.SearchService; +import nc.ird.cantharella.service.services.SpecimenService; +import nc.ird.cantharella.service.services.StationService; +import org.apache.lucene.analysis.Analyzer; import org.apache.lucene.index.FieldInfos; import org.apache.lucene.index.IndexReader; import org.apache.lucene.queryParser.MultiFieldQueryParser; @@ -52,15 +60,14 @@ import org.apache.lucene.util.Version; import org.hibernate.Session; import org.hibernate.SessionFactory; -import org.hibernate.search.FullTextFilter; import org.hibernate.search.FullTextQuery; import org.hibernate.search.FullTextSession; import org.hibernate.search.MassIndexer; import org.hibernate.search.Search; import org.hibernate.search.SearchFactory; -import org.hibernate.search.annotations.FullTextFilterDefs; import org.slf4j.Logger; import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Service; /** @@ -78,6 +85,18 @@ @Resource private SessionFactory sessionFactory; + /** Lot service for permissions **/ + @Autowired + private LotService lotService; + + /** Station service for permissions **/ + @Autowired + private StationService stationService; + + /** Specimen service for permission **/ + @Autowired + private SpecimenService specimenService; + /** {@inheritDoc} */ @Override public void reIndex() { @@ -90,6 +109,8 @@ FullTextSession fullTextSession = Search.getFullTextSession(session); try { MassIndexer indexer = fullTextSession.createIndexer(); + indexer.batchSizeToLoadObjects(1); + indexer.threadsToLoadObjects(1); indexer.threadsForSubsequentFetching(1); indexer.startAndWait(); @@ -172,6 +193,9 @@ result.setStations(resultatStations); result.setMolecules(resultatMolecules); + // security manually managed + result = filterResults(result, utilisateur); + } catch (ParseException ex) { throw new UnexpectedException("Can't parse query", ex); } @@ -206,12 +230,13 @@ String fieldName = fieldInfos.fieldName(i); // il semble impossible de ne pas recuperer l'id du document // on l'exclut donc manuellement - if (!fieldName.startsWith("id") && !fieldName.contains(".id") && !fieldName.endsWith(".pk2")) { - fieldList.add(fieldInfos.fieldName(i)); + if (!fieldName.startsWith("id") && !fieldName.contains(".id") /*&& !fieldName.endsWith(".pk2")*/) { + fieldList.add(fieldName); } } + Analyzer analyzer = searchFactory.getAnalyzer(clazz); QueryParser parser = new MultiFieldQueryParser(Version.LUCENE_36, fieldList.toArray(new String[fieldList.size()]), - searchFactory.getAnalyzer(clazz)); + analyzer); searchFactory.getIndexReaderAccessor().close(reader); // autorisation de "*" en premier caractere @@ -224,12 +249,79 @@ // convert lucene query to hibernate query FullTextQuery hibQuery = fullTextSession.createFullTextQuery(query, clazz); - // add security filter (if class has filter defined) - if (clazz.getAnnotation(FullTextFilterDefs.class) != null) { - FullTextFilter filter = hibQuery.enableFullTextFilter("utilisateur-" + clazz.getSimpleName()); - filter.setParameter("utilisateur", utilisateur); + return hibQuery; + } + + /** + * Iterate over all results and remove those that user is not allowed to see. + * + * @see Utilisateur#getLotsDroits() + * @see Utilisateur#getCampagnesDroits() + */ + private SearchResult filterResults(SearchResult result, Utilisateur utilisateur) { + + // no filtering + if (utilisateur.getTypeDroit() == TypeDroit.ADMINISTRATEUR) { + return result; } - return hibQuery; + // get campagnes and lots data to manage rigths + List<Campagne> campagnes = new ArrayList<Campagne>(); + campagnes.addAll(utilisateur.getCampagnesCreees()); + campagnes.addAll(utilisateur.getCampagnesDroits().keySet()); + List<Lot> lots = new ArrayList<Lot>(); + lots.addAll(utilisateur.getLotsCrees()); + lots.addAll(utilisateur.getLotsDroits().keySet()); + + // SearchResult#lots + Iterator<Lot> itLots = result.getLots().iterator(); + while (itLots.hasNext()) { + Lot lot = itLots.next(); + if (!lotService.isLotAccessibleByUser(lot, utilisateur)) { + itLots.remove(); + } + } + + // SearchResult#extractions + Iterator<Extraction> itExtractions = result.getExtractions().iterator(); + while (itExtractions.hasNext()) { + Extraction extraction = itExtractions.next(); + Lot lot = extraction.getLot(); + if (!lotService.isLotAccessibleByUser(lot, utilisateur)) { + itExtractions.remove(); + } + } + + // SearchResult#purifications + Iterator<Purification> itPurifications = result.getPurifications().iterator(); + while (itPurifications.hasNext()) { + Purification purification = itPurifications.next(); + Lot lot = purification.getLotSource(); + if (!lotService.isLotAccessibleByUser(lot, utilisateur)) { + itPurifications.remove(); + } + } + + // SearchResult#resultatTestBios + Iterator<ResultatTestBio> itResultatTestBios = result.getResultatTestBios().iterator(); + while (itResultatTestBios.hasNext()) { + ResultatTestBio resultatTestBio = itResultatTestBios.next(); + Lot lot = resultatTestBio.getLotSource(); + if (!lotService.isLotAccessibleByUser(lot, utilisateur)) { + itResultatTestBios.remove(); + } + } + + // SearchResult#stations + Set<Station> userStations = stationService.listStationsForUser(utilisateur); + result.getStations().retainAll(userStations); + + // SearchResult#specimens + Set<Specimen> userSpecimens = specimenService.listSpecimensForUser(utilisateur); + result.getSpecimens().retainAll(userSpecimens); + + // SearchResult#molecules : all visible, no filtering + + return result; } } Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/extraction/ListExtractionsPage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/extraction/ListExtractionsPage.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/extraction/ListExtractionsPage.java 2013-05-21 12:36:43 UTC (rev 224) @@ -54,7 +54,6 @@ import org.apache.wicket.markup.html.link.Link; import org.apache.wicket.markup.repeater.Item; import org.apache.wicket.model.IModel; -import org.apache.wicket.model.Model; import org.apache.wicket.spring.injection.annot.SpringBean; /** Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/station/ListStationsPage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/station/ListStationsPage.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/station/ListStationsPage.java 2013-05-21 12:36:43 UTC (rev 224) @@ -51,7 +51,6 @@ import org.apache.wicket.markup.html.link.Link; import org.apache.wicket.markup.repeater.Item; import org.apache.wicket.model.IModel; -import org.apache.wicket.model.Model; import org.apache.wicket.spring.injection.annot.SpringBean; /** Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/testBio/ListTestsBioPage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/testBio/ListTestsBioPage.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/testBio/ListTestsBioPage.java 2013-05-21 12:36:43 UTC (rev 224) @@ -61,7 +61,6 @@ import org.apache.wicket.markup.html.link.Link; import org.apache.wicket.markup.repeater.Item; import org.apache.wicket.model.IModel; -import org.apache.wicket.model.Model; import org.apache.wicket.spring.injection.annot.SpringBean; /** Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/utils/panels/PropertyLabelLinkProduitPanel.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/utils/panels/PropertyLabelLinkProduitPanel.java 2013-05-21 09:32:37 UTC (rev 223) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/utils/panels/PropertyLabelLinkProduitPanel.java 2013-05-21 12:36:43 UTC (rev 224) @@ -32,7 +32,6 @@ import org.apache.wicket.markup.html.link.Link; import org.apache.wicket.markup.html.panel.Panel; import org.apache.wicket.model.IModel; -import org.apache.wicket.model.Model; /** * Panel which display a "produit" link with inside the correspondig value of the model. If the produit is an Extrait,

1 0