February 2013 - Cantharella-commits - mailman.cloud.codelutin.com

r146 - in trunk/cantharella.web/src/main: java/nc/ird/cantharella/web/config java/nc/ird/cantharella/web/pages java/nc/ird/cantharella/web/pages/domain/document java/nc/ird/cantharella/web/pages/domain/molecule resources
by echatellier＠users.forge.codelutin.com Feb. 21, 2013

Feb. 21, 2013

Author: echatellier Date: 2013-02-21 13:33:49 +0100 (Thu, 21 Feb 2013) New Revision: 146 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/146 Log: Move document table init in helper class to be used in multiple class. Fix configuration (in wicket application class) Fix display messages. Added: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/DocumentPageHelper.java Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/config/WebApplicationImpl.java trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/TemplatePage.java trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/ManageDocumentPage.java trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.html trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java trunk/cantharella.web/src/main/resources/cantharella.conf trunk/cantharella.web/src/main/resources/web_en.properties trunk/cantharella.web/src/main/resources/web_fr.properties Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/config/WebApplicationImpl.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/config/WebApplicationImpl.java 2013-02-21 12:30:01 UTC (rev 145) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/config/WebApplicationImpl.java 2013-02-21 12:33:49 UTC (rev 146) @@ -28,6 +28,7 @@ import nc.ird.cantharella.data.exceptions.DataConstraintException; import nc.ird.cantharella.data.exceptions.UnexpectedException; import nc.ird.cantharella.service.services.PersonneService; +import nc.ird.cantharella.utils.AssertTools; import nc.ird.cantharella.web.pages.ContactPage; import nc.ird.cantharella.web.pages.HomePage; import nc.ird.cantharella.web.pages.domain.campagne.ListCampagnesPage; @@ -72,7 +73,6 @@ import nc.ird.cantharella.web.utils.converters.DoubleConverterImpl; import nc.ird.cantharella.web.utils.security.AuthSession; import nc.ird.cantharella.web.utils.security.AuthStrategy; -import nc.ird.cantharella.utils.AssertTools; import org.apache.wicket.ConverterLocator; import org.apache.wicket.IConverterLocator; @@ -99,6 +99,7 @@ import org.apache.wicket.util.time.Duration; import org.slf4j.Logger; import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Value; /** * Web application @@ -134,6 +135,10 @@ /** Wicket configuration (Application.DEVELOPMENT or Application.DEPLOYMENT) */ private final RuntimeConfigurationType wicketConfiguration; + /** Configuration document max upload size. */ + @Value("${document.maxUploadSize}") + protected long documentMaxUploadSize; + /** * Constructor * @param debug Debug mode @@ -423,4 +428,12 @@ mountPage("/search", SearchPage.class); } + /** + * Get document max upload size. + * + * @return document max upload size + */ + public long getDocumentMaxUploadSize() { + return documentMaxUploadSize; + } } \ No newline at end of file Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/TemplatePage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/TemplatePage.java 2013-02-21 12:30:01 UTC (rev 145) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/TemplatePage.java 2013-02-21 12:33:49 UTC (rev 146) @@ -378,7 +378,7 @@ * Refresh feedback page and scroll up to the anchor if any feedback message * @param target Ajax target */ - protected final void refreshFeedbackPage(AjaxRequestTarget target) { + public final void refreshFeedbackPage(AjaxRequestTarget target) { if (target != null) { target.add(feedbackPanelContainer); // scroll up to the anchor if any feedback message Added: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/DocumentPageHelper.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/DocumentPageHelper.java (rev 0) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/DocumentPageHelper.java 2013-02-21 12:33:49 UTC (rev 146) @@ -0,0 +1,208 @@ +/* + * #%L + * Cantharella :: Web + * $Id$ + * $HeadURL$ + * %% + * Copyright (C) 2009 - 2013 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as published by + * the Free Software Foundation, either version 3 of the License, or + * (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + * #L% + */ +package nc.ird.cantharella.web.pages.domain.document; + +import java.io.ByteArrayInputStream; +import java.io.IOException; +import java.io.InputStream; +import java.io.OutputStream; +import java.util.ArrayList; +import java.util.List; + +import nc.ird.cantharella.data.model.Document; +import nc.ird.cantharella.data.model.utils.DocumentAttachable; +import nc.ird.cantharella.web.config.WebContext; +import nc.ird.cantharella.web.pages.TemplatePage; +import nc.ird.cantharella.web.utils.CallerPage; +import nc.ird.cantharella.web.utils.columns.AjaxButtonPropertyColumn; +import nc.ird.cantharella.web.utils.columns.LinkPropertyColumn; +import nc.ird.cantharella.web.utils.columns.LinkableImagePropertyColumn; +import nc.ird.cantharella.web.utils.models.SimpleSortableListDataProvider; + +import org.apache.commons.io.IOUtils; +import org.apache.wicket.MarkupContainer; +import org.apache.wicket.ajax.AjaxRequestTarget; +import org.apache.wicket.ajax.markup.html.form.AjaxSubmitLink; +import org.apache.wicket.extensions.ajax.markup.html.repeater.data.table.AjaxFallbackDefaultDataTable; +import org.apache.wicket.extensions.markup.html.repeater.data.grid.ICellPopulator; +import org.apache.wicket.extensions.markup.html.repeater.data.table.DataTable; +import org.apache.wicket.extensions.markup.html.repeater.data.table.IColumn; +import org.apache.wicket.extensions.markup.html.repeater.data.table.PropertyColumn; +import org.apache.wicket.markup.html.WebMarkupContainer; +import org.apache.wicket.markup.html.form.Form; +import org.apache.wicket.markup.repeater.Item; +import org.apache.wicket.model.IModel; +import org.apache.wicket.model.Model; +import org.apache.wicket.request.http.WebResponse; + +/** + * Helper providing static method to init document list into entity Read or + * Manager page. + * + * @author Eric Chatellier + */ +public abstract class DocumentPageHelper { + + /** + * Init attached document table for current entity. + * + * @param templatePage parent page + * @param formView form to add table to + * @param documentAttachable entity to get documents + * @param currentPage current page + */ + public static void initAttachedDocumentsManageTable(final TemplatePage templatePage, + final Form<Void> formView, final DocumentAttachable documentAttachable, final CallerPage currentPage) { + + List<Document> documents = documentAttachable.getDocuments(); + + // On englobe le "DataView" dans un composant neutre que l'on pourra + // rafraichir quand la liste évoluera + final MarkupContainer attachedDocumentRefresh = new WebMarkupContainer( + "ListDocumentsPage.AttachedDocuments.Refresh"); + attachedDocumentRefresh.setOutputMarkupId(true); + formView.add(attachedDocumentRefresh); + + SimpleSortableListDataProvider<Document> attachedDocumentsDataProvider = new SimpleSortableListDataProvider<Document>( + documents, templatePage.getSession().getLocale()); + + List<IColumn<Document, String>> columns = new ArrayList<IColumn<Document, String>>(); + + columns.add(new LinkPropertyColumn<Document, String>(new Model<String>(templatePage.getString("Document.titre")), "titre", + "titre") { + @Override + public void onClick(Item<ICellPopulator<Document>> item, String componentId, IModel<Document> model) { + templatePage.setResponsePage(new ReadDocumentPage(model.getObject(), documentAttachable, currentPage)); + } + }); + + columns.add(new PropertyColumn<Document, String>(new Model<String>(templatePage.getString("Document.typeDocument")), + "typeDocument.nom", "typeDocument.nom")); + + columns.add(new PropertyColumn<Document, String>(new Model<String>(templatePage.getString("Document.createur")), "createur", + "createur")); + + columns.add(new LinkableImagePropertyColumn<Document, String>(new Model<String>(templatePage.getString("Document.link")), + "images/download.png", templatePage.getString("Document.link"), templatePage.getString("Document.link")) { + @Override + public void onClick(Item<ICellPopulator<Document>> item, String componentId, IModel<Document> model) { + Document document = model.getObject(); + WebResponse response = (WebResponse) templatePage.getResponse(); + response.setContentType(document.getFileMimetype()); + response.setAttachmentHeader(document.getFileName()); + response.write(document.getFileContent()); + } + }); + + final DataTable<Document, String> attachedDocumentTable = new AjaxFallbackDefaultDataTable<Document, String>( + "ListDocumentsPage.AttachedDocuments", columns, attachedDocumentsDataProvider, WebContext.ROWS_PER_PAGE); + + columns.add(new AjaxButtonPropertyColumn<Document, String>(new Model<String>(templatePage.getString("Actions")), + new Model<String>(templatePage.getString("Delete")), formView) { + @Override + public void onSubmit(AjaxRequestTarget target, Form<?> form, IModel<Document> model) { + Document document = model.getObject(); + documentAttachable.removeDocument(document); + + if (target != null) { + target.add(attachedDocumentTable); + templatePage.refreshFeedbackPage(target); + } + } + }); + + attachedDocumentRefresh.add(attachedDocumentTable); + + // Action : création d'un nouveau document + // ajaxSubmitLink permet de sauvegarder l'état du formulaire + formView.add(new AjaxSubmitLink("NewDocument") { + @Override + protected void onSubmit(AjaxRequestTarget request, Form<?> form) { + setResponsePage(new ManageDocumentPage(currentPage, documentAttachable, false)); + } + + // si erreur, le formulaire est également enregistré puis la redirection effectuée + @Override + protected void onError(AjaxRequestTarget target, Form<?> form) { + setResponsePage(new ManageDocumentPage(currentPage, documentAttachable, false)); + } + }.setVisibilityAllowed(true)); + } + + /** + * Init attached document table for current entity. + * + * @param templatePage parent page + * @param formView form to add table to + * @param documentAttachable entity to get documents + * @param currentPage current page + */ + public static void initAttachedDocumentsReadTable(final TemplatePage templatePage, final DocumentAttachable documentAttachable, + final CallerPage currentPage) { + + List<Document> documents = documentAttachable.getDocuments(); + + SimpleSortableListDataProvider<Document> attachedDocumentsDataProvider = new SimpleSortableListDataProvider<Document>( + documents, templatePage.getSession().getLocale()); + + List<IColumn<Document, String>> columns = new ArrayList<IColumn<Document, String>>(); + + columns.add(new LinkPropertyColumn<Document, String>(new Model<String>(templatePage.getString("Document.titre")), "titre", + "titre") { + @Override + public void onClick(Item<ICellPopulator<Document>> item, String componentId, IModel<Document> model) { + templatePage.setResponsePage(new ReadDocumentPage(model.getObject(), documentAttachable, currentPage)); + } + }); + + columns.add(new PropertyColumn<Document, String>(new Model<String>(templatePage.getString("Document.typeDocument")), + "typeDocument.nom", "typeDocument.nom")); + + columns.add(new PropertyColumn<Document, String>(new Model<String>(templatePage.getString("Document.createur")), "createur", + "createur")); + + columns.add(new LinkableImagePropertyColumn<Document, String>(new Model<String>(templatePage.getString("Document.link")), + "images/download.png", templatePage.getString("Document.link"), templatePage.getString("Document.link")) { + @Override + public void onClick(Item<ICellPopulator<Document>> item, String componentId, IModel<Document> model) { + + Document document = model.getObject(); + WebResponse response = (WebResponse) templatePage.getResponse(); + response.setContentType(document.getFileMimetype()); + response.setAttachmentHeader(document.getFileName()); + + OutputStream out = templatePage.getResponse().getOutputStream(); + InputStream in = new ByteArrayInputStream(document.getFileContent()); + try { + IOUtils.copy(in, out); + } catch (IOException e) { + e.printStackTrace(); + } + } + }); + + final DataTable<Document, String> attachedDocumentTable = new AjaxFallbackDefaultDataTable<Document, String>( + "ListDocumentsPage.AttachedDocuments", columns, attachedDocumentsDataProvider, WebContext.ROWS_PER_PAGE); + templatePage.add(attachedDocumentTable); + } +} Property changes on: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/DocumentPageHelper.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/ManageDocumentPage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/ManageDocumentPage.java 2013-02-21 12:30:01 UTC (rev 145) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/ManageDocumentPage.java 2013-02-21 12:33:49 UTC (rev 146) @@ -35,6 +35,7 @@ import nc.ird.cantharella.data.validation.utils.ModelValidator; import nc.ird.cantharella.service.services.DocumentService; import nc.ird.cantharella.service.services.PersonneService; +import nc.ird.cantharella.web.config.WebApplicationImpl; import nc.ird.cantharella.web.config.WebContext; import nc.ird.cantharella.web.pages.TemplatePage; import nc.ird.cantharella.web.pages.domain.personne.ManagePersonnePage; @@ -68,7 +69,6 @@ import org.apache.wicket.util.lang.Bytes; import org.slf4j.Logger; import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Value; /** * Document management page (creation/edition). @@ -110,10 +110,6 @@ /** Multiple entry. */ private boolean multipleEntry; - /** Configuration document max upload size. */ - @Value("${document.maxUploadSize}") - protected long documentMaxUploadSize; - /** * Constructeur (mode création) * @param callerPage Page appelante @@ -162,6 +158,9 @@ final CallerPage currentPage = new CallerPage(this); + // get configuration + long documentMaxUploadSize = ((WebApplicationImpl)getApplication()).getDocumentMaxUploadSize(); + // Initialisation du modèle try { documentModel = new Model<Document>(idDocument == null && document == null ? new Document() @@ -267,7 +266,8 @@ }); // Fichier - formView.add(new SimpleTooltipPanel("Document.file.info", new Model<String>(getString("Document.file.info")))); + formView.add(new SimpleTooltipPanel("Document.file.info", new Model<String>(getString("Document.file.info", + Model.of(new Object[]{documentMaxUploadSize}))))); formView.add(fileUploadField); // Action : création du document @@ -290,7 +290,6 @@ documentModel.getObject().setFileContent(uploadedFile.getBytes()); documentModel.getObject().setFileName(uploadedFile.getClientFileName()); documentModel.getObject().setFileMimetype(uploadedFile.getContentType()); - } validateModel(); } Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.html =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.html 2013-02-21 12:30:01 UTC (rev 145) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.html 2013-02-21 12:33:49 UTC (rev 146) @@ -99,7 +99,7 @@ <fieldset> <legend><wicket:message key="Molecule.provenance" /></legend> - <table class="large" cellspacing="0" wicket:id="Molecule.provenance.Table"> + <table cellspacing="0" wicket:id="Molecule.provenance.Table"> <thead> <tr> <th class="required"> @@ -182,7 +182,7 @@ <fieldset> <legend><wicket:message key="ListDocumentsPage.AttachedDocuments" /></legend> <div wicket:id="ListDocumentsPage.AttachedDocuments.Refresh"> - <table class="large" cellspacing="0" wicket:id="ListDocumentsPage.AttachedDocuments"/> + <table cellspacing="0" wicket:id="ListDocumentsPage.AttachedDocuments"/> </div> <a wicket:id="NewDocument" class="add"><wicket:message key="ListDocumentsPage.NewDocument" /></a> </fieldset> Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java 2013-02-21 12:30:01 UTC (rev 145) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java 2013-02-21 12:33:49 UTC (rev 146) @@ -22,10 +22,6 @@ */ package nc.ird.cantharella.web.pages.domain.molecule; -import java.io.ByteArrayInputStream; -import java.io.IOException; -import java.io.InputStream; -import java.io.OutputStream; import java.math.BigDecimal; import java.util.ArrayList; import java.util.List; @@ -34,23 +30,19 @@ import nc.ird.cantharella.data.exceptions.DataNotFoundException; import nc.ird.cantharella.data.exceptions.UnexpectedException; import nc.ird.cantharella.data.model.Campagne; -import nc.ird.cantharella.data.model.Document; import nc.ird.cantharella.data.model.Extrait; import nc.ird.cantharella.data.model.Fraction; import nc.ird.cantharella.data.model.Molecule; import nc.ird.cantharella.data.model.MoleculeProvenance; import nc.ird.cantharella.data.model.Produit; import nc.ird.cantharella.data.model.Utilisateur; -import nc.ird.cantharella.data.model.utils.DocumentAttachable; import nc.ird.cantharella.data.validation.utils.ModelValidator; import nc.ird.cantharella.service.services.CampagneService; import nc.ird.cantharella.service.services.MoleculeService; import nc.ird.cantharella.service.services.ProduitService; -import nc.ird.cantharella.web.config.WebContext; import nc.ird.cantharella.web.pages.TemplatePage; import nc.ird.cantharella.web.pages.domain.campagne.ManageCampagnePage; -import nc.ird.cantharella.web.pages.domain.document.ManageDocumentPage; -import nc.ird.cantharella.web.pages.domain.document.ReadDocumentPage; +import nc.ird.cantharella.web.pages.domain.document.DocumentPageHelper; import nc.ird.cantharella.web.pages.domain.extraction.ReadExtractionPage; import nc.ird.cantharella.web.pages.domain.purification.ReadPurificationPage; import nc.ird.cantharella.web.pages.renderers.ProduitRenderer; @@ -58,34 +50,24 @@ import nc.ird.cantharella.web.utils.behaviors.JSConfirmationBehavior; import nc.ird.cantharella.web.utils.behaviors.MoleculeEditorBehavior; import nc.ird.cantharella.web.utils.behaviors.MoleculeViewBehavior; -import nc.ird.cantharella.web.utils.columns.AjaxButtonPropertyColumn; -import nc.ird.cantharella.web.utils.columns.LinkPropertyColumn; -import nc.ird.cantharella.web.utils.columns.LinkableImagePropertyColumn; import nc.ird.cantharella.web.utils.forms.AutoCompleteTextFieldString; import nc.ird.cantharella.web.utils.forms.AutoCompleteTextFieldString.ComparisonMode; import nc.ird.cantharella.web.utils.forms.SubmittableButton; import nc.ird.cantharella.web.utils.forms.SubmittableButtonEvents; import nc.ird.cantharella.web.utils.models.DisplayDecimalPropertyModel; import nc.ird.cantharella.web.utils.models.DisplayDecimalPropertyModel.DecimalDisplFormat; -import nc.ird.cantharella.web.utils.models.SimpleSortableListDataProvider; import nc.ird.cantharella.web.utils.panels.PropertyLabelLinkProduitPanel; import nc.ird.cantharella.web.utils.panels.SimpleTooltipPanel; import nc.ird.cantharella.web.utils.security.AuthRole; import nc.ird.cantharella.web.utils.security.AuthRoles; import nc.ird.cantharella.web.utils.security.AuthSession; -import org.apache.commons.io.IOUtils; import org.apache.wicket.AttributeModifier; import org.apache.wicket.MarkupContainer; import org.apache.wicket.ajax.AjaxRequestTarget; import org.apache.wicket.ajax.form.AjaxFormComponentUpdatingBehavior; import org.apache.wicket.ajax.markup.html.form.AjaxFallbackButton; import org.apache.wicket.ajax.markup.html.form.AjaxSubmitLink; -import org.apache.wicket.extensions.ajax.markup.html.repeater.data.table.AjaxFallbackDefaultDataTable; -import org.apache.wicket.extensions.markup.html.repeater.data.grid.ICellPopulator; -import org.apache.wicket.extensions.markup.html.repeater.data.table.DataTable; -import org.apache.wicket.extensions.markup.html.repeater.data.table.IColumn; -import org.apache.wicket.extensions.markup.html.repeater.data.table.PropertyColumn; import org.apache.wicket.markup.html.WebMarkupContainer; import org.apache.wicket.markup.html.basic.Label; import org.apache.wicket.markup.html.form.Button; @@ -98,13 +80,11 @@ import org.apache.wicket.markup.html.link.Link; import org.apache.wicket.markup.html.list.ListItem; import org.apache.wicket.markup.html.list.ListView; -import org.apache.wicket.markup.repeater.Item; import org.apache.wicket.model.AbstractPropertyModel; import org.apache.wicket.model.IModel; import org.apache.wicket.model.LoadableDetachableModel; import org.apache.wicket.model.Model; import org.apache.wicket.model.PropertyModel; -import org.apache.wicket.request.http.WebResponse; import org.apache.wicket.spring.injection.annot.SpringBean; import org.slf4j.Logger; import org.slf4j.LoggerFactory; @@ -202,7 +182,7 @@ final Form<Void> formView = new Form<Void>("Form"); initProvenanceFields(formView, currentPage); - initAttachedDocumentsTable(formView, moleculeModel.getObject(), currentPage); + DocumentPageHelper.initAttachedDocumentsManageTable(this, formView, moleculeModel.getObject(), currentPage); // page can be accessed by anyone for editing provenance // but molecule fields can be edited only by administrators or @@ -606,99 +586,6 @@ } /** - * Init attached document table for current entity. - * - * @param formView form to add table to - * @param documentAttachable entity to get documents - * @param currentPage current page - */ - private void initAttachedDocumentsTable(final Form<Void> formView, final DocumentAttachable documentAttachable, - final CallerPage currentPage) { - - List<Document> documents = documentAttachable.getDocuments(); - - // On englobe le "DataView" dans un composant neutre que l'on pourra - // rafraichir quand la liste évoluera - final MarkupContainer attachedDocumentRefresh = new WebMarkupContainer( - "ListDocumentsPage.AttachedDocuments.Refresh"); - attachedDocumentRefresh.setOutputMarkupId(true); - formView.add(attachedDocumentRefresh); - - SimpleSortableListDataProvider<Document> attachedDocumentsDataProvider = new SimpleSortableListDataProvider<Document>( - documents, getSession().getLocale()); - - List<IColumn<Document, String>> columns = new ArrayList<IColumn<Document, String>>(); - - columns.add(new LinkPropertyColumn<Document, String>(new Model<String>(getString("Document.titre")), "titre", - "titre") { - @Override - public void onClick(Item<ICellPopulator<Document>> item, String componentId, IModel<Document> model) { - setResponsePage(new ReadDocumentPage(model.getObject(), documentAttachable, currentPage)); - } - }); - - columns.add(new PropertyColumn<Document, String>(new Model<String>(getString("Document.typeDocument")), - "typeDocument.nom", "typeDocument.nom")); - - columns.add(new PropertyColumn<Document, String>(new Model<String>(getString("Document.createur")), "createur", - "createur")); - - columns.add(new LinkableImagePropertyColumn<Document, String>(new Model<String>(getString("Document.link")), - "images/download.png", getString("Document.link"), getString("Document.link")) { - @Override - public void onClick(Item<ICellPopulator<Document>> item, String componentId, IModel<Document> model) { - - Document document = model.getObject(); - WebResponse response = (WebResponse) getResponse(); - response.setContentType(document.getFileMimetype()); - response.setAttachmentHeader(document.getFileName()); - - OutputStream out = getResponse().getOutputStream(); - InputStream in = new ByteArrayInputStream(document.getFileContent()); - try { - IOUtils.copy(in, out); - } catch (IOException e) { - e.printStackTrace(); - } - } - }); - - final DataTable<Document, String> attachedDocumentTable = new AjaxFallbackDefaultDataTable<Document, String>( - "ListDocumentsPage.AttachedDocuments", columns, attachedDocumentsDataProvider, WebContext.ROWS_PER_PAGE); - - columns.add(new AjaxButtonPropertyColumn<Document, String>(new Model<String>(getString("Actions")), - new Model<String>(getString("Delete")), formView) { - @Override - public void onSubmit(AjaxRequestTarget target, Form<?> form, IModel<Document> model) { - Document document = model.getObject(); - documentAttachable.removeDocument(document); - - if (target != null) { - target.add(attachedDocumentTable); - refreshFeedbackPage(target); - } - } - }); - - attachedDocumentRefresh.add(attachedDocumentTable); - - // Action : création d'un nouveau document - // ajaxSubmitLink permet de sauvegarder l'état du formulaire - formView.add(new AjaxSubmitLink("NewDocument") { - @Override - protected void onSubmit(AjaxRequestTarget request, Form<?> form) { - setResponsePage(new ManageDocumentPage(currentPage, moleculeModel.getObject(), false)); - } - - // si erreur, le formulaire est également enregistré puis la redirection effectuée - @Override - protected void onError(AjaxRequestTarget target, Form<?> form) { - setResponsePage(new ManageDocumentPage(currentPage, moleculeModel.getObject(), false)); - } - }.setVisibilityAllowed(true)); - } - - /** * Redirection vers une autre page. Cas où le formulaire est validé */ private void redirect() { Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java 2013-02-21 12:30:01 UTC (rev 145) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java 2013-02-21 12:33:49 UTC (rev 146) @@ -22,27 +22,20 @@ */ package nc.ird.cantharella.web.pages.domain.molecule; -import java.io.ByteArrayInputStream; -import java.io.IOException; -import java.io.InputStream; -import java.io.OutputStream; import java.util.ArrayList; import java.util.List; import nc.ird.cantharella.data.exceptions.DataConstraintException; import nc.ird.cantharella.data.model.Campagne; -import nc.ird.cantharella.data.model.Document; import nc.ird.cantharella.data.model.Extrait; import nc.ird.cantharella.data.model.Fraction; import nc.ird.cantharella.data.model.Molecule; import nc.ird.cantharella.data.model.MoleculeProvenance; import nc.ird.cantharella.data.model.Personne; import nc.ird.cantharella.data.model.Produit; -import nc.ird.cantharella.data.model.utils.DocumentAttachable; import nc.ird.cantharella.service.services.MoleculeService; -import nc.ird.cantharella.web.config.WebContext; import nc.ird.cantharella.web.pages.TemplatePage; -import nc.ird.cantharella.web.pages.domain.document.ReadDocumentPage; +import nc.ird.cantharella.web.pages.domain.document.DocumentPageHelper; import nc.ird.cantharella.web.pages.domain.extraction.ReadExtractionPage; import nc.ird.cantharella.web.pages.domain.lot.ManageLotPage; import nc.ird.cantharella.web.pages.domain.personne.ReadPersonnePage; @@ -51,29 +44,20 @@ import nc.ird.cantharella.web.utils.behaviors.JSConfirmationBehavior; import nc.ird.cantharella.web.utils.behaviors.MoleculeViewBehavior; import nc.ird.cantharella.web.utils.behaviors.ReplaceEmptyLabelBehavior; -import nc.ird.cantharella.web.utils.columns.LinkPropertyColumn; -import nc.ird.cantharella.web.utils.columns.LinkableImagePropertyColumn; import nc.ird.cantharella.web.utils.forms.SubmittableButton; import nc.ird.cantharella.web.utils.forms.SubmittableButtonEvents; import nc.ird.cantharella.web.utils.models.DisplayBooleanPropertyModel; import nc.ird.cantharella.web.utils.models.DisplayDecimalPropertyModel; import nc.ird.cantharella.web.utils.models.DisplayDecimalPropertyModel.DecimalDisplFormat; import nc.ird.cantharella.web.utils.models.GenericLoadableDetachableModel; -import nc.ird.cantharella.web.utils.models.SimpleSortableListDataProvider; import nc.ird.cantharella.web.utils.panels.PropertyLabelLinkPanel; import nc.ird.cantharella.web.utils.panels.PropertyLabelLinkProduitPanel; import nc.ird.cantharella.web.utils.security.AuthRole; import nc.ird.cantharella.web.utils.security.AuthRoles; import nc.ird.cantharella.web.utils.security.AuthSession; -import org.apache.commons.io.IOUtils; import org.apache.wicket.AttributeModifier; import org.apache.wicket.MarkupContainer; -import org.apache.wicket.extensions.ajax.markup.html.repeater.data.table.AjaxFallbackDefaultDataTable; -import org.apache.wicket.extensions.markup.html.repeater.data.grid.ICellPopulator; -import org.apache.wicket.extensions.markup.html.repeater.data.table.DataTable; -import org.apache.wicket.extensions.markup.html.repeater.data.table.IColumn; -import org.apache.wicket.extensions.markup.html.repeater.data.table.PropertyColumn; import org.apache.wicket.markup.html.WebMarkupContainer; import org.apache.wicket.markup.html.basic.Label; import org.apache.wicket.markup.html.form.Button; @@ -82,12 +66,9 @@ import org.apache.wicket.markup.html.link.ResourceLink; import org.apache.wicket.markup.html.list.ListItem; import org.apache.wicket.markup.html.list.ListView; -import org.apache.wicket.markup.repeater.Item; import org.apache.wicket.model.IModel; import org.apache.wicket.model.LoadableDetachableModel; -import org.apache.wicket.model.Model; import org.apache.wicket.model.PropertyModel; -import org.apache.wicket.request.http.WebResponse; import org.apache.wicket.request.resource.ByteArrayResource; import org.apache.wicket.spring.injection.annot.SpringBean; @@ -103,14 +84,14 @@ public static final String ACTION_DELETE = "Delete"; /** Modèle : molecule */ - private final IModel<Molecule> moleculeModel; + private IModel<Molecule> moleculeModel; /** Service : molecule */ @SpringBean private MoleculeService moleculeService; /** Page appelante */ - private final CallerPage callerPage; + private CallerPage callerPage; /** * Constructor with molecule id to render. @@ -127,7 +108,7 @@ moleculeModel = new GenericLoadableDetachableModel<Molecule>(Molecule.class, idMolecule); initProvenanceFields(currentPage); - initAttachedDocumentsTable(moleculeModel.getObject(), currentPage); + DocumentPageHelper.initAttachedDocumentsReadTable(this, moleculeModel.getObject(), currentPage); add(new Label("Molecule.idMolecule", new PropertyModel<String>(moleculeModel, "idMolecule"))); add(new Label("Molecule.nomCommun", new PropertyModel<String>(moleculeModel, "nomCommun")) @@ -318,59 +299,4 @@ }; add(noTableProvenances); } - - /** - * Init attached document table for current entity. - * - * @param formView form to add table to - * @param documentAttachable entity to get documents - * @param currentPage current page - */ - private void initAttachedDocumentsTable(final DocumentAttachable documentAttachable, final CallerPage currentPage) { - - List<Document> documents = documentAttachable.getDocuments(); - - SimpleSortableListDataProvider<Document> attachedDocumentsDataProvider = new SimpleSortableListDataProvider<Document>( - documents, getSession().getLocale()); - - List<IColumn<Document, String>> columns = new ArrayList<IColumn<Document, String>>(); - - columns.add(new LinkPropertyColumn<Document, String>(new Model<String>(getString("Document.titre")), "titre", - "titre") { - @Override - public void onClick(Item<ICellPopulator<Document>> item, String componentId, IModel<Document> model) { - setResponsePage(new ReadDocumentPage(model.getObject(), documentAttachable, currentPage)); - } - }); - - columns.add(new PropertyColumn<Document, String>(new Model<String>(getString("Document.typeDocument")), - "typeDocument.nom", "typeDocument.nom")); - - columns.add(new PropertyColumn<Document, String>(new Model<String>(getString("Document.createur")), "createur", - "createur")); - - columns.add(new LinkableImagePropertyColumn<Document, String>(new Model<String>(getString("Document.link")), - "images/download.png", getString("Document.link"), getString("Document.link")) { - @Override - public void onClick(Item<ICellPopulator<Document>> item, String componentId, IModel<Document> model) { - - Document document = model.getObject(); - WebResponse response = (WebResponse) getResponse(); - response.setContentType(document.getFileMimetype()); - response.setAttachmentHeader(document.getFileName()); - - OutputStream out = getResponse().getOutputStream(); - InputStream in = new ByteArrayInputStream(document.getFileContent()); - try { - IOUtils.copy(in, out); - } catch (IOException e) { - e.printStackTrace(); - } - } - }); - - final DataTable<Document, String> attachedDocumentTable = new AjaxFallbackDefaultDataTable<Document, String>( - "ListDocumentsPage.AttachedDocuments", columns, attachedDocumentsDataProvider, WebContext.ROWS_PER_PAGE); - add(attachedDocumentTable); - } } Modified: trunk/cantharella.web/src/main/resources/cantharella.conf =================================================================== --- trunk/cantharella.web/src/main/resources/cantharella.conf 2013-02-21 12:30:01 UTC (rev 145) +++ trunk/cantharella.web/src/main/resources/cantharella.conf 2013-02-21 12:33:49 UTC (rev 146) @@ -36,4 +36,4 @@ # value for production #log4j.config=/home/tomcat/.config/log4j_prod.xml #document file max upload size (Mb) -document.maxUploadSize=1 \ No newline at end of file +document.maxUploadSize=1 Modified: trunk/cantharella.web/src/main/resources/web_en.properties =================================================================== --- trunk/cantharella.web/src/main/resources/web_en.properties 2013-02-21 12:30:01 UTC (rev 145) +++ trunk/cantharella.web/src/main/resources/web_en.properties 2013-02-21 12:33:49 UTC (rev 146) @@ -131,7 +131,7 @@ ListTestsBioPage2=Bioassays ListTestsBioPage.NewTestBio=New bioassay -ListDocumentsPage.NewDocument=New document +ListDocumentsPage.NewDocument=Attach new document ListDocumentsPage.AttachedDocuments=Attached documents ManageCampagnePage=Campaign management @@ -414,7 +414,7 @@ Document.link=Link Document.type=Type Document.file=File -Document.file.info=File size must be less than 1Mb +Document.file.info=File size must be less than ${0}Mb #BASIC# Actions=Actions Modified: trunk/cantharella.web/src/main/resources/web_fr.properties =================================================================== --- trunk/cantharella.web/src/main/resources/web_fr.properties 2013-02-21 12:30:01 UTC (rev 145) +++ trunk/cantharella.web/src/main/resources/web_fr.properties 2013-02-21 12:33:49 UTC (rev 146) @@ -130,7 +130,7 @@ ListTestsBioPage2=Tests biologiques ListTestsBioPage.NewTestBio=Nouveau test biologique -ListDocumentsPage.NewDocument=Nouveau document +ListDocumentsPage.NewDocument=Joindre un nouveau document ListDocumentsPage.AttachedDocuments=Document(s) attaché(s) ManageCampagnePage=Gestion d'une campagne @@ -412,7 +412,7 @@ Document.link=Lien Document.type=Type Document.file=Fichier -Document.file.info=La taille du fichier doit faire moins de 1Mo +Document.file.info=La taille du fichier doit faire moins de ${0}Mo #BASIC# Actions=Actions

1 0

r145 - trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/search
by echatellier＠users.forge.codelutin.com Feb. 21, 2013

Feb. 21, 2013

Author: echatellier Date: 2013-02-21 13:30:01 +0100 (Thu, 21 Feb 2013) New Revision: 145 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/145 Log: Fix back link to search page Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/search/SearchPage.java Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/search/SearchPage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/search/SearchPage.java 2013-02-21 12:15:33 UTC (rev 144) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/search/SearchPage.java 2013-02-21 12:30:01 UTC (rev 145) @@ -113,7 +113,7 @@ public SearchPage(String query) { super(SearchPage.class); this.query = query; - final CallerPage currentPage = new CallerPage(SearchPage.class); + final CallerPage currentPage = new CallerPage(this); // ca sert a rien, mais wicket est pas content ExternalLink link = new ExternalLink("advancedLink",

1 0

r144 - in trunk: cantharella.data/src/main/java/nc/ird/cantharella/data/model cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl
by echatellier＠users.forge.codelutin.com Feb. 21, 2013

Feb. 21, 2013

Author: echatellier Date: 2013-02-21 13:15:33 +0100 (Thu, 21 Feb 2013) New Revision: 144 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/144 Log: Correction des droits pour les mol?\195?\169cules (visible par tout le monde) Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java 2013-02-21 11:32:04 UTC (rev 143) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java 2013-02-21 12:15:33 UTC (rev 144) @@ -41,7 +41,6 @@ import javax.validation.constraints.NotNull; import nc.ird.cantharella.data.config.DataContext; -import nc.ird.cantharella.data.model.search.UtilisateurSearchFilter; import nc.ird.cantharella.data.model.utils.AbstractModel; import nc.ird.cantharella.data.model.utils.DocumentAttachable; @@ -49,8 +48,6 @@ import org.hibernate.annotations.CascadeType; import org.hibernate.annotations.Type; import org.hibernate.search.annotations.Field; -import org.hibernate.search.annotations.FullTextFilterDef; -import org.hibernate.search.annotations.FullTextFilterDefs; import org.hibernate.search.annotations.Indexed; import org.hibernate.search.annotations.IndexedEmbedded; import org.hibernate.validator.constraints.Length; @@ -63,7 +60,6 @@ */ @Entity @Indexed -@FullTextFilterDefs( { @FullTextFilterDef(name = "utilisateur-Molecule", impl = UtilisateurSearchFilter.class) }) public class Molecule extends AbstractModel implements DocumentAttachable { /** ID */ Modified: trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java =================================================================== --- trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java 2013-02-21 11:32:04 UTC (rev 143) +++ trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java 2013-02-21 12:15:33 UTC (rev 144) @@ -58,6 +58,7 @@ import org.hibernate.search.MassIndexer; import org.hibernate.search.Search; import org.hibernate.search.SearchFactory; +import org.hibernate.search.annotations.FullTextFilterDefs; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.stereotype.Service; @@ -211,9 +212,11 @@ // convert lucene query to hibernate query FullTextQuery hibQuery = fullTextSession.createFullTextQuery(query, clazz); - // add security filter - FullTextFilter filter = hibQuery.enableFullTextFilter("utilisateur-" + clazz.getSimpleName()); - filter.setParameter("utilisateur", utilisateur); + // add security filter (if class has filter defined) + if (clazz.getAnnotation(FullTextFilterDefs.class) != null) { + FullTextFilter filter = hibQuery.enableFullTextFilter("utilisateur-" + clazz.getSimpleName()); + filter.setParameter("utilisateur", utilisateur); + } return hibQuery; }

1 0

r143 - in trunk: cantharella.data/src/main/java/nc/ird/cantharella/data/model cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl
by echatellier＠users.forge.codelutin.com Feb. 21, 2013

Feb. 21, 2013

Author: echatellier Date: 2013-02-21 12:32:04 +0100 (Thu, 21 Feb 2013) New Revision: 143 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/143 Log: Exlude id from search query parser Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Campagne.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Extraction.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Lot.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/MethodeTestBio.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Produit.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Purification.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Specimen.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Station.java trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/TestBio.java trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Campagne.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Campagne.java 2013-02-21 09:37:08 UTC (rev 142) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Campagne.java 2013-02-21 11:32:04 UTC (rev 143) @@ -49,9 +49,7 @@ import org.hibernate.annotations.Cascade; import org.hibernate.annotations.CascadeType; import org.hibernate.annotations.Type; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.Field; -import org.hibernate.search.annotations.Index; import org.hibernate.search.annotations.Store; import org.hibernate.validator.constraints.Length; import org.hibernate.validator.constraints.NotEmpty; @@ -76,7 +74,7 @@ @NotNull @NotEmpty @Length(max = LENGTH_MEDIUM_TEXT) - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field(store = Store.YES) private String nom; /** Code pays */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Extraction.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Extraction.java 2013-02-21 09:37:08 UTC (rev 142) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Extraction.java 2013-02-21 11:32:04 UTC (rev 143) @@ -52,12 +52,10 @@ import org.hibernate.annotations.Cascade; import org.hibernate.annotations.CascadeType; import org.hibernate.annotations.Type; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.ContainedIn; import org.hibernate.search.annotations.Field; import org.hibernate.search.annotations.FullTextFilterDef; import org.hibernate.search.annotations.FullTextFilterDefs; -import org.hibernate.search.annotations.Index; import org.hibernate.search.annotations.Indexed; import org.hibernate.search.annotations.IndexedEmbedded; import org.hibernate.search.annotations.Store; @@ -82,7 +80,7 @@ @Length(max = LENGTH_MEDIUM_TEXT) @Column(unique = true) @NotEmpty - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field(store = Store.YES) private String ref; /** Manipulateur */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Lot.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Lot.java 2013-02-21 09:37:08 UTC (rev 142) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Lot.java 2013-02-21 11:32:04 UTC (rev 143) @@ -50,11 +50,9 @@ import org.apache.commons.beanutils.BeanComparator; import org.hibernate.annotations.Type; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.Field; import org.hibernate.search.annotations.FullTextFilterDef; import org.hibernate.search.annotations.FullTextFilterDefs; -import org.hibernate.search.annotations.Index; import org.hibernate.search.annotations.Indexed; import org.hibernate.search.annotations.IndexedEmbedded; import org.hibernate.search.annotations.Store; @@ -82,7 +80,7 @@ @Column(unique = true) @NotEmpty @Length(max = LENGTH_MEDIUM_TEXT) - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field(store = Store.YES) private String ref; /** Campagne */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/MethodeTestBio.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/MethodeTestBio.java 2013-02-21 09:37:08 UTC (rev 142) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/MethodeTestBio.java 2013-02-21 11:32:04 UTC (rev 143) @@ -33,10 +33,7 @@ import org.apache.commons.beanutils.BeanComparator; import org.hibernate.annotations.Type; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.Field; -import org.hibernate.search.annotations.Index; -import org.hibernate.search.annotations.Store; import org.hibernate.validator.constraints.Length; import org.hibernate.validator.constraints.NotEmpty; @@ -57,14 +54,14 @@ @Length(max = LENGTH_MEDIUM_TEXT) @Column(unique = true) @NotEmpty - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field private String nom; /** Cible pour un test (acronyme du nom de méthode) */ @Length(max = LENGTH_MEDIUM_TEXT) @Column(unique = true) @NotEmpty - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field private String cible; /** Domaine de recherche pour le test */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java 2013-02-21 09:37:08 UTC (rev 142) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Molecule.java 2013-02-21 11:32:04 UTC (rev 143) @@ -48,14 +48,11 @@ import org.hibernate.annotations.Cascade; import org.hibernate.annotations.CascadeType; import org.hibernate.annotations.Type; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.Field; import org.hibernate.search.annotations.FullTextFilterDef; import org.hibernate.search.annotations.FullTextFilterDefs; -import org.hibernate.search.annotations.Index; import org.hibernate.search.annotations.Indexed; import org.hibernate.search.annotations.IndexedEmbedded; -import org.hibernate.search.annotations.Store; import org.hibernate.validator.constraints.Length; import org.hibernate.validator.constraints.NotEmpty; @@ -77,12 +74,12 @@ /** Nom commun */ @Length(max = LENGTH_LONG_TEXT) - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field private String nomCommun; /** Famille chimique */ @Length(max = LENGTH_MEDIUM_TEXT) - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field private String familleChimique; /** Famille developpée */ @@ -93,7 +90,7 @@ /** Nom IUPAC */ @Length(max = LENGTH_BIG_TEXT) - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field private String nomIupca; /** Formule brute */ @@ -117,7 +114,7 @@ /** Identifiee par. */ @Length(max = LENGTH_MEDIUM_TEXT) - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field private String identifieePar; /** Publication d'origine */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Produit.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Produit.java 2013-02-21 09:37:08 UTC (rev 142) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Produit.java 2013-02-21 11:32:04 UTC (rev 143) @@ -43,7 +43,6 @@ import nc.ird.cantharella.data.model.utils.AbstractModel; import org.apache.commons.beanutils.BeanComparator; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.ClassBridge; import org.hibernate.search.annotations.ContainedIn; import org.hibernate.search.annotations.Field; @@ -70,7 +69,7 @@ @Length(max = LENGTH_MEDIUM_TEXT) @NotEmpty @Column(unique = true) - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field(store = Store.YES) private String ref; /** Masse obtenue pour le produit **/ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Purification.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Purification.java 2013-02-21 09:37:08 UTC (rev 142) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Purification.java 2013-02-21 11:32:04 UTC (rev 143) @@ -54,11 +54,9 @@ import org.hibernate.annotations.Cascade; import org.hibernate.annotations.CascadeType; import org.hibernate.annotations.Type; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.Field; import org.hibernate.search.annotations.FullTextFilterDef; import org.hibernate.search.annotations.FullTextFilterDefs; -import org.hibernate.search.annotations.Index; import org.hibernate.search.annotations.Indexed; import org.hibernate.search.annotations.IndexedEmbedded; import org.hibernate.search.annotations.Store; @@ -83,7 +81,7 @@ @Length(max = LENGTH_MEDIUM_TEXT) @Column(unique = true) @NotEmpty - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field(store = Store.YES) private String ref; /** Manipulateur */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Specimen.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Specimen.java 2013-02-21 09:37:08 UTC (rev 142) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Specimen.java 2013-02-21 11:32:04 UTC (rev 143) @@ -44,11 +44,9 @@ import org.apache.commons.beanutils.BeanComparator; import org.hibernate.annotations.Type; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.Field; import org.hibernate.search.annotations.FullTextFilterDef; import org.hibernate.search.annotations.FullTextFilterDefs; -import org.hibernate.search.annotations.Index; import org.hibernate.search.annotations.Indexed; import org.hibernate.search.annotations.IndexedEmbedded; import org.hibernate.search.annotations.Store; @@ -96,28 +94,28 @@ @Column(unique = true) @NotEmpty @Length(max = LENGTH_TINY_TEXT) - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field(store = Store.YES) private String ref; /** Embranchement */ @Length(max = LENGTH_MEDIUM_TEXT) @NotEmpty - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field private String embranchement; /** Famille */ @Length(max = LENGTH_MEDIUM_TEXT) - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field private String famille; /** Genre */ @Length(max = LENGTH_MEDIUM_TEXT) - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field private String genre; /** Espèce */ @Length(max = LENGTH_MEDIUM_TEXT) - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field private String espece; /** Sous-espèce */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Station.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Station.java 2013-02-21 09:37:08 UTC (rev 142) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/Station.java 2013-02-21 11:32:04 UTC (rev 143) @@ -48,14 +48,11 @@ import org.apache.commons.beanutils.BeanComparator; import org.hibernate.annotations.AccessType; import org.hibernate.annotations.Type; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.Field; import org.hibernate.search.annotations.FullTextFilterDef; import org.hibernate.search.annotations.FullTextFilterDefs; -import org.hibernate.search.annotations.Index; import org.hibernate.search.annotations.Indexed; import org.hibernate.search.annotations.IndexedEmbedded; -import org.hibernate.search.annotations.Store; import org.hibernate.validator.constraints.Length; import org.hibernate.validator.constraints.NotEmpty; @@ -81,14 +78,14 @@ @Column(unique = true) @NotEmpty @Length(max = LENGTH_MEDIUM_TEXT) - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field private String nom; /** Code pays */ @NotNull @Length(min = 2, max = 2) @CountryCode - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field private String codePays; /** Complément */ @@ -105,7 +102,7 @@ /** Localité */ @Length(max = LENGTH_MEDIUM_TEXT) - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field private String localite; /** Latitude */ Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/TestBio.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/TestBio.java 2013-02-21 09:37:08 UTC (rev 142) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/model/TestBio.java 2013-02-21 11:32:04 UTC (rev 143) @@ -56,10 +56,8 @@ import org.hibernate.annotations.Cascade; import org.hibernate.annotations.CascadeType; import org.hibernate.annotations.Type; -import org.hibernate.search.annotations.Analyze; import org.hibernate.search.annotations.ContainedIn; import org.hibernate.search.annotations.Field; -import org.hibernate.search.annotations.Index; import org.hibernate.search.annotations.IndexedEmbedded; import org.hibernate.search.annotations.Store; import org.hibernate.validator.constraints.Length; @@ -82,7 +80,7 @@ @Length(max = LENGTH_MEDIUM_TEXT) @Column(unique = true) @NotEmpty - @Field(index = Index.YES, analyze = Analyze.YES, store = Store.YES) + @Field(store = Store.YES) private String ref; /** Manipulateur */ Modified: trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java =================================================================== --- trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java 2013-02-21 09:37:08 UTC (rev 142) +++ trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java 2013-02-21 11:32:04 UTC (rev 143) @@ -22,6 +22,7 @@ */ package nc.ird.cantharella.service.services.impl; +import java.util.ArrayList; import java.util.Collections; import java.util.List; @@ -187,11 +188,17 @@ // build a multi field query parser to search in all fields IndexReader reader = searchFactory.getIndexReaderAccessor().open(clazz); FieldInfos fieldInfos = ReaderUtil.getMergedFieldInfos(reader); - String[] fieldArray = new String[fieldInfos.size()]; + List<String> fieldList = new ArrayList<>(); for (int i = 0; i < fieldInfos.size(); i++) { - fieldArray[i] = fieldInfos.fieldName(i); + String fieldName = fieldInfos.fieldName(i); + // il semble impossible de ne pas recuperer l'id du document + // on l'exclut donc manuellement + if (!fieldName.startsWith("id") && !fieldName.contains(".id")) { + fieldList.add(fieldInfos.fieldName(i)); + } } - QueryParser parser = new MultiFieldQueryParser(Version.LUCENE_36, fieldArray, searchFactory.getAnalyzer(clazz)); + QueryParser parser = new MultiFieldQueryParser(Version.LUCENE_36, fieldList.toArray(new String[fieldList.size()]), + searchFactory.getAnalyzer(clazz)); searchFactory.getIndexReaderAccessor().close(reader); // autorisation de "*" en premier caractere

1 0

r142 - in trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services: . impl
by echatellier＠users.forge.codelutin.com Feb. 21, 2013

Feb. 21, 2013

Author: echatellier Date: 2013-02-21 10:37:08 +0100 (Thu, 21 Feb 2013) New Revision: 142 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/142 Log: Manage null or empty query to return empty lists Modified: trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/SearchService.java trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java Modified: trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/SearchService.java =================================================================== --- trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/SearchService.java 2013-02-21 09:34:24 UTC (rev 141) +++ trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/SearchService.java 2013-02-21 09:37:08 UTC (rev 142) @@ -42,7 +42,7 @@ /** * Search for query result into data model. * - * @param query query + * @param query query (null value handled : return empty lists) * @param utilisateur utilisateur to filter results * @return search result */ Modified: trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java =================================================================== --- trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java 2013-02-21 09:34:24 UTC (rev 141) +++ trunk/cantharella.service/src/main/java/nc/ird/cantharella/service/services/impl/SearchServiceImpl.java 2013-02-21 09:37:08 UTC (rev 142) @@ -22,6 +22,7 @@ */ package nc.ird.cantharella.service.services.impl; +import java.util.Collections; import java.util.List; import javax.annotation.Resource; @@ -38,6 +39,7 @@ import nc.ird.cantharella.service.model.SearchResult; import nc.ird.cantharella.service.services.SearchService; +import org.apache.commons.lang3.StringUtils; import org.apache.lucene.index.FieldInfos; import org.apache.lucene.index.IndexReader; import org.apache.lucene.queryParser.MultiFieldQueryParser; @@ -117,25 +119,37 @@ //fullTextSession.setCacheMode(CacheMode.IGNORE); try { - // wrap Lucene query in a org.hibernate.Query - org.hibernate.Query hibSpecimen = getQuery(fullTextSession, Specimen.class, strQuery, utilisateur); - org.hibernate.Query hibLot = getQuery(fullTextSession, Lot.class, strQuery, utilisateur); - org.hibernate.Query hibExtraction = getQuery(fullTextSession, Extraction.class, strQuery, utilisateur); - org.hibernate.Query hibPurification = getQuery(fullTextSession, Purification.class, strQuery, utilisateur); - org.hibernate.Query hibResultatTestBio = getQuery(fullTextSession, ResultatTestBio.class, strQuery, - utilisateur); - org.hibernate.Query hibStation = getQuery(fullTextSession, Station.class, strQuery, utilisateur); - org.hibernate.Query hibMolecule = getQuery(fullTextSession, Molecule.class, strQuery, utilisateur); - // execute search - List<Specimen> specimens = hibSpecimen.list(); - List<Lot> lots = hibLot.list(); - List<Extraction> extractions = hibExtraction.list(); - List<Purification> purifications = hibPurification.list(); - List<ResultatTestBio> resultatTestBios = hibResultatTestBio.list(); - List<Station> resultatStations = hibStation.list(); - List<Molecule> resultatMolecules = hibMolecule.list(); + // default init to empty list if query is null or empty + List<Specimen> specimens = Collections.EMPTY_LIST; + List<Lot> lots = Collections.EMPTY_LIST; + List<Extraction> extractions = Collections.EMPTY_LIST; + List<Purification> purifications = Collections.EMPTY_LIST; + List<ResultatTestBio> resultatTestBios = Collections.EMPTY_LIST; + List<Station> resultatStations = Collections.EMPTY_LIST; + List<Molecule> resultatMolecules = Collections.EMPTY_LIST; + if (StringUtils.isNotEmpty(strQuery)) { + // wrap Lucene query in a org.hibernate.Query + org.hibernate.Query hibSpecimen = getQuery(fullTextSession, Specimen.class, strQuery, utilisateur); + org.hibernate.Query hibLot = getQuery(fullTextSession, Lot.class, strQuery, utilisateur); + org.hibernate.Query hibExtraction = getQuery(fullTextSession, Extraction.class, strQuery, utilisateur); + org.hibernate.Query hibPurification = getQuery(fullTextSession, Purification.class, strQuery, utilisateur); + org.hibernate.Query hibResultatTestBio = getQuery(fullTextSession, ResultatTestBio.class, strQuery, + utilisateur); + org.hibernate.Query hibStation = getQuery(fullTextSession, Station.class, strQuery, utilisateur); + org.hibernate.Query hibMolecule = getQuery(fullTextSession, Molecule.class, strQuery, utilisateur); + + // perform search + specimens = hibSpecimen.list(); + lots = hibLot.list(); + extractions = hibExtraction.list(); + purifications = hibPurification.list(); + resultatTestBios = hibResultatTestBio.list(); + resultatStations = hibStation.list(); + resultatMolecules = hibMolecule.list(); + } + result.setSpecimens(specimens); result.setLots(lots); result.setExtractions(extractions);

1 0

r141 - trunk
by echatellier＠users.forge.codelutin.com Feb. 21, 2013

Feb. 21, 2013

Author: echatellier Date: 2013-02-21 10:34:24 +0100 (Thu, 21 Feb 2013) New Revision: 141 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/141 Log: Update to wicket 6.6.0 Modified: trunk/pom.xml Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2013-02-20 15:40:59 UTC (rev 140) +++ trunk/pom.xml 2013-02-21 09:34:24 UTC (rev 141) @@ -139,7 +139,7 @@ <version.poi>3.9</version.poi> <version.nuiton-utils>2.6.8</version.nuiton-utils> <version.servlet-api>2.5</version.servlet-api> - <version.wicket>6.5.0</version.wicket> + <version.wicket>6.6.0</version.wicket> <!-- FIXME echatellier Probleme de parallelisation des tests unitaire, cause org.hibernate.HibernateException: Don't change the reference to a collection

1 0

r140 - in trunk: cantharella.data/src/main/java/nc/ird/cantharella/data/config cantharella.data/src/main/resources cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule cantharella.web/src/main/resources
by echatellier＠users.forge.codelutin.com Feb. 20, 2013

Feb. 20, 2013

Author: echatellier Date: 2013-02-20 16:40:59 +0100 (Wed, 20 Feb 2013) New Revision: 140 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/140 Log: Ajout d'infobulle manquante. Passage des valeurs fixe en configuration. Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/config/DataContext.java trunk/cantharella.data/src/main/resources/cantharella.conf trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/ManageDocumentPage.html trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/ManageDocumentPage.java trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.html trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java trunk/cantharella.web/src/main/resources/cantharella.conf trunk/cantharella.web/src/main/resources/web_en.properties trunk/cantharella.web/src/main/resources/web_fr.properties Modified: trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/config/DataContext.java =================================================================== --- trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/config/DataContext.java 2013-02-20 14:57:34 UTC (rev 139) +++ trunk/cantharella.data/src/main/java/nc/ird/cantharella/data/config/DataContext.java 2013-02-20 15:40:59 UTC (rev 140) @@ -168,11 +168,23 @@ protected String dbUserProperty; /** - * DB user + * Hibernate schema validation property. */ - @Value("${db.hbm2ddl:validate}") + @Value("${db.hbm2ddl}") protected String hbm2ddl; + /** + * Hibernate search lucene index location on filesystem. + */ + @Value("${hibernate.search.indexBase}") + protected String hibernateSearchIndexBase; + + /** + * Hibernate search analyzer. + */ + @Value("${hibernate.search.analyzer}") + protected String hibernateSearchAnalyzer; + static { // The first Locale in the list is the default one List<Locale> locales = new ArrayList<Locale>(); @@ -295,8 +307,8 @@ //hibernateProperties.setProperty("hibernate.c3p0.min_size", String.valueOf(DB_POOL_MIN_SIZE)); // minPoolSize // Hibernate search hibernateProperties.setProperty("hibernate.search.default.directory_provider", "filesystem"); - hibernateProperties.setProperty("hibernate.search.default.indexBase", "/tmp/cantharella/hs"); - hibernateProperties.setProperty("hibernate.search.analyzer", "org.apache.lucene.analysis.fr.FrenchAnalyzer"); + hibernateProperties.setProperty("hibernate.search.default.indexBase", hibernateSearchIndexBase); + hibernateProperties.setProperty("hibernate.search.analyzer", hibernateSearchAnalyzer); // Hibernate: Session //hibernateProperties.setProperty("hibernate.current_session_context_class", "thread"); Modified: trunk/cantharella.data/src/main/resources/cantharella.conf =================================================================== --- trunk/cantharella.data/src/main/resources/cantharella.conf 2013-02-20 14:57:34 UTC (rev 139) +++ trunk/cantharella.data/src/main/resources/cantharella.conf 2013-02-20 15:40:59 UTC (rev 140) @@ -31,3 +31,8 @@ # value for production #db.debug=false db.hbm2ddl=validate + +# Hibernate search lucene index location on filesystem. +hibernate.search.indexBase=/tmp/cantharella +# Hibernate search analyzer +hibernate.search.analyzer=org.apache.lucene.analysis.fr.FrenchAnalyzer \ No newline at end of file Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/ManageDocumentPage.html =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/ManageDocumentPage.html 2013-02-20 14:57:34 UTC (rev 139) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/ManageDocumentPage.html 2013-02-20 15:40:59 UTC (rev 140) @@ -84,7 +84,8 @@ </div> <div class="property required"> - <label for="Document.file"><wicket:message key="Document.file" /></label> + <label for="Document.file"><wicket:message key="Document.file" /> + <wicket:container wicket:id="Document.file.info"/></label> <input type="file" id="Document.file" wicket:id="Document.file" /> </div> Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/ManageDocumentPage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/ManageDocumentPage.java 2013-02-20 14:57:34 UTC (rev 139) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/document/ManageDocumentPage.java 2013-02-20 15:40:59 UTC (rev 140) @@ -44,6 +44,7 @@ import nc.ird.cantharella.web.utils.forms.SubmittableButton; import nc.ird.cantharella.web.utils.forms.SubmittableButtonEvents; import nc.ird.cantharella.web.utils.forms.AutoCompleteTextFieldString.ComparisonMode; +import nc.ird.cantharella.web.utils.panels.SimpleTooltipPanel; import nc.ird.cantharella.web.utils.renderers.MapChoiceRenderer; import org.apache.wicket.ajax.AjaxRequestTarget; @@ -67,6 +68,7 @@ import org.apache.wicket.util.lang.Bytes; import org.slf4j.Logger; import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Value; /** * Document management page (creation/edition). @@ -108,6 +110,10 @@ /** Multiple entry. */ private boolean multipleEntry; + /** Configuration document max upload size. */ + @Value("${document.maxUploadSize}") + protected long documentMaxUploadSize; + /** * Constructeur (mode création) * @param callerPage Page appelante @@ -189,7 +195,7 @@ } }; formView.setMultiPart(true); - formView.setMaxSize(Bytes.megabytes(1)); + formView.setMaxSize(Bytes.megabytes(documentMaxUploadSize)); formView.add(new TextField<String>("Document.titre", new PropertyModel<String>(documentModel, "titre"))); @@ -261,6 +267,7 @@ }); // Fichier + formView.add(new SimpleTooltipPanel("Document.file.info", new Model<String>(getString("Document.file.info")))); formView.add(fileUploadField); // Action : création du document Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.html =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.html 2013-02-20 14:57:34 UTC (rev 139) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.html 2013-02-20 15:40:59 UTC (rev 140) @@ -48,8 +48,9 @@ </div> <div class="property required"> - <label for="Molecule.formuleBrute"><wicket:message key="Molecule.formuleBrute" /></label> - <input type="text" id="Molecule.formuleBrute" wicket:id="Molecule.formuleBrute" /> + <label for="Molecule.formuleBrute"><wicket:message key="Molecule.formuleBrute" /> + <wicket:container wicket:id="Molecule.formuleBrute.info"/></label> + <input type="text" id="Molecule.formuleBrute" wicket:id="Molecule.formuleBrute" /> </div> <div class="property required"> @@ -61,7 +62,8 @@ <legend><wicket:message key="Molecule.nouvMolecul" /></legend> <div class="property"> - <label for="Molecule.nouvMolecul"><wicket:message key="Molecule.nouvMolecul" /></label> + <label for="Molecule.nouvMolecul"><wicket:message key="Molecule.nouvMolecul" /> + <wicket:container wicket:id="Molecule.nouvMolecul.info"/></label> <input type="checkbox" id="Molecule.nouvMolecul" wicket:id="Molecule.nouvMolecul" /> </div> Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java 2013-02-20 14:57:34 UTC (rev 139) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java 2013-02-20 15:40:59 UTC (rev 140) @@ -69,6 +69,7 @@ import nc.ird.cantharella.web.utils.models.DisplayDecimalPropertyModel.DecimalDisplFormat; import nc.ird.cantharella.web.utils.models.SimpleSortableListDataProvider; import nc.ird.cantharella.web.utils.panels.PropertyLabelLinkProduitPanel; +import nc.ird.cantharella.web.utils.panels.SimpleTooltipPanel; import nc.ird.cantharella.web.utils.security.AuthRole; import nc.ird.cantharella.web.utils.security.AuthRoles; import nc.ird.cantharella.web.utils.security.AuthSession; @@ -227,6 +228,8 @@ formView.add(new TextField<String>("Molecule.nomIupca", new PropertyModel<String>(moleculeModel, "nomIupca")) .setEnabled(editEnabled)); + formView.add(new SimpleTooltipPanel("Molecule.formuleBrute.info", new Model<String>( + getString("Molecule.formuleBrute.info")))); formView.add(new TextField<String>("Molecule.formuleBrute", new PropertyModel<String>(moleculeModel, "formuleBrute")).setEnabled(editEnabled)); @@ -243,6 +246,8 @@ formView.add(nouvMoleculRefresh); // predéclaration des champs activé par la chec + formView.add(new SimpleTooltipPanel("Molecule.nouvMolecul.info", new Model<String>( + getString("Molecule.nouvMolecul.info")))); formView.add(new CheckBox("Molecule.nouvMolecul", new PropertyModel<Boolean>(moleculeModel, "nouvMolecul")) { @Override protected void onSelectionChanged(Boolean newSelection) { Modified: trunk/cantharella.web/src/main/resources/cantharella.conf =================================================================== --- trunk/cantharella.web/src/main/resources/cantharella.conf 2013-02-20 14:57:34 UTC (rev 139) +++ trunk/cantharella.web/src/main/resources/cantharella.conf 2013-02-20 15:40:59 UTC (rev 140) @@ -35,4 +35,5 @@ log4j.config=classpath:log4j.xml # value for production #log4j.config=/home/tomcat/.config/log4j_prod.xml - +#document file max upload size (Mb) +document.maxUploadSize=1 \ No newline at end of file Modified: trunk/cantharella.web/src/main/resources/web_en.properties =================================================================== --- trunk/cantharella.web/src/main/resources/web_en.properties 2013-02-20 14:57:34 UTC (rev 139) +++ trunk/cantharella.web/src/main/resources/web_en.properties 2013-02-20 15:40:59 UTC (rev 140) @@ -384,6 +384,8 @@ Molecule.masseMolaire.Required=Molar mass - can’t be null Molecule.masseMolaire.IConverter.BigDecimal=Molar mass - must be a decimal number Molecule.downloadMolFile=Download .mol file +Molecule.formuleBrute.info=Specify in order : Carbon, Hydrogen and then alphabetically +Molecule.nouvMolecul.info=All users can see molecules. Make sure that molecule is properly published. TestBio.date.IConverter.Date=The date is incorrectly formatted (DD/MM/YY) TestBio.concMasseDefaut.IConverter.BigDecimal=Default Conc./Mass - must be a decimal number @@ -412,6 +414,7 @@ Document.link=Link Document.type=Type Document.file=File +Document.file.info=File size must be less than 1Mb #BASIC# Actions=Actions Modified: trunk/cantharella.web/src/main/resources/web_fr.properties =================================================================== --- trunk/cantharella.web/src/main/resources/web_fr.properties 2013-02-20 14:57:34 UTC (rev 139) +++ trunk/cantharella.web/src/main/resources/web_fr.properties 2013-02-20 15:40:59 UTC (rev 140) @@ -382,6 +382,8 @@ Molecule.masseMolaire.Required=Masse molaire - ne peut être nul Molecule.masseMolaire.IConverter.BigDecimal=Masse molaire - doit être un nombre décimal Molecule.downloadMolFile=Télécharger au format mol +Molecule.formuleBrute.info=Indiquez dans l'ordre : Carbone, Hydrogène puis ordre alphabetique +Molecule.nouvMolecul.info=Les molécules sont visibles par tous les utilsateurs. Attention à ce que la molécule soit bien publiée. TestBio.date.IConverter.Date=La date est mal formatée (JJ/MM/AA) TestBio.concMasseDefaut.IConverter.BigDecimal=Conc./Masse par défaut - doit être un nombre décimal @@ -410,6 +412,7 @@ Document.link=Lien Document.type=Type Document.file=Fichier +Document.file.info=La taille du fichier doit faire moins de 1Mo #BASIC# Actions=Actions

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r139 - trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule
by echatellier＠users.forge.codelutin.com Feb. 20, 2013

Feb. 20, 2013

Author: echatellier Date: 2013-02-20 15:57:34 +0100 (Wed, 20 Feb 2013) New Revision: 139 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/139 Log: Format code Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java 2013-02-20 14:49:43 UTC (rev 138) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java 2013-02-20 14:57:34 UTC (rev 139) @@ -220,10 +220,9 @@ "formuleDevMol")).add(new MoleculeEditorBehavior(new PropertyModel<String>(moleculeModel, "formuleDevMol")))); } else { - formView - .add(new HiddenField<String>("Molecule.formuleDevMol", new PropertyModel<String>(moleculeModel, - "formuleDevMol")).setEnabled(false) // important otherwise, loose data - .add(new MoleculeViewBehavior(new PropertyModel<String>(moleculeModel, "formuleDevMol"), true))); + formView.add(new HiddenField<String>("Molecule.formuleDevMol", new PropertyModel<String>(moleculeModel, + "formuleDevMol")).setEnabled(false) // important otherwise, loose data + .add(new MoleculeViewBehavior(new PropertyModel<String>(moleculeModel, "formuleDevMol"), true))); } formView.add(new TextField<String>("Molecule.nomIupca", new PropertyModel<String>(moleculeModel, "nomIupca")) Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java 2013-02-20 14:49:43 UTC (rev 138) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java 2013-02-20 14:57:34 UTC (rev 139) @@ -137,8 +137,8 @@ add(new Label("Molecule.formuleDevMol", new PropertyModel<String>(moleculeModel, "formuleDevMol")).add( new ReplaceEmptyLabelBehavior()).add( new MoleculeViewBehavior(new PropertyModel<String>(moleculeModel, "formuleDevMol"), true))); - add(new ResourceLink<Molecule>("DownloadMolFile", new ByteArrayResource("chemical/x-mdl-molfile", - moleculeModel.getObject().getFormuleDevMol().getBytes(), "molecule.mol"))); + add(new ResourceLink<Molecule>("DownloadMolFile", new ByteArrayResource("chemical/x-mdl-molfile", moleculeModel + .getObject().getFormuleDevMol().getBytes(), "molecule.mol"))); add(new Label("Molecule.nomIupca", new PropertyModel<String>(moleculeModel, "nomIupca")) .add(new ReplaceEmptyLabelBehavior())); add(new Label("Molecule.formuleBrute", new PropertyModel<String>(moleculeModel, "formuleBrute")) @@ -281,7 +281,8 @@ } }); - item.add(new Label("Molecule.provenance.List.presence", new DisplayDecimalPropertyModel(provenanceModel, + item.add( + new Label("Molecule.provenance.List.presence", new DisplayDecimalPropertyModel(provenanceModel, "pourcentage", DecimalDisplFormat.SMALL, getLocale()))).add( new ReplaceEmptyLabelBehavior()); if (provenanceModel.getObject().getProduit() instanceof Fraction) {

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r138 - trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule
by echatellier＠users.forge.codelutin.com Feb. 20, 2013

Feb. 20, 2013

Author: echatellier Date: 2013-02-20 15:49:43 +0100 (Wed, 20 Feb 2013) New Revision: 138 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/138 Log: Fix provenance table in molecule read page Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java 2013-02-20 14:35:29 UTC (rev 137) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java 2013-02-20 14:49:43 UTC (rev 138) @@ -281,18 +281,28 @@ } }); - item.add( - new Label("Molecule.provenance.List.presence", new DisplayDecimalPropertyModel(provenanceModel, + item.add(new Label("Molecule.provenance.List.presence", new DisplayDecimalPropertyModel(provenanceModel, "pourcentage", DecimalDisplFormat.SMALL, getLocale()))).add( new ReplaceEmptyLabelBehavior()); - item.add(new Label("Molecule.provenance.List.lot.ref", new PropertyModel<String>(provenanceModel, - "pourcentage")).add(new ReplaceEmptyLabelBehavior())); - item.add(new Label("Molecule.provenance.List.genre", new PropertyModel<String>(provenanceModel, - "pourcentage")).add(new ReplaceEmptyLabelBehavior())); - item.add(new Label("Molecule.provenance.List.espece", new PropertyModel<String>(provenanceModel, - "pourcentage")).add(new ReplaceEmptyLabelBehavior())); - item.add(new Label("Molecule.provenance.List.campagne", new PropertyModel<String>(provenanceModel, - "pourcentage")).add(new ReplaceEmptyLabelBehavior())); + if (provenanceModel.getObject().getProduit() instanceof Fraction) { + item.add(new Label("Molecule.provenance.List.lot.ref", new PropertyModel<String>(provenanceModel, + "produit.purification.lotSource.ref"))); + item.add(new Label("Molecule.provenance.List.genre", new PropertyModel<String>(provenanceModel, + "produit.purification.lotSource.specimenRef.genre"))); + item.add(new Label("Molecule.provenance.List.espece", new PropertyModel<String>(provenanceModel, + "produit.purification.lotSource.specimenRef.espece"))); + item.add(new Label("Molecule.provenance.List.campagne", new PropertyModel<String>(provenanceModel, + "produit.purification.lotSource.campagne.nom"))); + } else { + item.add(new Label("Molecule.provenance.List.lot.ref", new PropertyModel<String>(provenanceModel, + "produit.extraction.lot.ref"))); + item.add(new Label("Molecule.provenance.List.genre", new PropertyModel<String>(provenanceModel, + "produit.extraction.lot.specimenRef.genre"))); + item.add(new Label("Molecule.provenance.List.espece", new PropertyModel<String>(provenanceModel, + "produit.extraction.lot.specimenRef.espece"))); + item.add(new Label("Molecule.provenance.List.campagne", new PropertyModel<String>(provenanceModel, + "produit.extraction.lot.campagne.nom"))); + } } }; provenanceTable.add(provenanceListView);

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r137 - in trunk/cantharella.web/src/main: java/nc/ird/cantharella/web/pages/domain/molecule java/nc/ird/cantharella/web/utils/behaviors resources webapp/js
by echatellier＠users.forge.codelutin.com Feb. 20, 2013

Feb. 20, 2013

Author: echatellier Date: 2013-02-20 15:35:29 +0100 (Wed, 20 Feb 2013) New Revision: 137 Url: http://forge.codelutin.com/projects/cantharella/repository/revisions/137 Log: Fix linkable canvas to download image and add download mol file link Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.html trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/utils/behaviors/MoleculeViewBehavior.java trunk/cantharella.web/src/main/resources/web_en.properties trunk/cantharella.web/src/main/resources/web_fr.properties trunk/cantharella.web/src/main/webapp/js/molviewer.js Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java 2013-02-20 06:06:04 UTC (rev 136) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ManageMoleculePage.java 2013-02-20 14:35:29 UTC (rev 137) @@ -223,9 +223,7 @@ formView .add(new HiddenField<String>("Molecule.formuleDevMol", new PropertyModel<String>(moleculeModel, "formuleDevMol")).setEnabled(false) // important otherwise, loose data - .add( - new MoleculeViewBehavior(new PropertyModel<String>(moleculeModel, "formuleDevMol"), - 500, 300))); + .add(new MoleculeViewBehavior(new PropertyModel<String>(moleculeModel, "formuleDevMol"), true))); } formView.add(new TextField<String>("Molecule.nomIupca", new PropertyModel<String>(moleculeModel, "nomIupca")) Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.html =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.html 2013-02-20 06:06:04 UTC (rev 136) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.html 2013-02-20 14:35:29 UTC (rev 137) @@ -42,7 +42,8 @@ <div class="property"> <span class="label"><wicket:message key="Molecule.formuleDevMol" /></span> - <span class="value" wicket:id="Molecule.formuleDevMol"></span> + <div><span class="value" wicket:id="Molecule.formuleDevMol"></span><br /> + <a wicket:id="DownloadMolFile"><wicket:message key="Molecule.downloadMolFile" /></a></div> </div> <div class="property"> Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java 2013-02-20 06:06:04 UTC (rev 136) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/pages/domain/molecule/ReadMoleculePage.java 2013-02-20 14:35:29 UTC (rev 137) @@ -79,6 +79,7 @@ import org.apache.wicket.markup.html.form.Button; import org.apache.wicket.markup.html.form.Form; import org.apache.wicket.markup.html.link.Link; +import org.apache.wicket.markup.html.link.ResourceLink; import org.apache.wicket.markup.html.list.ListItem; import org.apache.wicket.markup.html.list.ListView; import org.apache.wicket.markup.repeater.Item; @@ -87,6 +88,7 @@ import org.apache.wicket.model.Model; import org.apache.wicket.model.PropertyModel; import org.apache.wicket.request.http.WebResponse; +import org.apache.wicket.request.resource.ByteArrayResource; import org.apache.wicket.spring.injection.annot.SpringBean; /** @@ -134,7 +136,9 @@ .add(new ReplaceEmptyLabelBehavior())); add(new Label("Molecule.formuleDevMol", new PropertyModel<String>(moleculeModel, "formuleDevMol")).add( new ReplaceEmptyLabelBehavior()).add( - new MoleculeViewBehavior(new PropertyModel<String>(moleculeModel, "formuleDevMol"), 500, 300))); + new MoleculeViewBehavior(new PropertyModel<String>(moleculeModel, "formuleDevMol"), true))); + add(new ResourceLink<Molecule>("DownloadMolFile", new ByteArrayResource("chemical/x-mdl-molfile", + moleculeModel.getObject().getFormuleDevMol().getBytes(), "molecule.mol"))); add(new Label("Molecule.nomIupca", new PropertyModel<String>(moleculeModel, "nomIupca")) .add(new ReplaceEmptyLabelBehavior())); add(new Label("Molecule.formuleBrute", new PropertyModel<String>(moleculeModel, "formuleBrute")) @@ -170,8 +174,7 @@ final Form<Void> formView = new Form<Void>("Form"); // Action : mise à jour (redirection vers le formulaire) - Link<Molecule> updateLink = new Link<Molecule>(getResource() + ".Molecule.Update", new Model<Molecule>( - moleculeModel.getObject())) { + Link<Molecule> updateLink = new Link<Molecule>(getResource() + ".Molecule.Update", moleculeModel) { @Override public void onClick() { setResponsePage(new ManageMoleculePage(getModelObject().getIdMolecule(), currentPage)); Modified: trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/utils/behaviors/MoleculeViewBehavior.java =================================================================== --- trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/utils/behaviors/MoleculeViewBehavior.java 2013-02-20 06:06:04 UTC (rev 136) +++ trunk/cantharella.web/src/main/java/nc/ird/cantharella/web/utils/behaviors/MoleculeViewBehavior.java 2013-02-20 14:35:29 UTC (rev 137) @@ -43,32 +43,27 @@ */ public class MoleculeViewBehavior extends AttributeModifier { - /** Canvas width. */ - protected int width; + /** Full view, with cliquable canvas and mol download support. */ + protected boolean fullView; - /** Canvas height. */ - protected int height; - /** * Constructor with default canvas size. * * @param replaceModel replace model */ public MoleculeViewBehavior(IModel<?> replaceModel) { - this(replaceModel, 100, 100); + this(replaceModel, false); } /** * Constructor. * * @param replaceModel replace model - * @param width canvas width - * @param height canvas height + * @param fullView full view, with cliquable canvas and mol download support */ - public MoleculeViewBehavior(IModel<?> replaceModel, int width, int height) { + public MoleculeViewBehavior(IModel<?> replaceModel, boolean fullView) { super("formula", replaceModel); - this.width = width; - this.height = height; + this.fullView = fullView; } /** {@inheritDoc} */ @@ -108,8 +103,11 @@ String id = component.getMarkupId(); response.write(JavaScriptUtils.SCRIPT_OPEN_TAG); - - response.write("addViewerMolecule('" + id + "', " + width + "," + height + ");"); + if (fullView) { + response.write("addFullViewerMolecule('" + id + "');"); + } else { + response.write("addViewerMolecule('" + id + "');"); + } response.write(JavaScriptUtils.SCRIPT_CLOSE_TAG); } Modified: trunk/cantharella.web/src/main/resources/web_en.properties =================================================================== --- trunk/cantharella.web/src/main/resources/web_en.properties 2013-02-20 06:06:04 UTC (rev 136) +++ trunk/cantharella.web/src/main/resources/web_en.properties 2013-02-20 14:35:29 UTC (rev 137) @@ -383,6 +383,7 @@ Molecule.provenanceNotAccessibles=Some related products are not displayed because you don't have the required rights Molecule.masseMolaire.Required=Molar mass - can’t be null Molecule.masseMolaire.IConverter.BigDecimal=Molar mass - must be a decimal number +Molecule.downloadMolFile=Download .mol file TestBio.date.IConverter.Date=The date is incorrectly formatted (DD/MM/YY) TestBio.concMasseDefaut.IConverter.BigDecimal=Default Conc./Mass - must be a decimal number Modified: trunk/cantharella.web/src/main/resources/web_fr.properties =================================================================== --- trunk/cantharella.web/src/main/resources/web_fr.properties 2013-02-20 06:06:04 UTC (rev 136) +++ trunk/cantharella.web/src/main/resources/web_fr.properties 2013-02-20 14:35:29 UTC (rev 137) @@ -381,6 +381,7 @@ Molecule.provenanceNotAccessibles=Certains produits associés ne sont pas affichés car vous n'avez pas les droits nécéssaires Molecule.masseMolaire.Required=Masse molaire - ne peut être nul Molecule.masseMolaire.IConverter.BigDecimal=Masse molaire - doit être un nombre décimal +Molecule.downloadMolFile=Télécharger au format mol TestBio.date.IConverter.Date=La date est mal formatée (JJ/MM/AA) TestBio.concMasseDefaut.IConverter.BigDecimal=Conc./Masse par défaut - doit être un nombre décimal Modified: trunk/cantharella.web/src/main/webapp/js/molviewer.js =================================================================== --- trunk/cantharella.web/src/main/webapp/js/molviewer.js 2013-02-20 06:06:04 UTC (rev 136) +++ trunk/cantharella.web/src/main/webapp/js/molviewer.js 2013-02-20 14:35:29 UTC (rev 137) @@ -1,8 +1,8 @@ /* * #%L * Cantharella :: Web - * $Id:$ - * $HeadURL:$ + * $Id$ + * $HeadURL$ * %% * Copyright (C) 2009 - 2013 IRD (Institut de Recherche pour le Developpement) and by respective authors (see below) * %% @@ -20,7 +20,27 @@ * along with this program. If not, see <http://www.gnu.org/licenses/>. * #L% */ -function addViewerMolecule(tagId, width, height) { +function addChemCanvas(id, formulaString, width, heigth) { + //initialize component and set visual specifications + var viewerCanvas = new ChemDoodle.ViewerCanvas(id, width, heigth); + viewerCanvas.specs.bonds_width_2D = .6; + viewerCanvas.specs.bonds_saturationWidth_2D = .18; + viewerCanvas.specs.bonds_hashSpacing_2D = 2.5; + viewerCanvas.specs.atoms_font_size_2D = 10; + viewerCanvas.specs.atoms_font_families_2D = ["Helvetica", "Arial", "sans-serif"]; + viewerCanvas.specs.atoms_displayTerminalCarbonLabels_2D = true; + + var formula = ChemDoodle.readMOL(formulaString); + + // function to scale molecul to canvas + var size = formula.getDimension(); + var scale = Math.min(viewerCanvas.width/size.x, viewerCanvas.height/size.y); + viewerCanvas.loadMolecule(formula); + viewerCanvas.specs.scale = scale*.8; + viewerCanvas.repaint(); +} + +function addViewerMolecule(tagId) { if (tagId) { tagId = '#' + tagId.replace( /(:|\.)/g, "\\$1" ); } else { @@ -34,23 +54,28 @@ var id = $(formulaTag).attr('id'); $(formulaTag).replaceWith("<canvas id='"+id+"'/>"); - //initialize component and set visual specifications - var viewerCanvas = new ChemDoodle.ViewerCanvas(id, width, height); - viewerCanvas.specs.bonds_width_2D = .6; - viewerCanvas.specs.bonds_saturationWidth_2D = .18; - viewerCanvas.specs.bonds_hashSpacing_2D = 2.5; - viewerCanvas.specs.atoms_font_size_2D = 10; - viewerCanvas.specs.atoms_font_families_2D = ["Helvetica", "Arial", "sans-serif"]; - viewerCanvas.specs.atoms_displayTerminalCarbonLabels_2D = true; + addChemCanvas(id, formulaString, 100, 100); + }); +} - var formula = ChemDoodle.readMOL(formulaString); +function addFullViewerMolecule(tagId) { + if (tagId) { + tagId = '#' + tagId.replace( /(:|\.)/g, "\\$1" ); + } else { + tagId = '[formula]'; + } - // function to scale molecul to canvas - var size = formula.getDimension(); - var scale = Math.min(viewerCanvas.width/size.x, viewerCanvas.height/size.y); - viewerCanvas.loadMolecule(formula); - viewerCanvas.specs.scale = scale*.8; - viewerCanvas.repaint(); + $(tagId).each(function(i, formulaTag) { + // il faut faire un substring de 1 car on a ajoute un caractere pour + // forcer l'existance du tag' + var formulaString = $(formulaTag).attr('formula').substring(1); + var id = $(formulaTag).attr('id'); + $(formulaTag).replaceWith("<a download='molecule'><canvas id='"+id+"'/></a>"); + + addChemCanvas(id, formulaString, 500, 300); + + // add download link + var dataUrl = document.getElementById(id).toDataURL("image/png"); + $('#' + id).parent().attr('href', dataUrl); }); - } Property changes on: trunk/cantharella.web/src/main/webapp/js/molviewer.js ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision HeadURL

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