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error including a map in ISIS-Fish
by Silvia Angelini 17 May '18

17 May '18

Dear all, I'm trying to upload a map on my ISIS-Fish case study, but I receive an error 'can't add map in region'. I tried different format but nothing... Any suggestion?! Thank you so much in advance. Silvia -- Dr. Silvia Angelini, Ph.D. Institute of Marine Science (CNR-ISMAR) Largo Fiera della Pesca 60125, Ancona, Italy Phone: 071-2078833 Fax: 071-55313 e-mail: silvia.angelini(a)an.ismar.cnr.it

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Re: [Isis-fish-users] can not open database
by Eric Chatellier 27 Apr '18

27 Apr '18

Hi, To use isis fish's mailing list, you need to be registered for us to avoid spam. I just authorized your email to post without registering, you should be able to send mail now. To receive answer sent only to the mailing list, you still need to be registered. Regards, Eric Chatellier. Le 26/04/2018 à 11:29, Silvia Angelini a écrit : > Dear Isis-Fish-Users-Owner, > > I've sent various emails to the list trying to get help with Isis-Fish, but > they have been always rejected. Do I have to subscribe again to the mailing > list or correct some informations? > > Thank you so much for your help. > > Best Regards, > > Silvia -- Éric Chatellier - www.codelutin.com - 02.40.50.29.28

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Re: [Isis-fish-users] can not open database
by Sigrid Lehuta 23 Apr '18

23 Apr '18

Hi Silvia 1) I found a mistake in the hake growth equation, T0 is declared as "T0" but then "t0" is used in the equation, please correct. 2) I noticed you are using the previous bersion, you can now download the latest 4.4.1.0. 3) Regarding your simulation Apparently you are trying to apply an effort reduction but there are no strategies selected. As for the population you need to clic on the strategy to select them for the simulation. Let me know if it works. 4) Attached you'll find a simulation I managed to run. Please unzip it in the simulation folder (C:\Users\youraccount\isis-fish-4\isis-database\simulations) with ISIS-Fish close. Then launch ISIS and in the simulation launch interface, try to "load old simulation" and select this one. Hopefully it should work... (at least with version 4.4.1.0) Keep in touch Best, Sigrid 2018-04-23 9:28 GMT+02:00 Silvia Angelini <s.angelini(a)an.ismar.cnr.it>: > Hi Sigrid, > > attached to this email, you can find the files you asked me. > > Thank you so much fo your help! > > Silvia > > Il 20/04/2018 18:28, Sigrid Lehuta ha scritto: > > Hi Silvia, > could you please copy the message contained in the window that appears > when you clic "show simulation log"? > Also could you send the file parameter.properties in the folder named > after you simulation at this location: > isis-fish-4\isis-database\simulations\ > thank you > > > 2018-04-19 15:11 GMT+02:00 Silvia Angelini <s.angelini(a)an.ismar.cnr.it>: > >> Hi Sigrid, >> >> I've managed to open the database, thanks for the suggestions! :) >> >> However the case study is not running (or I'm not launching the >> simulation in the right way), it's stops at month 0. In attached you can >> find the db. >> >> Thank you so much for your help. >> >> Silvia >> >> Il 19/04/2018 09:55, Sigrid Lehuta ha scritto: >> >> Hi Silvia, >> >> Do you already have the database charged in ISIS-Fish (I mean your own >> database)? if so, try to delete it (Region/remove locally OR if it doesn't >> work close ISIS-Fish and delete the region folder in >> isis-fish-4/isis-database/regions) and then to import the new database. >> I know this is a bug, we used to have and might not be corrected in this >> version. >> >> If you still fail in importing the region after that, could you please >> copy the full message written under "Details" in the error window and send >> it to the list together with the database? >> >> Thank you >> >> Sigrid >> >> >> Hi Sigrid, >> >> I've tried to open the db you sent us, but unfortunately it didn't work. >> I've tried using two different ISIS-Fish versions (4.4.0.2 and 4.4.1.0) but >> nothing; I've got this java error 'java.lang.reflect.InvocationTargetException'. >> Can you help me to solve the problem? >> >> Thank you so much in advance for your help. >> >> Silvia >> >> Il 05/04/2018 18:29, slehuta ha scritto: >> >> Hi Silvia and all, >> >> Thanks for sending your database. >> >> Actually there was 2 databases in the zip. I worked on SoS_2018. However >> there should only be one in the zip. How did you export them ? using the >> menu/export a region ? >> >> I had a look and managed to fix a few bugs (mainly in the equations : >> missing ";" or "lenght" instead of "length"). Nothing bad really but java >> is picky. You can "open the editor" for each equation and "check" them to >> avoid syntaxic errors like these. >> >> I used the button "check the region" at the root of the tree which >> indicates problems in the DB. >> >> Simulations are running for me with dummy numbers.Can you try again on >> your side using the attached DB? >> >> >> Congrats on this first try. >> >> Regards, >> >> Sigrid >> >> >> >> -- >> Dr. Silvia Angelini, Ph.D. >> Institute of Marine Science (CNR-ISMAR) >> Largo Fiera della Pesca >> 60125, Ancona, Italy >> Phone: 071-2078833 >> Fax: 071-55313 >> e-mail: silvia.angelini(a)an.ismar.cnr.it >> >> > > -- > Dr. Silvia Angelini, Ph.D. > Institute of Marine Science (CNR-ISMAR) > Largo Fiera della Pesca > 60125, Ancona, Italy > Phone: 071-2078833 > Fax: 071-55313 > e-mail: silvia.angelini(a)an.ismar.cnr.it > >

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Re: [Isis-fish-users] can not open database
by Sigrid Lehuta 20 Apr '18

20 Apr '18

Hi Silvia, could you please copy the message contained in the window that appears when you clic "show simulation log"? Also could you send the file parameter.properties in the folder named after you simulation at this location: isis-fish-4\isis-database\simulations\ thank you 2018-04-19 15:11 GMT+02:00 Silvia Angelini <s.angelini(a)an.ismar.cnr.it>: > Hi Sigrid, > > I've managed to open the database, thanks for the suggestions! :) > > However the case study is not running (or I'm not launching the simulation > in the right way), it's stops at month 0. In attached you can find the db. > > Thank you so much for your help. > > Silvia > > Il 19/04/2018 09:55, Sigrid Lehuta ha scritto: > > Hi Silvia, > > Do you already have the database charged in ISIS-Fish (I mean your own > database)? if so, try to delete it (Region/remove locally OR if it doesn't > work close ISIS-Fish and delete the region folder in > isis-fish-4/isis-database/regions) and then to import the new database. I > know this is a bug, we used to have and might not be corrected in this > version. > > If you still fail in importing the region after that, could you please > copy the full message written under "Details" in the error window and send > it to the list together with the database? > > Thank you > > Sigrid > > > Hi Sigrid, > > I've tried to open the db you sent us, but unfortunately it didn't work. > I've tried using two different ISIS-Fish versions (4.4.0.2 and 4.4.1.0) but > nothing; I've got this java error 'java.lang.reflect.InvocationTargetException'. > Can you help me to solve the problem? > > Thank you so much in advance for your help. > > Silvia > > Il 05/04/2018 18:29, slehuta ha scritto: > > Hi Silvia and all, > > Thanks for sending your database. > > Actually there was 2 databases in the zip. I worked on SoS_2018. However > there should only be one in the zip. How did you export them ? using the > menu/export a region ? > > I had a look and managed to fix a few bugs (mainly in the equations : > missing ";" or "lenght" instead of "length"). Nothing bad really but java > is picky. You can "open the editor" for each equation and "check" them to > avoid syntaxic errors like these. > > I used the button "check the region" at the root of the tree which > indicates problems in the DB. > > Simulations are running for me with dummy numbers.Can you try again on > your side using the attached DB? > > > Congrats on this first try. > > Regards, > > Sigrid > > > > -- > Dr. Silvia Angelini, Ph.D. > Institute of Marine Science (CNR-ISMAR) > Largo Fiera della Pesca > 60125, Ancona, Italy > Phone: 071-2078833 > Fax: 071-55313 > e-mail: silvia.angelini(a)an.ismar.cnr.it > >

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can not open database
by Sigrid Lehuta 19 Apr '18

19 Apr '18

Hi Silvia, Do you already have the database charged in ISIS-Fish (I mean your own database)? if so, try to delete it (Region/remove locally OR if it doesn't work close ISIS-Fish and delete the region folder in isis-fish-4/isis-database/regions) and then to import the new database. I know this is a bug, we used to have and might not be corrected in this version. If you still fail in importing the region after that, could you please copy the full message written under "Details" in the error window and send it to the list together with the database? Thank you Sigrid Hi Sigrid, I've tried to open the db you sent us, but unfortunately it didn't work. I've tried using two different ISIS-Fish versions (4.4.0.2 and 4.4.1.0) but nothing; I've got this java error 'java.lang.reflect.InvocationTargetException'. Can you help me to solve the problem? Thank you so much in advance for your help. Silvia Il 05/04/2018 18:29, slehuta ha scritto: Hi Silvia and all, Thanks for sending your database. Actually there was 2 databases in the zip. I worked on SoS_2018. However there should only be one in the zip. How did you export them ? using the menu/export a region ? I had a look and managed to fix a few bugs (mainly in the equations : missing ";" or "lenght" instead of "length"). Nothing bad really but java is picky. You can "open the editor" for each equation and "check" them to avoid syntaxic errors like these. I used the button "check the region" at the root of the tree which indicates problems in the DB. Simulations are running for me with dummy numbers.Can you try again on your side using the attached DB? Congrats on this first try. Regards, Sigrid

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[ANN] - ISIS-Fish 4.4.1.0 released
by Eric Chatellier 03 Apr '18

03 Apr '18

The ISIS-Fish team is pleased to announce the isis-fish-4.4.1.0 release! Simulateur de pecherie complexe. Documentation of the project can be found here: http://doc.codelutin.com/isis-fish Changes ------- Changes in this version include: #9204: Problème d'interface lorsque l'estimation de la durée restante pour la simulation est négative #9308: Les scripts ne compilent pas si le programme est installé dans un chemin avec caractères spéciaux #9334: Problème lors de l'utilisation de script d'optimisation (lock de la base) #9339: NPE sur une matrice récupéré depuis le ResultStorage en dehors d'une simulation #9364: On linux thread not terminated #9648: Impossible d'importer une matrice ND dans l'interface de lancement de simulation #7989: Use java 8 compiler and code compliance #8733: Export de tous les paramètres pour illustrer un papier #9363: Add datarmor simulation launcher #9680: Changer le titre "Coefficient" par "Effectif" pour les Immigrations seulement #9428: Update libs (hibernate 5.2...) Downloads --------- For a manual installation, you can download files here: https://forge.codelutin.com/projects/isis-fish/files * https://forge.codelutin.com/attachments/download/5139/isis-fish-4.4.1.0-bin… Maven artifacts --------------- Artifacts are deployed in nuiton maven repository http://maven.nuiton.org/other-releases/ Have fun! -ISIS-Fish team -- Éric Chatellier - www.codelutin.com - 02.40.50.29.28

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Ressources Isis-fish
by Postmaster ISIS-Fish 31 Mar '18

31 Mar '18

Amis utilisateurs d'ISIS-Fish, Ce mail automatique, envoyé tous les 3 mois sur les listes de diffusions du projet, a pour but de vous rappeler toutes les ressources disponibles pour toutes vos éventuelles questions et problèmes. Documentation et manuel utilisateurs ------------------------------------ La documentation d'ISIS-Fish est présente sur le site à cette adresse : http://isis-fish.org/v4/index.html. N'hésitez pas à nous remonter les parties qui ne sont pas claires ou les parties qui ne sont pas à jour, le logiciel évoluant, certaines parties de la documentation sont peut-être obsolètes. Questions et FAQ ---------------- Vous pouvez poser vos questions à cette même liste de diffusion en envoyant un mail à isis-fish-users(a)list.isis-fish.org. Toutes les personnes abonnées le recevront et pourront répondre à vos éventuelles questions. N'oubliez pas, avant de poser votre question, de rechercher parmis les archives de la liste (http://list.isis-fish.org/pipermail/isis-fish-users/) votre question a peut-être déjà été posée. Les questions les plus fréquemment posées sont regroupées sur le site sur la page FAQ : http://isis-fish.org/v4/user/FAQ.html Forge, rapports de bug, suivi des évolutions -------------------------------------------- Si vous rencontrez un bug, vous pouvez vérifier sur la forge ISIS-Fish (http://forge.codelutin.com/projects/isis-fish/issues) si nous en avons déjà connaissance. Si nous n'en avons pas connaissance, vous pouvez nous rapporter le bug, nous l'intègrerons dans la liste des évolutions prévues (http://forge.codelutin.com/projects/isis-fish/roadmap) Pour rapporter un bug (ou une demande d'évolution), donnez nous le maximum de détails sur ce bug (comment vous l'avez obtenu ? votre base, vos paramètres et le fichier debug.txt). Plus nous avons d'informations, plus nous pourrons vous aider simplement. L'équipe ISIS-Fish

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erreur script FillTargetFactors
by Sigrid Lehuta 22 Mar '18

22 Mar '18

Encore moi ! j avais crée un script (objet script) qui remplissait les equations de target factors tout seul. je l ai repris aujourd hui pour le modifier pour une autre base. j ai fais fichier /nouveau/script, je l ai completement effacé et j ai collé le texte de l ancien script, que j ai ensuite modifié a la marge (SMAC c est le nouveau). quand je fais evalué, j ai cette erreur : Caused by: java.io.FileNotFoundException: InputMixChannel\MatrixTargetFactors_glm.nb2Cpue_190216.csv (Le chemin d’accès spécifié est introuvable) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.<init>(FileInputStream.java:138) at java.io.FileReader.<init>(FileReader.java:72) at scripts.FillTargetFactors.updateMetier(FillTargetFactors.java:143) at scripts.FillTargetFactors.run(FillTargetFactors.java:59) at scripts.FillTargetFactors_SMAC.main(FillTargetFactors_SMAC.java:171) ... 49 more or le chemin indiqué est celui de l ancien script. je l ai modifié dans le nouveau. C est comme si quand j execute ce nouveau script il essayait d executer l ancien ! Ca vient du copié collé ? Merci

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Probleme lancement isis sous linux
by Sigrid Lehuta 22 Mar '18

22 Mar '18

Hola, je rencontre encore des problemes pour le lancement d isis sur mon serveur. quand je double clic sur le .sh le terminal apparait, l icone dans la barre des taches aussi mais pas l interface et j ai ce message d'erreur. Idem si je lance depuis un terminal. C est assez urgent desolee. Merci de votre aide Sigrid java.lang.NullPointerException at fr.ifremer.isisfish.datastore.VersionStorage.getStorageNames(VersionStorage.java:404) at fr.ifremer.isisfish.datastore.RuleStorage.getRuleNames(RuleStorage.java:118) at fr.ifremer.isisfish.ui.simulator.RuleChooser.$completeSetup(RuleChooser.java:523) at fr.ifremer.isisfish.ui.simulator.RuleChooser.$initialize(RuleChooser.java:588) at fr.ifremer.isisfish.ui.simulator.RuleChooser. (RuleChooser.java:132) at fr.ifremer.isisfish.ui.simulator.ParamsUI.createRuleChooser(ParamsUI.java:837) at fr.ifremer.isisfish.ui.simulator.ParamsUI.$initialize(ParamsUI.java:1068) at fr.ifremer.isisfish.ui.simulator.ParamsUI. (ParamsUI.java:197) at fr.ifremer.isisfish.ui.simulator.SimulUI.createParamsUI(SimulUI.java:289) at fr.ifremer.isisfish.ui.simulator.SimulUI.$initialize(SimulUI.java:337) at fr.ifremer.isisfish.ui.simulator.SimulUI. (SimulUI.java:145) at fr.ifremer.isisfish.ui.WelcomeTabUI.createSimulUI(WelcomeTabUI.java:370) at fr.ifremer.isisfish.ui.WelcomeTabUI.$initialize(WelcomeTabUI.java:408) at fr.ifremer.isisfish.ui.WelcomeTabUI. (WelcomeTabUI.java:123) at fr.ifremer.isisfish.ui.WelcomeHandler.afterInit(WelcomeHandler.java:99) at fr.ifremer.isisfish.ui.WelcomeUI.$afterCompleteSetup(WelcomeUI.java:96) at fr.ifremer.isisfish.ui.WelcomeUI.$completeSetup(WelcomeUI.java:583) at fr.ifremer.isisfish.ui.WelcomeUI.$initialize(WelcomeUI.java:754) at fr.ifremer.isisfish.ui.WelcomeUI. (WelcomeUI.java:109) at fr.ifremer.isisfish.IsisFish$3.run(IsisFish.java:719) at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756) at java.awt.EventQueue.access$500(EventQueue.java:97) at java.awt.EventQueue$3.run(EventQueue.java:709) at java.awt.EventQueue$3.run(EventQueue.java:703) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80) at java.awt.EventQueue.dispatchEvent(EventQueue.java:726) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

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Défaut de fonctionnement sur Java 9
by Eric Chatellier 22 Feb '18

22 Feb '18

Bonjour, La dernière version stable de Java version 9 est sortit en septembre 2017. Elle contient des changements importants et Isis Fish ne fonctionne pas encore dessus. Nous vous recommandons de rester sur Java 8 pour le moment.

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